Wall clock time and date at job start Tue Mar 31 2020 23:10:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50691 * 109.47281 * 2 1 4 4 N 1.30294 * 126.35379 * 280.05381 * 3 2 1 5 5 N 1.28526 * 110.05724 * 180.31437 * 4 3 2 6 6 C 1.31217 * 109.86119 * 359.71607 * 5 4 3 7 7 N 1.38585 * 126.47781 * 179.97438 * 6 5 4 8 8 C 1.46894 * 111.00200 * 249.82521 * 7 6 5 9 9 C 1.46902 * 110.99520 * 13.77972 * 7 6 5 10 10 H 1.09000 * 109.47054 * 54.99637 * 9 7 6 11 11 C 1.53003 * 109.47035 * 294.99572 * 9 7 6 12 12 C 1.50698 * 109.46936 * 174.99874 * 9 7 6 13 13 H 1.07998 * 119.99836 * 359.97438 * 12 9 7 14 14 C 1.37877 * 119.99869 * 179.97438 * 12 9 7 15 15 N 1.31509 * 120.00263 * 359.97438 * 14 12 9 16 16 Si 1.86805 * 119.99788 * 180.02562 * 14 12 9 17 17 H 1.48500 * 109.47326 * 90.00107 * 16 14 12 18 18 H 1.48498 * 109.46732 * 209.99894 * 16 14 12 19 19 H 1.48495 * 109.46965 * 329.99620 * 16 14 12 20 20 N 1.36456 * 107.05267 * 0.02562 * 6 5 4 21 21 C 1.46506 * 127.13781 * 180.02562 * 20 6 5 22 22 C 1.52999 * 109.47228 * 82.55991 * 21 20 6 23 23 C 1.53003 * 109.47303 * 59.65028 * 22 21 20 24 24 O 1.42906 * 109.46920 * 299.65048 * 22 21 20 25 25 C 1.53002 * 109.46948 * 179.65140 * 22 21 20 26 26 H 1.09002 * 109.46800 * 64.99867 * 25 22 21 27 27 C 1.52995 * 109.46900 * 304.99681 * 25 22 21 28 28 C 1.53003 * 109.46852 * 184.99750 * 25 22 21 29 29 C 1.52996 * 109.46955 * 184.99913 * 28 25 22 30 30 H 1.09004 * 109.46637 * 303.27103 * 1 2 3 31 31 H 1.09002 * 109.47106 * 63.26180 * 1 2 3 32 32 H 1.08993 * 109.47466 * 183.26772 * 1 2 3 33 33 H 1.09004 * 109.46704 * 239.99950 * 2 1 3 34 34 H 1.08999 * 109.47153 * 120.00695 * 2 1 3 35 35 H 1.09007 * 109.47047 * 53.65173 * 8 7 6 36 36 H 1.08996 * 109.47047 * 173.65069 * 8 7 6 37 37 H 1.08996 * 109.47257 * 293.65420 * 8 7 6 38 38 H 1.08992 * 109.47439 * 300.00576 * 11 9 7 39 39 H 1.09005 * 109.46652 * 60.00374 * 11 9 7 40 40 H 1.08996 * 109.47017 * 179.97438 * 11 9 7 41 41 H 0.96998 * 120.00610 * 179.97438 * 15 14 12 42 42 H 1.08996 * 109.46999 * 202.55845 * 21 20 6 43 43 H 1.08995 * 109.46838 * 322.55951 * 21 20 6 44 44 H 1.08998 * 109.46806 * 60.07642 * 23 22 21 45 45 H 1.09004 * 109.47066 * 180.02562 * 23 22 21 46 46 H 1.08997 * 109.46735 * 300.07751 * 23 22 21 47 47 H 0.96703 * 113.99740 * 299.99591 * 24 22 21 48 48 H 1.09002 * 109.47388 * 300.00261 * 27 25 22 49 49 H 1.09004 * 109.47060 * 60.00628 * 27 25 22 50 50 H 1.09008 * 109.47099 * 179.97438 * 27 25 22 51 51 H 1.08999 * 109.47193 * 305.00132 * 28 25 22 52 52 H 1.09000 * 109.46595 * 65.00099 * 28 25 22 53 53 H 1.09008 * 109.47168 * 300.00130 * 29 28 25 54 54 H 1.09004 * 109.47458 * 59.99890 * 29 28 25 55 55 H 1.08997 * 109.47163 * 180.02562 * 29 28 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 7 2.1172 2.2100 -1.0332 5 7 2.5939 3.3498 -0.6793 6 6 2.8353 3.3510 0.6105 7 7 3.3527 4.4021 1.3509 8 6 4.7195 4.1065 1.8007 9 6 3.3096 5.6558 0.5865 10 1 2.2896 5.8411 0.2497 11 6 4.2351 5.5454 -0.6269 12 6 3.7640 6.7944 1.4629 13 1 4.0553 6.6055 2.4856 14 6 3.8079 8.0770 0.9592 15 7 3.4538 8.3069 -0.2863 16 14 4.3719 9.4883 2.0454 17 1 5.8421 9.6540 1.9181 18 1 3.6942 10.7400 1.6222 19 1 4.0276 9.1927 3.4593 20 7 2.4816 2.1215 1.0849 21 6 2.5694 1.6486 2.4688 22 6 1.3434 2.1261 3.2497 23 6 0.0751 1.5755 2.5946 24 8 1.3013 3.5545 3.2433 25 6 1.4309 1.6249 4.6927 26 1 2.2856 2.0872 5.1866 27 6 1.6015 0.1045 4.6949 28 6 0.1482 1.9953 5.4398 29 6 0.2855 1.6057 6.9130 30 1 -0.3633 0.5638 0.8593 31 1 -0.3633 0.4624 -0.9178 32 1 -0.3634 -1.0259 0.0586 33 1 1.8933 -0.5139 -0.8900 34 1 1.8934 -0.5139 0.8899 35 1 5.3328 3.8308 0.9427 36 1 5.1425 4.9885 2.2813 37 1 4.6974 3.2807 2.5117 38 1 5.2550 5.3600 -0.2902 39 1 3.9064 4.7218 -1.2608 40 1 4.2028 6.4755 -1.1943 41 1 3.4843 9.2093 -0.6407 42 1 2.6049 0.5593 2.4789 43 1 3.4726 2.0459 2.9318 44 1 0.1067 0.4860 2.6007 45 1 -0.7983 1.9161 3.1507 46 1 0.0136 1.9315 1.5662 47 1 2.0756 3.9726 3.6443 48 1 0.7469 -0.3578 4.2008 49 1 2.5154 -0.1594 4.1626 50 1 1.6643 -0.2526 5.7229 51 1 -0.0202 3.0694 5.3623 52 1 -0.6950 1.4627 5.0001 53 1 0.4538 0.5315 6.9905 54 1 1.1288 2.1382 7.3527 55 1 -0.6285 1.8691 7.4452 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001546408215.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:10:01 Heat of formation + Delta-G solvation = 22.633392 kcal Electronic energy + Delta-G solvation = -33106.175742 eV Core-core repulsion = 29179.632265 eV Total energy + Delta-G solvation = -3926.543477 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.242 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -43.90528 -40.25863 -39.01363 -36.06768 -35.64341 -35.06058 -34.18054 -32.18422 -30.74569 -30.13077 -29.50712 -28.11929 -27.22936 -26.79393 -25.80635 -24.83603 -23.50101 -22.76559 -21.23585 -20.98329 -20.22927 -18.53547 -18.05221 -17.60766 -17.17365 -16.95814 -16.47266 -16.17054 -15.87391 -15.74313 -15.36861 -15.30664 -14.94464 -14.78206 -14.52525 -14.34604 -13.87015 -13.53833 -13.48627 -13.27999 -13.17960 -13.11593 -13.01745 -12.96287 -12.80857 -12.65725 -12.59353 -12.49329 -12.35825 -12.18359 -12.14811 -12.09002 -11.99707 -11.93150 -11.67896 -11.52325 -11.38234 -11.26444 -10.96399 -10.78411 -10.45690 -10.40717 -10.22374 -8.96272 -8.08155 -6.22763 0.97591 1.42547 1.46197 1.48225 1.57509 2.02407 2.44118 3.10320 3.21766 3.29164 3.48240 3.55715 3.66563 3.81799 3.96238 4.04763 4.08633 4.21856 4.27616 4.35436 4.40377 4.51680 4.55335 4.58094 4.65092 4.71459 4.72114 4.73645 4.74788 4.83305 4.90727 4.98031 4.99620 5.02239 5.04965 5.11640 5.16409 5.19184 5.22211 5.24624 5.25821 5.33190 5.34869 5.41907 5.53547 5.56206 5.62362 5.67375 5.70836 5.95550 6.16375 6.28036 6.71102 6.87413 6.92180 7.45854 8.00575 8.98567 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.010911 B = 0.004431 C = 0.003435 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2565.693066 B = 6317.229696 C = 8150.576163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.026 4.026 3 C 0.174 3.826 4 N -0.342 5.342 5 N -0.374 5.374 6 C 0.377 3.623 7 N -0.440 5.440 8 C 0.036 3.964 9 C 0.248 3.752 10 H -0.010 1.010 11 C -0.161 4.161 12 C -0.515 4.515 13 H 0.076 0.924 14 C 0.009 3.991 15 N -0.923 5.923 16 Si 0.968 3.032 17 H -0.274 1.274 18 H -0.291 1.291 19 H -0.261 1.261 20 N -0.463 5.463 21 C 0.074 3.926 22 C 0.123 3.877 23 C -0.146 4.146 24 O -0.562 6.562 25 C -0.103 4.103 26 H 0.077 0.923 27 C -0.154 4.154 28 C -0.115 4.115 29 C -0.149 4.149 30 H 0.072 0.928 31 H 0.037 0.963 32 H 0.098 0.902 33 H 0.100 0.900 34 H 0.112 0.888 35 H 0.016 0.984 36 H 0.091 0.909 37 H 0.086 0.914 38 H 0.025 0.975 39 H 0.046 0.954 40 H 0.056 0.944 41 H 0.260 0.740 42 H 0.137 0.863 43 H 0.101 0.899 44 H 0.107 0.893 45 H 0.064 0.936 46 H 0.037 0.963 47 H 0.381 0.619 48 H 0.069 0.931 49 H 0.068 0.932 50 H 0.072 0.928 51 H 0.044 0.956 52 H 0.066 0.934 53 H 0.069 0.931 54 H 0.051 0.949 55 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.089 -23.068 14.887 27.628 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.065 4.065 3 C -0.095 4.095 4 N -0.181 5.181 5 N -0.217 5.217 6 C 0.019 3.981 7 N -0.163 5.163 8 C -0.111 4.111 9 C 0.141 3.859 10 H 0.008 0.992 11 C -0.221 4.221 12 C -0.554 4.554 13 H 0.094 0.906 14 C -0.190 4.190 15 N -0.562 5.562 16 Si 0.793 3.207 17 H -0.199 1.199 18 H -0.217 1.217 19 H -0.185 1.185 20 N -0.158 5.158 21 C -0.048 4.048 22 C 0.081 3.919 23 C -0.202 4.202 24 O -0.369 6.369 25 C -0.122 4.122 26 H 0.096 0.904 27 C -0.211 4.211 28 C -0.152 4.152 29 C -0.206 4.206 30 H 0.091 0.909 31 H 0.056 0.944 32 H 0.116 0.884 33 H 0.119 0.881 34 H 0.131 0.869 35 H 0.035 0.965 36 H 0.110 0.890 37 H 0.104 0.896 38 H 0.044 0.956 39 H 0.064 0.936 40 H 0.074 0.926 41 H 0.069 0.931 42 H 0.155 0.845 43 H 0.119 0.881 44 H 0.125 0.875 45 H 0.083 0.917 46 H 0.056 0.944 47 H 0.230 0.770 48 H 0.088 0.912 49 H 0.087 0.913 50 H 0.091 0.909 51 H 0.063 0.937 52 H 0.085 0.915 53 H 0.088 0.912 54 H 0.070 0.930 55 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -4.049 -22.469 13.481 26.514 hybrid contribution 1.183 1.385 0.596 1.917 sum -2.866 -21.083 14.077 25.512 Atomic orbital electron populations 1.22226 0.93230 1.04184 1.02837 1.20168 0.97036 0.83613 1.05708 1.25491 1.02359 0.99038 0.82608 1.73816 1.18915 0.98677 1.26650 1.74670 1.22072 1.15380 1.09618 1.22975 1.00307 0.86182 0.88626 1.59132 1.21154 0.99359 1.36635 1.22455 0.86369 1.03125 0.99187 1.18804 0.93771 0.83537 0.89761 0.99162 1.22340 0.97813 1.01399 1.00524 1.21320 1.44298 0.91489 0.98260 0.90622 1.25800 0.95460 1.01470 0.96240 1.70107 1.48861 1.21396 1.15826 0.85405 0.78159 0.77911 0.79201 1.19925 1.21743 1.18483 1.46142 1.49022 1.10468 1.10127 1.23155 1.01201 1.03017 0.77446 1.21655 0.94093 0.81659 0.94512 1.22215 0.96600 1.01938 0.99474 1.86671 1.47446 1.18417 1.84383 1.21704 0.99267 0.98355 0.92894 0.90439 1.22059 1.02774 0.92788 1.03501 1.21498 0.97150 1.00702 0.95880 1.21801 1.01515 1.02144 0.95182 0.90929 0.94378 0.88353 0.88145 0.86949 0.96530 0.89035 0.89579 0.95550 0.93555 0.92556 0.93094 0.84548 0.88106 0.87512 0.91733 0.94399 0.77014 0.91207 0.91299 0.90905 0.93679 0.91545 0.91188 0.93022 0.93008 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.88 9.60 71.98 0.69 -2.18 16 2 C -0.03 -0.48 6.28 29.85 0.19 -0.29 16 3 C 0.17 5.48 6.21 137.63 0.86 6.34 16 4 N -0.34 -14.76 12.18 -49.54 -0.60 -15.36 16 5 N -0.37 -18.41 8.97 -58.00 -0.52 -18.93 16 6 C 0.38 15.89 6.10 260.11 1.59 17.48 16 7 N -0.44 -18.77 3.88 -711.00 -2.76 -21.53 16 8 C 0.04 1.25 8.57 127.69 1.09 2.35 16 9 C 0.25 13.35 2.08 44.17 0.09 13.44 16 10 H -0.01 -0.62 8.11 -2.39 -0.02 -0.64 16 11 C -0.16 -8.83 8.28 71.98 0.60 -8.23 16 12 C -0.52 -27.92 7.79 25.60 0.20 -27.72 16 13 H 0.08 3.82 6.82 -2.91 -0.02 3.80 16 14 C 0.01 0.51 5.30 84.66 0.45 0.96 16 15 N -0.92 -55.70 11.32 21.45 0.24 -55.46 16 16 Si 0.97 43.54 29.54 68.60 2.03 45.57 16 17 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 18 H -0.29 -13.23 7.11 99.48 0.71 -12.52 16 19 H -0.26 -11.07 7.11 99.48 0.71 -10.37 16 20 N -0.46 -14.30 2.30 -514.85 -1.19 -15.48 16 21 C 0.07 1.45 4.69 86.38 0.41 1.86 16 22 C 0.12 2.48 0.63 -10.79 -0.01 2.47 16 23 C -0.15 -2.95 6.05 71.98 0.44 -2.51 16 24 O -0.56 -17.13 11.20 -148.98 -1.67 -18.80 16 25 C -0.10 -1.41 1.96 -10.79 -0.02 -1.43 16 26 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 27 C -0.15 -1.21 8.21 71.98 0.59 -0.62 16 28 C -0.11 -1.79 4.69 30.59 0.14 -1.64 16 29 C -0.15 -1.84 9.67 71.98 0.70 -1.14 16 30 H 0.07 1.32 3.19 -2.39 -0.01 1.31 16 31 H 0.04 0.86 8.14 -2.39 -0.02 0.84 16 32 H 0.10 1.00 8.14 -2.39 -0.02 0.98 16 33 H 0.10 1.74 8.14 -2.39 -0.02 1.72 16 34 H 0.11 1.18 6.89 -2.39 -0.02 1.17 16 35 H 0.02 0.61 6.85 -2.38 -0.02 0.60 16 36 H 0.09 3.34 6.27 -2.39 -0.01 3.32 16 37 H 0.09 2.24 5.88 -2.39 -0.01 2.23 16 38 H 0.03 1.33 6.62 -2.39 -0.02 1.32 16 39 H 0.05 2.57 5.42 -2.38 -0.01 2.56 16 40 H 0.06 3.41 6.07 -2.39 -0.01 3.39 16 41 H 0.26 14.96 8.31 -92.71 -0.77 14.19 16 42 H 0.14 1.60 5.07 -2.39 -0.01 1.59 16 43 H 0.10 1.87 5.84 -2.39 -0.01 1.85 16 44 H 0.11 1.34 5.66 -2.39 -0.01 1.32 16 45 H 0.06 1.35 6.46 -2.39 -0.02 1.34 16 46 H 0.04 1.05 5.13 -2.39 -0.01 1.04 16 47 H 0.38 10.95 8.75 -74.06 -0.65 10.30 16 48 H 0.07 0.46 6.56 -2.39 -0.02 0.44 16 49 H 0.07 0.39 6.34 -2.39 -0.02 0.37 16 50 H 0.07 0.47 6.57 -2.38 -0.02 0.46 16 51 H 0.04 0.95 7.69 -2.39 -0.02 0.93 16 52 H 0.07 0.99 6.65 -2.39 -0.02 0.97 16 53 H 0.07 0.65 6.57 -2.38 -0.02 0.63 16 54 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 55 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 Total: -1.00 -78.39 393.39 3.80 -74.59 By element: Atomic # 1 Polarization: 26.01 SS G_CDS: 0.27 Total: 26.28 kcal Atomic # 6 Polarization: -8.88 SS G_CDS: 7.99 Total: -0.88 kcal Atomic # 7 Polarization: -121.94 SS G_CDS: -4.83 Total: -126.76 kcal Atomic # 8 Polarization: -17.13 SS G_CDS: -1.67 Total: -18.80 kcal Atomic # 14 Polarization: 43.54 SS G_CDS: 2.03 Total: 45.57 kcal Total: -78.39 3.80 -74.59 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001546408215.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.226 kcal (2) G-P(sol) polarization free energy of solvation -78.390 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.836 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.797 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.592 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.633 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds