Wall clock time and date at job start Tue Mar 31 2020 23:10:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.50700 * 109.47251 * 2 1 4 4 N 1.30288 * 126.34435 * 84.55655 * 3 2 1 5 5 N 1.28537 * 110.05397 * 179.97438 * 4 3 2 6 6 C 1.31211 * 109.85885 * 0.02562 * 5 4 3 7 7 N 1.38580 * 126.47632 * 180.02562 * 6 5 4 8 8 C 1.46900 * 110.99935 * 250.92653 * 7 6 5 9 9 C 1.46901 * 110.99684 * 14.87566 * 7 6 5 10 10 H 1.08997 * 109.47048 * 54.99746 * 9 7 6 11 11 C 1.53002 * 109.46924 * 295.00148 * 9 7 6 12 12 C 1.50699 * 109.47318 * 175.00388 * 9 7 6 13 13 H 1.08001 * 119.99600 * 359.97438 * 12 9 7 14 14 C 1.37872 * 119.99972 * 180.02562 * 12 9 7 15 15 N 1.31509 * 120.00459 * 359.97438 * 14 12 9 16 16 Si 1.86800 * 119.99713 * 179.97438 * 14 12 9 17 17 H 1.48497 * 109.47202 * 359.97438 * 16 14 12 18 18 H 1.48502 * 109.47411 * 119.99720 * 16 14 12 19 19 H 1.48495 * 109.47252 * 239.99855 * 16 14 12 20 20 N 1.36461 * 107.05139 * 359.75823 * 6 5 4 21 21 C 1.46508 * 127.13391 * 180.24026 * 20 6 5 22 22 C 1.53004 * 109.46859 * 89.31029 * 21 20 6 23 23 C 1.52997 * 109.47221 * 298.13895 * 22 21 20 24 24 O 1.42903 * 109.46883 * 58.13756 * 22 21 20 25 25 C 1.52999 * 109.46922 * 178.13656 * 22 21 20 26 26 H 1.09001 * 109.46896 * 299.99973 * 25 22 21 27 27 C 1.52997 * 109.46919 * 60.00247 * 25 22 21 28 28 C 1.53004 * 109.47009 * 180.02562 * 25 22 21 29 29 C 1.52994 * 109.46931 * 175.00027 * 28 25 22 30 30 H 1.08997 * 109.47019 * 184.86945 * 1 2 3 31 31 H 1.09000 * 109.46697 * 304.87055 * 1 2 3 32 32 H 1.08999 * 109.47053 * 64.87153 * 1 2 3 33 33 H 1.09006 * 109.46913 * 240.00086 * 2 1 3 34 34 H 1.08998 * 109.47124 * 120.00046 * 2 1 3 35 35 H 1.08995 * 109.47508 * 62.56400 * 8 7 6 36 36 H 1.08997 * 109.46903 * 182.57392 * 8 7 6 37 37 H 1.09002 * 109.47037 * 302.56464 * 8 7 6 38 38 H 1.08994 * 109.47436 * 299.99640 * 11 9 7 39 39 H 1.08998 * 109.47604 * 60.00351 * 11 9 7 40 40 H 1.08998 * 109.46820 * 179.97438 * 11 9 7 41 41 H 0.96998 * 120.00341 * 179.97438 * 15 14 12 42 42 H 1.08999 * 109.46981 * 209.31218 * 21 20 6 43 43 H 1.08996 * 109.46899 * 329.31339 * 21 20 6 44 44 H 1.08995 * 109.47624 * 65.95401 * 23 22 21 45 45 H 1.08998 * 109.46897 * 185.95778 * 23 22 21 46 46 H 1.08999 * 109.47002 * 305.95038 * 23 22 21 47 47 H 0.96705 * 114.00121 * 65.70804 * 24 22 21 48 48 H 1.08992 * 109.47345 * 60.00211 * 27 25 22 49 49 H 1.09005 * 109.47038 * 180.02562 * 27 25 22 50 50 H 1.08999 * 109.47171 * 299.99504 * 27 25 22 51 51 H 1.08997 * 109.46718 * 294.99692 * 28 25 22 52 52 H 1.08993 * 109.47045 * 54.99902 * 28 25 22 53 53 H 1.09004 * 109.47117 * 179.97438 * 29 28 25 54 54 H 1.09001 * 109.47161 * 299.99917 * 29 28 25 55 55 H 1.08999 * 109.47327 * 59.99637 * 29 28 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0325 1.4208 0.0000 4 7 2.1960 2.1820 1.0447 5 7 2.6400 3.3336 0.6858 6 6 2.7842 3.3692 -0.6179 7 7 3.2403 4.4420 -1.3673 8 6 2.1496 5.0394 -2.1492 9 6 3.8852 5.4462 -0.5107 10 1 4.6765 4.9733 0.0709 11 6 2.8472 6.0503 0.4372 12 6 4.4750 6.5349 -1.3696 13 1 4.3806 6.4856 -2.4443 14 6 5.1360 7.5934 -0.7834 15 7 5.2515 7.6532 0.5252 16 14 5.8677 8.9426 -1.8482 17 1 5.6037 8.6425 -3.2783 18 1 5.2483 10.2446 -1.4926 19 1 7.3334 9.0131 -1.6201 20 7 2.4059 2.1483 -1.0958 21 6 2.3989 1.7091 -2.4935 22 6 3.7568 1.0963 -2.8423 23 6 4.8496 2.1558 -2.6865 24 8 4.0255 0.0021 -1.9633 25 6 3.7342 0.5956 -4.2878 26 1 2.9556 -0.1592 -4.3987 27 6 3.4465 1.7671 -5.2289 28 6 5.0919 -0.0178 -4.6364 29 6 5.0304 -0.6296 -6.0374 30 1 -0.3633 -1.0239 0.0872 31 1 -0.3633 0.5876 0.8432 32 1 -0.3633 0.4364 -0.9304 33 1 1.8934 -0.5139 -0.8901 34 1 1.8934 -0.5138 0.8900 35 1 1.3903 5.4319 -1.4729 36 1 2.5438 5.8497 -2.7625 37 1 1.7055 4.2799 -2.7926 38 1 2.0558 6.5232 -0.1443 39 1 2.4205 5.2629 1.0585 40 1 3.3258 6.7951 1.0730 41 1 5.7169 8.3977 0.9376 42 1 1.6165 0.9638 -2.6362 43 1 2.2089 2.5642 -3.1420 44 1 4.9373 2.4358 -1.6368 45 1 5.7998 1.7515 -3.0354 46 1 4.5902 3.0347 -3.2767 47 1 3.4221 -0.7459 -2.0705 48 1 4.2250 2.5219 -5.1180 49 1 3.4299 1.4103 -6.2587 50 1 2.4791 2.2037 -4.9804 51 1 5.8577 0.7574 -4.6118 52 1 5.3368 -0.7939 -3.9114 53 1 5.9978 -1.0661 -6.2859 54 1 4.2644 -1.4047 -6.0621 55 1 4.7854 0.1466 -6.7624 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001546408216.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:10:05 Heat of formation + Delta-G solvation = 12.904682 kcal Electronic energy + Delta-G solvation = -32987.309229 eV Core-core repulsion = 29060.343883 eV Total energy + Delta-G solvation = -3926.965345 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.242 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -43.90563 -40.31994 -39.04199 -36.13443 -35.59344 -35.07592 -34.24754 -32.15342 -30.76499 -30.01047 -29.47728 -28.26532 -27.25013 -26.76549 -25.82667 -24.80312 -23.42799 -22.92634 -21.18443 -21.05681 -20.33081 -18.54796 -18.12625 -17.51893 -17.22052 -16.94822 -16.49060 -16.13678 -15.90949 -15.77511 -15.37455 -15.23352 -14.95160 -14.87671 -14.54530 -14.31848 -13.94880 -13.56185 -13.53649 -13.28881 -13.15530 -13.02095 -12.97537 -12.90910 -12.81661 -12.69324 -12.67598 -12.57278 -12.38374 -12.19796 -12.15916 -12.13030 -12.00382 -11.96214 -11.88668 -11.57613 -11.37410 -11.30403 -11.16613 -10.78404 -10.48676 -10.41532 -10.24957 -8.99987 -8.10357 -6.25314 0.96278 1.41443 1.43748 1.47046 1.56993 2.01720 2.42329 3.06330 3.19472 3.23237 3.44013 3.53666 3.63384 3.77521 3.96284 4.05636 4.10226 4.21247 4.28804 4.37777 4.42425 4.50258 4.56235 4.57206 4.62939 4.69049 4.69851 4.72605 4.77416 4.86311 4.93484 4.97391 5.00459 5.01933 5.05499 5.12365 5.17133 5.18828 5.23931 5.27040 5.29830 5.33733 5.34590 5.37065 5.51772 5.57039 5.62330 5.66241 5.69610 5.92681 6.14615 6.25662 6.68386 6.85193 6.87391 7.43661 7.99334 8.96473 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.010114 B = 0.004549 C = 0.003423 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2767.700540 B = 6153.950849 C = 8179.066205 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.024 4.024 3 C 0.188 3.812 4 N -0.347 5.347 5 N -0.369 5.369 6 C 0.365 3.635 7 N -0.446 5.446 8 C 0.037 3.963 9 C 0.246 3.754 10 H -0.009 1.009 11 C -0.162 4.162 12 C -0.517 4.517 13 H 0.074 0.926 14 C 0.010 3.990 15 N -0.921 5.921 16 Si 0.967 3.033 17 H -0.257 1.257 18 H -0.282 1.282 19 H -0.286 1.286 20 N -0.462 5.462 21 C 0.075 3.925 22 C 0.135 3.865 23 C -0.127 4.127 24 O -0.562 6.562 25 C -0.098 4.098 26 H 0.104 0.896 27 C -0.157 4.157 28 C -0.116 4.116 29 C -0.149 4.149 30 H 0.097 0.903 31 H 0.038 0.962 32 H 0.059 0.941 33 H 0.110 0.890 34 H 0.095 0.905 35 H 0.021 0.979 36 H 0.090 0.910 37 H 0.082 0.918 38 H 0.027 0.973 39 H 0.048 0.952 40 H 0.056 0.944 41 H 0.261 0.739 42 H 0.131 0.869 43 H 0.109 0.891 44 H 0.016 0.984 45 H 0.058 0.942 46 H 0.077 0.923 47 H 0.386 0.614 48 H 0.047 0.953 49 H 0.076 0.924 50 H 0.064 0.936 51 H 0.047 0.953 52 H 0.063 0.937 53 H 0.050 0.950 54 H 0.065 0.935 55 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.153 -20.434 -15.994 27.516 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.064 4.064 3 C -0.082 4.082 4 N -0.186 5.186 5 N -0.212 5.212 6 C 0.007 3.993 7 N -0.170 5.170 8 C -0.109 4.109 9 C 0.139 3.861 10 H 0.009 0.991 11 C -0.222 4.222 12 C -0.555 4.555 13 H 0.092 0.908 14 C -0.189 4.189 15 N -0.561 5.561 16 Si 0.792 3.208 17 H -0.180 1.180 18 H -0.208 1.208 19 H -0.212 1.212 20 N -0.156 5.156 21 C -0.047 4.047 22 C 0.094 3.906 23 C -0.184 4.184 24 O -0.371 6.371 25 C -0.117 4.117 26 H 0.122 0.878 27 C -0.214 4.214 28 C -0.154 4.154 29 C -0.206 4.206 30 H 0.115 0.885 31 H 0.057 0.943 32 H 0.078 0.922 33 H 0.128 0.872 34 H 0.114 0.886 35 H 0.039 0.961 36 H 0.109 0.891 37 H 0.100 0.900 38 H 0.046 0.954 39 H 0.066 0.934 40 H 0.075 0.925 41 H 0.070 0.930 42 H 0.149 0.851 43 H 0.127 0.873 44 H 0.036 0.964 45 H 0.077 0.923 46 H 0.096 0.904 47 H 0.236 0.764 48 H 0.066 0.934 49 H 0.095 0.905 50 H 0.083 0.917 51 H 0.066 0.934 52 H 0.081 0.919 53 H 0.069 0.931 54 H 0.084 0.916 55 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -8.231 -19.636 -14.572 25.801 hybrid contribution 0.069 1.010 -0.484 1.122 sum -8.162 -18.626 -15.056 25.303 Atomic orbital electron populations 1.21737 0.92620 1.03752 1.01796 1.20171 0.96971 0.83635 1.05577 1.25454 1.02017 0.98770 0.81931 1.73824 1.18714 0.99464 1.26559 1.74653 1.22072 1.14418 1.10080 1.22998 0.98451 0.88354 0.89478 1.59294 1.26014 1.07482 1.24185 1.22426 0.91414 1.00231 0.96878 1.18831 0.90664 0.87154 0.89410 0.99067 1.22344 0.98417 1.00965 1.00427 1.21342 1.35197 1.05385 0.93582 0.90832 1.25789 0.96481 1.00518 0.96070 1.70109 1.43001 1.32194 1.10755 0.85369 0.77587 0.78424 0.79401 1.18016 1.20827 1.21211 1.46115 1.50503 1.09467 1.09498 1.23097 1.00624 1.03160 0.77779 1.21461 0.92198 0.86780 0.90180 1.21686 0.98361 0.97748 1.00626 1.86729 1.59921 1.28471 1.61942 1.21703 0.99418 0.98878 0.91677 0.87809 1.22036 1.01907 0.97480 1.00016 1.21508 0.96160 0.99900 0.97822 1.21794 1.01906 1.00949 0.95932 0.88465 0.94311 0.92228 0.87169 0.88627 0.96053 0.89133 0.89989 0.95421 0.93365 0.92517 0.93024 0.85080 0.87311 0.96443 0.92266 0.90402 0.76402 0.93367 0.90514 0.91703 0.93420 0.91869 0.93071 0.91595 0.92221 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.11 9.90 71.99 0.71 -1.40 16 2 C -0.02 -0.44 6.17 29.85 0.18 -0.26 16 3 C 0.19 5.97 7.01 137.64 0.97 6.94 16 4 N -0.35 -15.10 12.18 -49.55 -0.60 -15.70 16 5 N -0.37 -18.21 8.95 -58.00 -0.52 -18.73 16 6 C 0.36 15.46 5.20 260.11 1.35 16.81 16 7 N -0.45 -19.30 3.93 -711.00 -2.79 -22.09 16 8 C 0.04 1.35 8.69 127.69 1.11 2.46 16 9 C 0.25 13.27 2.09 44.17 0.09 13.36 16 10 H -0.01 -0.56 8.11 -2.39 -0.02 -0.58 16 11 C -0.16 -8.88 8.27 71.98 0.60 -8.28 16 12 C -0.52 -28.13 7.92 25.60 0.20 -27.93 16 13 H 0.07 3.77 6.75 -2.91 -0.02 3.75 16 14 C 0.01 0.58 5.30 84.65 0.45 1.03 16 15 N -0.92 -55.43 11.32 21.44 0.24 -55.19 16 16 Si 0.97 43.51 29.54 68.60 2.03 45.54 16 17 H -0.26 -10.75 7.11 99.48 0.71 -10.05 16 18 H -0.28 -12.52 7.11 99.48 0.71 -11.82 16 19 H -0.29 -12.87 7.11 99.48 0.71 -12.17 16 20 N -0.46 -14.41 2.46 -514.84 -1.26 -15.67 16 21 C 0.08 1.50 4.53 86.38 0.39 1.90 16 22 C 0.14 2.70 0.63 -10.79 -0.01 2.69 16 23 C -0.13 -3.83 7.03 71.98 0.51 -3.33 16 24 O -0.56 -11.41 11.23 -148.98 -1.67 -13.08 16 25 C -0.10 -1.25 1.89 -10.79 -0.02 -1.27 16 26 H 0.10 0.74 8.14 -2.39 -0.02 0.72 16 27 C -0.16 -2.09 8.24 71.98 0.59 -1.49 16 28 C -0.12 -1.73 4.83 30.59 0.15 -1.58 16 29 C -0.15 -1.66 9.67 71.98 0.70 -0.96 16 30 H 0.10 0.86 8.14 -2.39 -0.02 0.84 16 31 H 0.04 0.79 8.14 -2.39 -0.02 0.77 16 32 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 33 H 0.11 1.20 5.57 -2.38 -0.01 1.19 16 34 H 0.10 1.81 8.14 -2.39 -0.02 1.79 16 35 H 0.02 0.82 6.36 -2.39 -0.02 0.81 16 36 H 0.09 3.30 6.49 -2.39 -0.02 3.29 16 37 H 0.08 2.25 5.99 -2.39 -0.01 2.23 16 38 H 0.03 1.40 6.42 -2.39 -0.02 1.39 16 39 H 0.05 2.67 5.38 -2.39 -0.01 2.66 16 40 H 0.06 3.42 6.07 -2.39 -0.01 3.41 16 41 H 0.26 14.89 8.31 -92.71 -0.77 14.12 16 42 H 0.13 1.47 7.68 -2.39 -0.02 1.45 16 43 H 0.11 2.15 4.34 -2.39 -0.01 2.14 16 44 H 0.02 0.68 6.68 -2.39 -0.02 0.67 16 45 H 0.06 1.72 6.24 -2.39 -0.01 1.70 16 46 H 0.08 2.39 6.70 -2.39 -0.02 2.37 16 47 H 0.39 3.84 7.57 -74.05 -0.56 3.28 16 48 H 0.05 0.85 6.57 -2.39 -0.02 0.84 16 49 H 0.08 0.79 6.57 -2.38 -0.02 0.78 16 50 H 0.06 0.75 6.47 -2.39 -0.02 0.74 16 51 H 0.05 0.91 6.57 -2.39 -0.02 0.89 16 52 H 0.06 1.01 7.53 -2.39 -0.02 1.00 16 53 H 0.05 0.60 8.14 -2.38 -0.02 0.58 16 54 H 0.07 0.56 8.14 -2.39 -0.02 0.54 16 55 H 0.06 0.64 6.57 -2.39 -0.02 0.62 16 Total: -1.00 -79.25 400.23 3.73 -75.52 By element: Atomic # 1 Polarization: 20.38 SS G_CDS: 0.34 Total: 20.72 kcal Atomic # 6 Polarization: -9.29 SS G_CDS: 7.97 Total: -1.32 kcal Atomic # 7 Polarization: -122.44 SS G_CDS: -4.94 Total: -127.38 kcal Atomic # 8 Polarization: -11.41 SS G_CDS: -1.67 Total: -13.08 kcal Atomic # 14 Polarization: 43.51 SS G_CDS: 2.03 Total: 45.54 kcal Total: -79.25 3.73 -75.52 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001546408216.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.423 kcal (2) G-P(sol) polarization free energy of solvation -79.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.177 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.727 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.518 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.905 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds