Wall clock time and date at job start Tue Mar 31 2020 23:10:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50703 * 109.46726 * 2 1 4 4 N 1.30296 * 126.34639 * 277.32647 * 3 2 1 5 5 N 1.28523 * 110.05420 * 180.02562 * 4 3 2 6 6 C 1.31221 * 109.86041 * 359.73946 * 5 4 3 7 7 N 1.38583 * 126.47372 * 180.25534 * 6 5 4 8 8 C 1.46900 * 111.00281 * 250.44474 * 7 6 5 9 9 C 1.46904 * 110.99818 * 14.40354 * 7 6 5 10 10 H 1.09002 * 109.47194 * 54.99791 * 9 7 6 11 11 C 1.53002 * 109.46701 * 294.99280 * 9 7 6 12 12 C 1.50701 * 109.46920 * 174.99659 * 9 7 6 13 13 H 1.08005 * 120.00149 * 359.97438 * 12 9 7 14 14 C 1.37868 * 119.99920 * 179.97438 * 12 9 7 15 15 N 1.31523 * 120.00326 * 0.02562 * 14 12 9 16 16 Si 1.86803 * 120.00217 * 180.02562 * 14 12 9 17 17 H 1.48500 * 109.47157 * 59.99708 * 16 14 12 18 18 H 1.48498 * 109.47140 * 180.02562 * 16 14 12 19 19 H 1.48504 * 109.46979 * 300.00196 * 16 14 12 20 20 N 1.36449 * 107.05054 * 0.41050 * 6 5 4 21 21 C 1.46507 * 127.13539 * 179.87289 * 20 6 5 22 22 C 1.53005 * 109.46851 * 84.57077 * 21 20 6 23 23 C 1.52995 * 109.47776 * 305.24600 * 22 21 20 24 24 O 1.42897 * 109.46678 * 65.24975 * 22 21 20 25 25 C 1.53003 * 109.46930 * 185.24340 * 22 21 20 26 26 H 1.08997 * 109.47224 * 60.00389 * 25 22 21 27 27 C 1.53001 * 109.47213 * 300.00360 * 25 22 21 28 28 C 1.53001 * 109.47349 * 180.02562 * 25 22 21 29 29 C 1.52994 * 109.47075 * 185.00253 * 28 25 22 30 30 H 1.08993 * 109.47548 * 306.54449 * 1 2 3 31 31 H 1.08997 * 109.47150 * 66.55126 * 1 2 3 32 32 H 1.09005 * 109.47014 * 186.54434 * 1 2 3 33 33 H 1.08993 * 109.47327 * 239.99718 * 2 1 3 34 34 H 1.09000 * 109.46851 * 119.99159 * 2 1 3 35 35 H 1.09000 * 109.46635 * 64.02310 * 8 7 6 36 36 H 1.09000 * 109.47000 * 184.02554 * 8 7 6 37 37 H 1.09006 * 109.46939 * 304.02394 * 8 7 6 38 38 H 1.08995 * 109.47058 * 300.00182 * 11 9 7 39 39 H 1.09002 * 109.46766 * 60.00638 * 11 9 7 40 40 H 1.09002 * 109.46659 * 179.97438 * 11 9 7 41 41 H 0.96993 * 120.00320 * 179.97438 * 15 14 12 42 42 H 1.09003 * 109.46983 * 324.57888 * 21 20 6 43 43 H 1.09000 * 109.47253 * 204.57407 * 21 20 6 44 44 H 1.08990 * 109.47458 * 180.02562 * 23 22 21 45 45 H 1.09004 * 109.47027 * 300.00259 * 23 22 21 46 46 H 1.08998 * 109.47078 * 59.99730 * 23 22 21 47 47 H 0.96701 * 114.00608 * 55.57576 * 24 22 21 48 48 H 1.08998 * 109.47187 * 180.02562 * 27 25 22 49 49 H 1.08997 * 109.47049 * 300.00136 * 27 25 22 50 50 H 1.09003 * 109.46996 * 59.99739 * 27 25 22 51 51 H 1.09001 * 109.46528 * 304.99971 * 28 25 22 52 52 H 1.09003 * 109.47074 * 64.99640 * 28 25 22 53 53 H 1.09006 * 109.46587 * 179.97438 * 29 28 25 54 54 H 1.09001 * 109.47212 * 299.99299 * 29 28 25 55 55 H 1.08997 * 109.47321 * 60.00009 * 29 28 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4209 0.0000 4 7 2.1634 2.1935 -1.0409 5 7 2.6184 3.3411 -0.6834 6 6 2.7981 3.3642 0.6163 7 7 3.2707 4.4312 1.3638 8 6 4.6230 4.1614 1.8702 9 6 3.2392 5.6755 0.5835 10 1 2.2305 5.8416 0.2050 11 6 4.2132 5.5654 -0.5914 12 6 3.6421 6.8306 1.4635 13 1 3.8957 6.6578 2.4990 14 6 3.6868 8.1080 0.9467 15 7 3.3775 8.3186 -0.3141 16 14 4.1869 9.5398 2.0374 17 1 5.5610 9.3130 2.5529 18 1 4.1550 10.7976 1.2486 19 1 3.2418 9.6470 3.1778 20 7 2.4353 2.1380 1.0922 21 6 2.4651 1.6857 2.4854 22 6 1.1777 2.1186 3.1898 23 6 0.9966 3.6302 3.0379 24 8 0.0634 1.4439 2.6023 25 6 1.2644 1.7620 4.6752 26 1 2.1144 2.2766 5.1233 27 6 1.4454 0.2504 4.8271 28 6 -0.0232 2.1943 5.3795 29 6 0.1125 1.9521 6.8840 30 1 -0.3634 0.6119 0.8255 31 1 -0.3633 0.4089 -0.9428 32 1 -0.3633 -1.0210 0.1171 33 1 1.8933 -0.5138 -0.8899 34 1 1.8932 -0.5137 0.8901 35 1 5.3128 4.0668 1.0315 36 1 4.9414 4.9832 2.5116 37 1 4.6181 3.2341 2.4431 38 1 5.2217 5.3993 -0.2128 39 1 3.9217 4.7300 -1.2279 40 1 4.1894 6.4885 -1.1706 41 1 3.4086 9.2174 -0.6776 42 1 3.3229 2.1276 2.9925 43 1 2.5467 0.5991 2.5130 44 1 0.0797 3.9386 3.5401 45 1 1.8466 4.1448 3.4860 46 1 0.9348 3.8842 1.9797 47 1 0.1428 0.4802 2.6017 48 1 1.5068 -0.0037 5.8853 49 1 0.5955 -0.2642 4.3789 50 1 2.3626 -0.0579 4.3252 51 1 -0.1990 3.2544 5.1965 52 1 -0.8613 1.6148 4.9922 53 1 -0.8047 2.2606 7.3858 54 1 0.2883 0.8921 7.0670 55 1 0.9505 2.5316 7.2712 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001546408217.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:10:09 Heat of formation + Delta-G solvation = 18.475731 kcal Electronic energy + Delta-G solvation = -33124.708158 eV Core-core repulsion = 29197.984391 eV Total energy + Delta-G solvation = -3926.723767 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.242 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -43.93880 -40.33418 -39.05498 -36.06433 -35.47702 -35.02784 -34.26777 -31.89949 -30.77558 -30.35385 -29.99716 -28.14868 -27.25011 -26.71702 -25.32021 -24.81204 -23.42683 -22.79584 -21.20040 -21.02453 -20.66300 -18.53032 -18.06686 -17.68167 -17.22695 -16.82151 -16.52590 -16.15166 -15.92881 -15.79681 -15.34645 -15.26617 -14.97909 -14.77672 -14.52813 -14.35399 -13.77574 -13.48771 -13.42063 -13.27535 -13.22288 -13.09039 -12.97949 -12.90948 -12.73081 -12.66639 -12.61352 -12.57932 -12.37240 -12.27254 -12.16911 -12.12990 -12.02154 -11.94372 -11.87739 -11.53997 -11.41016 -11.26200 -11.02977 -10.79232 -10.46842 -10.43117 -10.25530 -8.99361 -8.09880 -6.25042 0.95059 1.40640 1.45888 1.47259 1.54571 2.01197 2.42599 3.06554 3.19668 3.23224 3.43623 3.54605 3.62896 3.80346 3.97755 4.03835 4.06427 4.19528 4.27499 4.41193 4.44165 4.51647 4.56716 4.59528 4.68213 4.69512 4.72271 4.75549 4.81752 4.87181 4.90563 4.99286 5.01029 5.04503 5.07353 5.14322 5.16748 5.18685 5.23863 5.27911 5.28624 5.34240 5.46126 5.50535 5.53475 5.59207 5.61655 5.66013 5.69374 5.92322 6.14023 6.25591 6.67880 6.83072 6.84999 7.43878 7.98846 8.96456 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.010764 B = 0.004468 C = 0.003443 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2600.720837 B = 6265.363338 C = 8130.558895 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.024 4.024 3 C 0.183 3.817 4 N -0.346 5.346 5 N -0.369 5.369 6 C 0.367 3.633 7 N -0.445 5.445 8 C 0.036 3.964 9 C 0.246 3.754 10 H -0.008 1.008 11 C -0.162 4.162 12 C -0.519 4.519 13 H 0.073 0.927 14 C 0.011 3.989 15 N -0.921 5.921 16 Si 0.967 3.033 17 H -0.264 1.264 18 H -0.290 1.290 19 H -0.270 1.270 20 N -0.464 5.464 21 C 0.075 3.925 22 C 0.137 3.863 23 C -0.127 4.127 24 O -0.556 6.556 25 C -0.103 4.103 26 H 0.082 0.918 27 C -0.156 4.156 28 C -0.114 4.114 29 C -0.149 4.149 30 H 0.070 0.930 31 H 0.033 0.967 32 H 0.098 0.902 33 H 0.098 0.902 34 H 0.114 0.886 35 H 0.022 0.978 36 H 0.090 0.910 37 H 0.082 0.918 38 H 0.027 0.973 39 H 0.047 0.953 40 H 0.056 0.944 41 H 0.261 0.739 42 H 0.107 0.893 43 H 0.136 0.864 44 H 0.055 0.945 45 H 0.074 0.926 46 H 0.022 0.978 47 H 0.383 0.617 48 H 0.073 0.927 49 H 0.068 0.932 50 H 0.070 0.930 51 H 0.045 0.955 52 H 0.064 0.936 53 H 0.050 0.950 54 H 0.069 0.931 55 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.105 -22.663 15.026 27.369 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.064 4.064 3 C -0.086 4.086 4 N -0.184 5.184 5 N -0.212 5.212 6 C 0.010 3.990 7 N -0.169 5.169 8 C -0.111 4.111 9 C 0.140 3.860 10 H 0.010 0.990 11 C -0.222 4.222 12 C -0.557 4.557 13 H 0.091 0.909 14 C -0.188 4.188 15 N -0.560 5.560 16 Si 0.792 3.208 17 H -0.189 1.189 18 H -0.216 1.216 19 H -0.195 1.195 20 N -0.159 5.159 21 C -0.047 4.047 22 C 0.096 3.904 23 C -0.184 4.184 24 O -0.365 6.365 25 C -0.123 4.123 26 H 0.100 0.900 27 C -0.213 4.213 28 C -0.152 4.152 29 C -0.207 4.207 30 H 0.089 0.911 31 H 0.052 0.948 32 H 0.117 0.883 33 H 0.117 0.883 34 H 0.132 0.868 35 H 0.040 0.960 36 H 0.108 0.892 37 H 0.101 0.899 38 H 0.046 0.954 39 H 0.066 0.934 40 H 0.075 0.925 41 H 0.070 0.930 42 H 0.125 0.875 43 H 0.153 0.847 44 H 0.074 0.926 45 H 0.093 0.907 46 H 0.041 0.959 47 H 0.234 0.766 48 H 0.092 0.908 49 H 0.087 0.913 50 H 0.089 0.911 51 H 0.063 0.937 52 H 0.083 0.917 53 H 0.070 0.930 54 H 0.088 0.912 55 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -3.638 -21.377 13.796 25.701 hybrid contribution 0.779 0.825 0.409 1.206 sum -2.859 -20.552 14.205 25.146 Atomic orbital electron populations 1.21946 0.92922 1.03915 1.02427 1.20176 0.97115 0.83420 1.05669 1.25529 1.01929 0.98962 0.82153 1.73828 1.18940 0.98883 1.26726 1.74667 1.22297 1.14901 1.09379 1.22983 1.00900 0.86388 0.88772 1.59372 1.23798 0.99287 1.34438 1.22444 0.86461 1.02735 0.99448 1.18819 0.93769 0.83654 0.89753 0.99007 1.22344 0.97929 1.01462 1.00427 1.21279 1.46104 0.91330 0.96989 0.90893 1.25785 0.95240 1.01542 0.96233 1.70099 1.49209 1.21990 1.14723 0.85479 0.79169 0.77749 0.78417 1.18879 1.21593 1.19502 1.46167 1.49755 1.10322 1.09647 1.23115 1.01176 1.03130 0.77247 1.21425 0.84373 0.92389 0.92229 1.21691 1.02161 0.93938 1.00642 1.86702 1.43142 1.24038 1.82635 1.21670 0.99407 0.98801 0.92391 0.90002 1.22014 1.02603 0.92957 1.03706 1.21482 0.97234 1.00717 0.95752 1.21805 1.01522 1.02382 0.94945 0.91092 0.94751 0.88340 0.88343 0.86800 0.95971 0.89167 0.89921 0.95411 0.93399 0.92498 0.93014 0.87502 0.84653 0.92633 0.90683 0.95889 0.76638 0.90829 0.91304 0.91128 0.93653 0.91684 0.93038 0.91205 0.92959 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.65 9.67 71.98 0.70 -1.95 16 2 C -0.02 -0.44 6.37 29.85 0.19 -0.25 16 3 C 0.18 5.75 7.32 137.64 1.01 6.76 16 4 N -0.35 -14.87 12.18 -49.54 -0.60 -15.47 16 5 N -0.37 -18.05 8.96 -58.00 -0.52 -18.57 16 6 C 0.37 15.37 4.82 260.11 1.26 16.62 16 7 N -0.45 -19.10 3.13 -710.97 -2.23 -21.33 16 8 C 0.04 1.29 8.75 127.69 1.12 2.41 16 9 C 0.25 13.23 2.08 44.17 0.09 13.32 16 10 H -0.01 -0.51 8.11 -2.39 -0.02 -0.53 16 11 C -0.16 -8.84 8.27 71.98 0.60 -8.24 16 12 C -0.52 -28.16 7.94 25.60 0.20 -27.96 16 13 H 0.07 3.72 6.75 -2.91 -0.02 3.70 16 14 C 0.01 0.62 5.30 84.65 0.45 1.06 16 15 N -0.92 -55.32 11.32 21.45 0.24 -55.07 16 16 Si 0.97 43.43 29.54 68.60 2.03 45.46 16 17 H -0.26 -11.22 7.11 99.48 0.71 -10.51 16 18 H -0.29 -13.07 7.11 99.48 0.71 -12.36 16 19 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 20 N -0.46 -14.25 2.48 -514.82 -1.28 -15.53 16 21 C 0.08 1.47 4.63 86.38 0.40 1.87 16 22 C 0.14 2.77 0.60 -10.79 -0.01 2.77 16 23 C -0.13 -3.95 7.19 71.98 0.52 -3.43 16 24 O -0.56 -10.96 10.04 -148.98 -1.50 -12.46 16 25 C -0.10 -1.45 1.81 -10.79 -0.02 -1.47 16 26 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 27 C -0.16 -1.14 8.29 71.98 0.60 -0.55 16 28 C -0.11 -1.85 4.97 30.59 0.15 -1.70 16 29 C -0.15 -1.92 9.67 71.98 0.70 -1.23 16 30 H 0.07 1.38 4.64 -2.39 -0.01 1.37 16 31 H 0.03 0.78 8.14 -2.39 -0.02 0.76 16 32 H 0.10 0.95 8.14 -2.38 -0.02 0.94 16 33 H 0.10 1.69 8.14 -2.39 -0.02 1.67 16 34 H 0.11 1.07 6.99 -2.39 -0.02 1.05 16 35 H 0.02 0.85 6.28 -2.39 -0.01 0.83 16 36 H 0.09 3.26 6.53 -2.39 -0.02 3.24 16 37 H 0.08 2.24 5.83 -2.38 -0.01 2.22 16 38 H 0.03 1.40 6.38 -2.39 -0.02 1.39 16 39 H 0.05 2.64 5.40 -2.39 -0.01 2.63 16 40 H 0.06 3.42 6.07 -2.39 -0.01 3.41 16 41 H 0.26 14.96 8.31 -92.71 -0.77 14.19 16 42 H 0.11 2.02 5.88 -2.39 -0.01 2.01 16 43 H 0.14 1.43 5.57 -2.39 -0.01 1.42 16 44 H 0.05 1.70 6.32 -2.39 -0.02 1.68 16 45 H 0.07 2.41 7.71 -2.39 -0.02 2.39 16 46 H 0.02 0.92 5.91 -2.39 -0.01 0.91 16 47 H 0.38 4.23 6.41 -74.06 -0.47 3.76 16 48 H 0.07 0.48 6.56 -2.39 -0.02 0.46 16 49 H 0.07 0.38 6.88 -2.39 -0.02 0.37 16 50 H 0.07 0.33 6.55 -2.39 -0.02 0.32 16 51 H 0.04 0.95 6.17 -2.39 -0.01 0.93 16 52 H 0.06 1.07 7.83 -2.39 -0.02 1.05 16 53 H 0.05 0.67 8.14 -2.38 -0.02 0.65 16 54 H 0.07 0.68 6.56 -2.39 -0.02 0.66 16 55 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 Total: -1.00 -78.05 395.15 4.52 -73.53 By element: Atomic # 1 Polarization: 20.98 SS G_CDS: 0.43 Total: 21.41 kcal Atomic # 6 Polarization: -9.91 SS G_CDS: 7.94 Total: -1.97 kcal Atomic # 7 Polarization: -121.59 SS G_CDS: -4.39 Total: -125.98 kcal Atomic # 8 Polarization: -10.96 SS G_CDS: -1.50 Total: -12.46 kcal Atomic # 14 Polarization: 43.43 SS G_CDS: 2.03 Total: 45.46 kcal Total: -78.05 4.52 -73.53 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001546408217.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.007 kcal (2) G-P(sol) polarization free energy of solvation -78.048 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.959 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.517 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.531 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.476 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds