Wall clock time and date at job start Tue Mar 31 2020 23:10:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50696 * 109.47437 * 2 1 4 4 N 1.30303 * 126.34720 * 285.33004 * 3 2 1 5 5 N 1.28524 * 110.05253 * 180.31114 * 4 3 2 6 6 C 1.31214 * 109.85914 * 359.71630 * 5 4 3 7 7 N 1.38584 * 126.47306 * 179.97438 * 6 5 4 8 8 C 1.46901 * 111.00308 * 250.15654 * 7 6 5 9 9 C 1.46899 * 111.00035 * 14.10832 * 7 6 5 10 10 H 1.09002 * 109.47093 * 55.00014 * 9 7 6 11 11 C 1.53000 * 109.47049 * 295.00402 * 9 7 6 12 12 C 1.50695 * 109.47722 * 175.00080 * 9 7 6 13 13 H 1.08003 * 119.99612 * 0.02562 * 12 9 7 14 14 C 1.37876 * 120.00523 * 179.97438 * 12 9 7 15 15 N 1.31511 * 119.99806 * 359.97438 * 14 12 9 16 16 Si 1.86798 * 119.99869 * 180.02562 * 14 12 9 17 17 H 1.48504 * 109.47570 * 0.02562 * 16 14 12 18 18 H 1.48501 * 109.47113 * 120.00342 * 16 14 12 19 19 H 1.48501 * 109.47245 * 239.99661 * 16 14 12 20 20 N 1.36452 * 107.05735 * 0.02562 * 6 5 4 21 21 C 1.46499 * 127.13673 * 179.97438 * 20 6 5 22 22 C 1.52998 * 109.47227 * 83.25405 * 21 20 6 23 23 C 1.53000 * 109.47159 * 54.36989 * 22 21 20 24 24 O 1.42894 * 109.47329 * 294.36939 * 22 21 20 25 25 C 1.52995 * 109.47211 * 174.36731 * 22 21 20 26 26 H 1.09003 * 109.47674 * 300.00350 * 25 22 21 27 27 C 1.53001 * 109.47187 * 60.00235 * 25 22 21 28 28 C 1.52998 * 109.47211 * 179.97438 * 25 22 21 29 29 C 1.53008 * 109.47364 * 175.00246 * 28 25 22 30 30 H 1.08996 * 109.47149 * 181.97480 * 1 2 3 31 31 H 1.08995 * 109.46873 * 301.98055 * 1 2 3 32 32 H 1.08998 * 109.46531 * 61.97847 * 1 2 3 33 33 H 1.09000 * 109.47374 * 239.99751 * 2 1 3 34 34 H 1.09002 * 109.47135 * 120.00424 * 2 1 3 35 35 H 1.09001 * 109.47082 * 58.22591 * 8 7 6 36 36 H 1.08996 * 109.47303 * 178.23197 * 8 7 6 37 37 H 1.09002 * 109.46777 * 298.23287 * 8 7 6 38 38 H 1.09003 * 109.47642 * 180.02562 * 11 9 7 39 39 H 1.09002 * 109.46856 * 299.99757 * 11 9 7 40 40 H 1.08995 * 109.47334 * 59.99643 * 11 9 7 41 41 H 0.96997 * 119.99933 * 179.97438 * 15 14 12 42 42 H 1.08997 * 109.47401 * 323.25513 * 21 20 6 43 43 H 1.09001 * 109.47340 * 203.25620 * 21 20 6 44 44 H 1.09007 * 109.47060 * 296.30542 * 23 22 21 45 45 H 1.09001 * 109.47517 * 56.30138 * 23 22 21 46 46 H 1.08996 * 109.47335 * 176.30606 * 23 22 21 47 47 H 0.96698 * 113.99959 * 300.00455 * 24 22 21 48 48 H 1.08998 * 109.47589 * 179.97438 * 27 25 22 49 49 H 1.09004 * 109.46826 * 300.00049 * 27 25 22 50 50 H 1.09006 * 109.47256 * 60.00037 * 27 25 22 51 51 H 1.09000 * 109.47528 * 295.00375 * 28 25 22 52 52 H 1.09005 * 109.47094 * 55.00103 * 28 25 22 53 53 H 1.08997 * 109.47079 * 180.02562 * 29 28 25 54 54 H 1.09004 * 109.46734 * 300.00056 * 29 28 25 55 55 H 1.08995 * 109.47233 * 59.99839 * 29 28 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 7 2.0283 2.2413 -1.0122 5 7 2.5354 3.3705 -0.6661 6 6 2.8876 3.3325 0.5973 7 7 3.4687 4.3611 1.3218 8 6 4.8713 4.0572 1.6355 9 6 3.3543 5.6390 0.6064 10 1 2.3075 5.8306 0.3701 11 6 4.1655 5.5725 -0.6891 12 6 3.8848 6.7503 1.4749 13 1 4.2690 6.5294 2.4598 14 6 3.8807 8.0490 1.0119 15 7 3.4143 8.3178 -0.1880 16 14 4.5391 9.4264 2.0883 17 1 5.0038 8.8646 3.3821 18 1 5.6753 10.0915 1.4013 19 1 3.4621 10.4181 2.3370 20 7 2.5748 2.0885 1.0628 21 6 2.7826 1.5734 2.4183 22 6 1.6217 2.0108 3.3137 23 6 0.2979 1.5785 2.6799 24 8 1.6396 3.4324 3.4565 25 6 1.7651 1.3581 4.6900 26 1 1.7515 0.2736 4.5812 27 6 3.0889 1.7904 5.3239 28 6 0.6045 1.7960 5.5856 29 6 0.6784 1.0481 6.9184 30 1 -0.3633 -1.0270 0.0354 31 1 -0.3633 0.5443 0.8717 32 1 -0.3632 0.4828 -0.9072 33 1 1.8934 -0.5139 -0.8899 34 1 1.8934 -0.5139 0.8900 35 1 5.4230 3.8922 0.7100 36 1 5.3120 4.8941 2.1771 37 1 4.9194 3.1596 2.2521 38 1 4.0811 6.5209 -1.2199 39 1 5.2122 5.3808 -0.4529 40 1 3.7818 4.7688 -1.3174 41 1 3.4110 9.2315 -0.5136 42 1 3.7174 1.9670 2.8174 43 1 2.8296 0.4847 2.3901 44 1 0.1649 2.0942 1.7288 45 1 0.3105 0.5018 2.5106 46 1 -0.5248 1.8316 3.3485 47 1 2.4513 3.7777 3.8527 48 1 3.1910 1.3258 6.3047 49 1 3.9160 1.4787 4.6860 50 1 3.1026 2.8749 5.4329 51 1 0.6701 2.8688 5.7669 52 1 -0.3407 1.5680 5.0929 53 1 -0.1487 1.3598 7.5562 54 1 0.6127 -0.0247 6.7371 55 1 1.6235 1.2761 7.4111 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001546408218.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:10:14 Heat of formation + Delta-G solvation = 18.541825 kcal Electronic energy + Delta-G solvation = -33126.750911 eV Core-core repulsion = 29200.030011 eV Total energy + Delta-G solvation = -3926.720901 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.242 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -43.90288 -40.26727 -39.00682 -36.04651 -35.41338 -35.05042 -34.18114 -32.02431 -30.73286 -30.47138 -29.90169 -28.01946 -27.23255 -26.76188 -25.42688 -24.81860 -23.47906 -22.68581 -21.21005 -21.02705 -20.47429 -18.48668 -18.03637 -17.60192 -17.18806 -16.82868 -16.46109 -16.32621 -15.94572 -15.73526 -15.43022 -15.22379 -14.90949 -14.76670 -14.56995 -14.34558 -13.78808 -13.48920 -13.39989 -13.28462 -13.19542 -13.11956 -12.97525 -12.90018 -12.79167 -12.68980 -12.63573 -12.47103 -12.40819 -12.26468 -12.12539 -12.08655 -12.00335 -11.89254 -11.80261 -11.56970 -11.40493 -11.25825 -10.99022 -10.76862 -10.46708 -10.39084 -10.22669 -8.94801 -8.08383 -6.22772 0.97772 1.42701 1.44942 1.48246 1.58076 2.02674 2.43933 3.10634 3.21679 3.29283 3.49973 3.55478 3.67680 3.79906 3.98009 4.05264 4.06286 4.20071 4.29152 4.37701 4.39435 4.52986 4.56187 4.58723 4.62710 4.69674 4.72351 4.75656 4.76600 4.81635 4.86661 4.95975 4.99690 5.01921 5.03904 5.09648 5.16797 5.19028 5.21325 5.23674 5.25099 5.33915 5.37082 5.42790 5.53891 5.57538 5.58990 5.67866 5.71289 5.95872 6.16762 6.28324 6.71982 6.87689 6.93133 7.45824 8.00886 8.98585 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.010390 B = 0.004582 C = 0.003494 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2694.304257 B = 6109.557280 C = 8011.034957 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.026 4.026 3 C 0.174 3.826 4 N -0.342 5.342 5 N -0.374 5.374 6 C 0.376 3.624 7 N -0.439 5.439 8 C 0.037 3.963 9 C 0.247 3.753 10 H -0.010 1.010 11 C -0.161 4.161 12 C -0.514 4.514 13 H 0.075 0.925 14 C 0.008 3.992 15 N -0.923 5.923 16 Si 0.968 3.032 17 H -0.256 1.256 18 H -0.283 1.283 19 H -0.287 1.287 20 N -0.464 5.464 21 C 0.074 3.926 22 C 0.123 3.877 23 C -0.142 4.142 24 O -0.559 6.559 25 C -0.100 4.100 26 H 0.104 0.896 27 C -0.160 4.160 28 C -0.116 4.116 29 C -0.149 4.149 30 H 0.098 0.902 31 H 0.063 0.937 32 H 0.038 0.962 33 H 0.101 0.899 34 H 0.113 0.887 35 H 0.017 0.983 36 H 0.091 0.909 37 H 0.084 0.916 38 H 0.055 0.945 39 H 0.026 0.974 40 H 0.047 0.953 41 H 0.260 0.740 42 H 0.104 0.896 43 H 0.135 0.865 44 H 0.027 0.973 45 H 0.104 0.896 46 H 0.067 0.933 47 H 0.379 0.621 48 H 0.076 0.924 49 H 0.066 0.934 50 H 0.048 0.952 51 H 0.047 0.953 52 H 0.060 0.940 53 H 0.049 0.951 54 H 0.064 0.936 55 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.514 -23.270 14.438 27.427 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.065 4.065 3 C -0.095 4.095 4 N -0.180 5.180 5 N -0.217 5.217 6 C 0.018 3.982 7 N -0.162 5.162 8 C -0.110 4.110 9 C 0.141 3.859 10 H 0.008 0.992 11 C -0.221 4.221 12 C -0.552 4.552 13 H 0.093 0.907 14 C -0.190 4.190 15 N -0.562 5.562 16 Si 0.793 3.207 17 H -0.179 1.179 18 H -0.209 1.209 19 H -0.214 1.214 20 N -0.158 5.158 21 C -0.048 4.048 22 C 0.081 3.919 23 C -0.199 4.199 24 O -0.367 6.367 25 C -0.119 4.119 26 H 0.122 0.878 27 C -0.217 4.217 28 C -0.153 4.153 29 C -0.206 4.206 30 H 0.117 0.883 31 H 0.082 0.918 32 H 0.057 0.943 33 H 0.120 0.880 34 H 0.131 0.869 35 H 0.036 0.964 36 H 0.109 0.891 37 H 0.102 0.898 38 H 0.074 0.926 39 H 0.045 0.955 40 H 0.065 0.935 41 H 0.069 0.931 42 H 0.122 0.878 43 H 0.153 0.847 44 H 0.046 0.954 45 H 0.122 0.878 46 H 0.086 0.914 47 H 0.228 0.772 48 H 0.095 0.905 49 H 0.085 0.915 50 H 0.067 0.933 51 H 0.065 0.935 52 H 0.079 0.921 53 H 0.069 0.931 54 H 0.083 0.917 55 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -2.576 -22.587 13.124 26.250 hybrid contribution 1.166 1.320 0.531 1.840 sum -1.410 -21.267 13.654 25.312 Atomic orbital electron populations 1.22039 0.93202 1.03930 1.02376 1.20181 0.97005 0.83617 1.05736 1.25494 1.01216 0.99262 0.83526 1.73814 1.19469 0.98247 1.26476 1.74673 1.20896 1.16238 1.09940 1.22982 1.00532 0.85943 0.88730 1.59132 1.16502 0.99544 1.40998 1.22442 0.85861 1.02787 0.99934 1.18801 0.93976 0.83117 0.90009 0.99246 1.22343 0.97797 1.01546 1.00422 1.21352 1.40919 0.91314 1.01630 0.90672 1.25801 0.95678 1.01275 0.96264 1.70116 1.47261 1.20051 1.18789 0.85356 0.77549 0.78598 0.79168 1.17923 1.20919 1.21360 1.46151 1.47446 1.10284 1.11926 1.23131 1.01223 1.02381 0.78084 1.21657 0.94256 0.82103 0.93888 1.22081 0.96195 1.02051 0.99590 1.86688 1.44155 1.20314 1.85516 1.21691 0.96305 1.01489 0.92424 0.87829 1.22019 0.96118 1.01522 1.02038 1.21505 0.97821 0.99953 0.96028 1.21801 1.01857 1.00600 0.96325 0.88334 0.91807 0.94268 0.88048 0.86913 0.96428 0.89063 0.89783 0.92570 0.95498 0.93486 0.93111 0.87822 0.84667 0.95434 0.87795 0.91424 0.77200 0.90522 0.91541 0.93306 0.93458 0.92102 0.93148 0.91662 0.92192 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.72 9.56 71.98 0.69 -2.03 16 2 C -0.03 -0.47 6.05 29.85 0.18 -0.29 16 3 C 0.17 5.44 6.11 137.64 0.84 6.28 16 4 N -0.34 -14.67 12.18 -49.54 -0.60 -15.27 16 5 N -0.37 -18.38 8.97 -58.00 -0.52 -18.90 16 6 C 0.38 15.86 6.30 260.11 1.64 17.50 16 7 N -0.44 -18.84 4.26 -711.01 -3.03 -21.87 16 8 C 0.04 1.30 8.65 127.69 1.10 2.41 16 9 C 0.25 13.39 2.08 44.17 0.09 13.48 16 10 H -0.01 -0.68 8.11 -2.39 -0.02 -0.70 16 11 C -0.16 -8.86 8.27 71.98 0.60 -8.27 16 12 C -0.51 -27.98 7.86 25.60 0.20 -27.78 16 13 H 0.08 3.83 6.78 -2.91 -0.02 3.81 16 14 C 0.01 0.47 5.30 84.65 0.45 0.92 16 15 N -0.92 -55.83 11.32 21.45 0.24 -55.58 16 16 Si 0.97 43.70 29.54 68.60 2.03 45.73 16 17 H -0.26 -10.71 7.11 99.48 0.71 -10.00 16 18 H -0.28 -12.60 7.11 99.48 0.71 -11.90 16 19 H -0.29 -13.03 7.11 99.48 0.71 -12.33 16 20 N -0.46 -14.26 2.21 -514.86 -1.14 -15.40 16 21 C 0.07 1.44 4.65 86.38 0.40 1.84 16 22 C 0.12 2.46 0.61 -10.80 -0.01 2.46 16 23 C -0.14 -2.99 6.30 71.98 0.45 -2.54 16 24 O -0.56 -16.69 11.43 -148.98 -1.70 -18.40 16 25 C -0.10 -1.30 1.81 -10.80 -0.02 -1.32 16 26 H 0.10 0.85 8.14 -2.39 -0.02 0.83 16 27 C -0.16 -1.92 8.29 71.98 0.60 -1.32 16 28 C -0.12 -1.78 4.97 30.60 0.15 -1.62 16 29 C -0.15 -1.72 9.67 71.98 0.70 -1.02 16 30 H 0.10 1.01 8.14 -2.39 -0.02 0.99 16 31 H 0.06 1.17 3.93 -2.39 -0.01 1.16 16 32 H 0.04 0.89 8.14 -2.39 -0.02 0.87 16 33 H 0.10 1.70 8.14 -2.39 -0.02 1.68 16 34 H 0.11 1.15 6.82 -2.39 -0.02 1.13 16 35 H 0.02 0.66 6.61 -2.39 -0.02 0.65 16 36 H 0.09 3.30 6.37 -2.39 -0.02 3.29 16 37 H 0.08 2.21 5.85 -2.39 -0.01 2.20 16 38 H 0.06 3.40 6.07 -2.39 -0.01 3.39 16 39 H 0.03 1.36 6.52 -2.39 -0.02 1.35 16 40 H 0.05 2.61 5.40 -2.39 -0.01 2.60 16 41 H 0.26 14.94 8.31 -92.71 -0.77 14.17 16 42 H 0.10 1.91 4.44 -2.39 -0.01 1.90 16 43 H 0.14 1.50 6.87 -2.39 -0.02 1.48 16 44 H 0.03 0.81 6.00 -2.38 -0.01 0.80 16 45 H 0.10 1.40 6.60 -2.39 -0.02 1.39 16 46 H 0.07 1.42 6.13 -2.39 -0.01 1.41 16 47 H 0.38 10.50 7.33 -74.06 -0.54 9.95 16 48 H 0.08 0.74 6.56 -2.39 -0.02 0.73 16 49 H 0.07 0.67 6.56 -2.38 -0.02 0.65 16 50 H 0.05 0.74 6.78 -2.38 -0.02 0.73 16 51 H 0.05 0.95 7.83 -2.39 -0.02 0.94 16 52 H 0.06 0.98 6.10 -2.38 -0.01 0.97 16 53 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 54 H 0.06 0.59 8.14 -2.38 -0.02 0.57 16 55 H 0.06 0.65 6.56 -2.39 -0.02 0.63 16 Total: -1.00 -78.79 395.09 3.71 -75.08 By element: Atomic # 1 Polarization: 25.55 SS G_CDS: 0.37 Total: 25.92 kcal Atomic # 6 Polarization: -9.36 SS G_CDS: 8.06 Total: -1.30 kcal Atomic # 7 Polarization: -121.98 SS G_CDS: -5.05 Total: -127.03 kcal Atomic # 8 Polarization: -16.69 SS G_CDS: -1.70 Total: -18.40 kcal Atomic # 14 Polarization: 43.70 SS G_CDS: 2.03 Total: 45.73 kcal Total: -78.79 3.71 -75.08 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001546408218.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.622 kcal (2) G-P(sol) polarization free energy of solvation -78.789 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.833 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.709 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.080 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.542 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds