Wall clock time and date at job start Tue Mar 31 2020 23:01:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42897 * 113.99916 * 2 1 4 4 H 1.09000 * 109.46765 * 30.00105 * 3 2 1 5 5 C 1.50701 * 109.47125 * 270.00109 * 3 2 1 6 6 O 1.21280 * 119.99781 * 354.99670 * 5 3 2 7 7 N 1.34771 * 119.99622 * 175.00346 * 5 3 2 8 8 C 1.46505 * 119.99622 * 179.97438 * 7 5 3 9 9 C 1.52997 * 109.47212 * 179.97438 * 8 7 5 10 10 H 1.08999 * 110.01565 * 305.06387 * 9 8 7 11 11 C 1.53880 * 110.03278 * 66.45010 * 9 8 7 12 12 C 1.54271 * 106.59738 * 119.28587 * 11 9 8 13 13 C 1.54890 * 104.19427 * 23.60943 * 12 11 9 14 14 H 1.09008 * 110.75133 * 80.55867 * 13 12 11 15 15 N 1.46497 * 110.75821 * 203.74021 * 13 12 11 16 16 C 1.36933 * 120.00050 * 273.55278 * 15 13 12 17 17 H 1.07995 * 120.00415 * 359.97438 * 16 15 13 18 18 C 1.38819 * 119.99913 * 179.97438 * 16 15 13 19 19 N 1.31621 * 119.99762 * 359.97438 * 18 16 15 20 20 Si 1.86803 * 119.99876 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.47106 * 359.97438 * 20 18 16 22 22 H 1.48500 * 109.47202 * 119.99889 * 20 18 16 23 23 H 1.48497 * 109.46649 * 239.99562 * 20 18 16 24 24 C 1.54265 * 110.03750 * 183.62099 * 9 8 7 25 25 C 1.53001 * 109.46862 * 149.99705 * 3 2 1 26 26 C 1.53006 * 109.46896 * 60.00632 * 25 3 2 27 27 C 1.53001 * 109.46896 * 180.02562 * 26 25 3 28 28 C 1.53000 * 109.47370 * 59.99212 * 27 26 25 29 29 C 1.52997 * 109.47427 * 300.00033 * 28 27 26 30 30 C 1.52997 * 109.47577 * 300.00148 * 25 3 2 31 31 H 1.09003 * 109.47423 * 299.99650 * 1 2 3 32 32 H 1.08993 * 109.47436 * 59.99979 * 1 2 3 33 33 H 1.09008 * 109.46839 * 180.02562 * 1 2 3 34 34 H 0.96996 * 120.00772 * 359.97438 * 7 5 3 35 35 H 1.09002 * 109.47068 * 299.99729 * 8 7 5 36 36 H 1.09001 * 109.47372 * 59.99816 * 8 7 5 37 37 H 1.08993 * 110.03307 * 238.56968 * 11 9 8 38 38 H 1.09004 * 110.03056 * 359.95416 * 11 9 8 39 39 H 1.08996 * 110.48440 * 142.28773 * 12 11 9 40 40 H 1.08997 * 110.48722 * 264.93304 * 12 11 9 41 41 H 0.97000 * 119.99846 * 93.54762 * 15 13 12 42 42 H 0.97008 * 119.99665 * 180.02562 * 19 18 16 43 43 H 1.09001 * 110.47802 * 335.78404 * 24 9 8 44 44 H 1.08995 * 110.48948 * 98.42034 * 24 9 8 45 45 H 1.09001 * 109.46924 * 180.02562 * 25 3 2 46 46 H 1.09001 * 109.46836 * 299.99444 * 26 25 3 47 47 H 1.08993 * 109.47209 * 59.99216 * 26 25 3 48 48 H 1.09001 * 109.46924 * 299.99390 * 27 26 25 49 49 H 1.09000 * 109.47104 * 179.97438 * 27 26 25 50 50 H 1.08998 * 109.46597 * 179.97438 * 28 27 26 51 51 H 1.09001 * 109.46952 * 60.00195 * 28 27 26 52 52 H 1.09001 * 109.47187 * 300.00018 * 29 28 27 53 53 H 1.09000 * 109.47241 * 179.97438 * 29 28 27 54 54 H 1.09000 * 109.46818 * 300.00084 * 30 25 3 55 55 H 1.09001 * 109.47096 * 59.99980 * 30 25 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3449 1.9993 0.5139 5 6 2.2145 1.7644 -1.4208 6 8 1.9791 1.0105 -2.3413 7 7 2.6589 3.0124 -1.6685 8 6 2.8580 3.4583 -3.0497 9 6 3.3627 4.9027 -3.0516 10 1 2.6785 5.5377 -2.4888 11 6 4.7712 4.9697 -2.4356 12 6 5.7058 5.5213 -3.5320 13 6 4.7609 6.3017 -4.4793 14 1 4.5396 7.2899 -4.0759 15 7 5.3420 6.4086 -5.8199 16 6 6.1996 7.4346 -6.1145 17 1 6.4474 8.1653 -5.3589 18 6 6.7506 7.5356 -7.3847 19 7 6.4491 6.6448 -8.3055 20 14 7.9212 8.9349 -7.7864 21 1 8.0956 9.7939 -6.5878 22 1 9.2366 8.3786 -8.1931 23 1 7.3612 9.7447 -8.8981 24 6 3.4905 5.4160 -4.5007 25 6 3.3589 1.2632 0.7213 26 6 4.2927 0.2892 0.0000 27 6 5.6411 0.2465 0.7217 28 6 5.4332 -0.2197 2.1640 29 6 4.4994 0.7543 2.8853 30 6 3.1515 0.7973 2.1638 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8899 33 1 -0.3633 -1.0278 0.0005 34 1 2.8468 3.6154 -0.9324 35 1 3.5918 2.8161 -3.5367 36 1 1.9124 3.4036 -3.5892 37 1 4.7708 5.6378 -1.5745 38 1 5.0949 3.9733 -2.1346 39 1 6.4491 6.1903 -3.0985 40 1 6.1916 4.7045 -4.0658 41 1 5.1193 5.7525 -6.4987 42 1 6.8344 6.7151 -9.1930 43 1 3.6184 4.5821 -5.1908 44 1 2.6172 6.0081 -4.7741 45 1 3.8020 2.2591 0.7217 46 1 3.8494 -0.7066 0.0000 47 1 4.4404 0.6212 -1.0276 48 1 6.0847 1.2422 0.7221 49 1 6.3063 -0.4477 0.2081 50 1 6.3939 -0.2505 2.6779 51 1 4.9896 -1.2154 2.1636 52 1 4.9429 1.7500 2.8857 53 1 4.3509 0.4219 3.9126 54 1 2.4862 1.4912 2.6776 55 1 2.7081 -0.1985 2.1638 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001565921010.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:01:28 Heat of formation + Delta-G solvation = -130.768428 kcal Electronic energy + Delta-G solvation = -30531.056557 eV Core-core repulsion = 26565.568327 eV Total energy + Delta-G solvation = -3965.488230 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.48023 -39.80518 -39.02840 -37.96949 -36.29660 -35.01753 -33.17719 -32.41110 -31.61210 -30.34349 -28.97408 -28.12614 -27.01036 -25.52376 -24.66905 -23.56266 -22.84519 -21.61030 -20.97366 -20.58642 -20.54015 -19.15464 -18.39110 -17.77821 -17.28505 -16.87065 -16.71196 -16.42665 -15.81588 -15.67533 -15.57551 -15.36692 -15.15469 -14.94969 -14.89427 -14.40658 -14.30610 -14.16356 -13.92693 -13.59959 -13.35007 -13.15262 -13.00134 -12.97732 -12.77933 -12.69393 -12.36387 -12.28630 -12.08613 -11.97973 -11.96821 -11.95100 -11.77585 -11.66326 -11.60071 -11.48352 -11.31663 -11.23620 -11.09110 -10.90519 -10.89181 -10.23367 -10.10214 -8.98145 -7.94238 -5.22378 1.46525 1.47380 1.56807 1.57364 2.07745 2.56361 2.82505 3.38262 3.56819 3.63307 3.69219 3.76484 3.80457 3.85526 3.93523 4.11561 4.29983 4.32379 4.39054 4.40165 4.43204 4.48313 4.52387 4.55570 4.61560 4.63078 4.65362 4.67334 4.69224 4.75887 4.79134 4.80023 4.84539 4.91092 5.04017 5.09141 5.13197 5.19027 5.21015 5.28076 5.31915 5.34348 5.36840 5.40818 5.45188 5.46649 5.50400 5.56459 5.64710 5.64946 6.04207 6.28752 6.58136 7.25296 7.33651 8.12539 8.33772 9.29854 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.016791 B = 0.002174 C = 0.002022 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1667.169129 B =12879.013205 C =13844.525882 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.374 6.374 3 C 0.080 3.920 4 H 0.119 0.881 5 C 0.486 3.514 6 O -0.580 6.580 7 N -0.709 5.709 8 C 0.134 3.866 9 C -0.082 4.082 10 H 0.106 0.894 11 C -0.107 4.107 12 C -0.139 4.139 13 C 0.164 3.836 14 H 0.055 0.945 15 N -0.738 5.738 16 C -0.234 4.234 17 H 0.077 0.923 18 C -0.082 4.082 19 N -0.973 5.973 20 Si 0.972 3.028 21 H -0.263 1.263 22 H -0.296 1.296 23 H -0.294 1.294 24 C -0.117 4.117 25 C -0.072 4.072 26 C -0.109 4.109 27 C -0.118 4.118 28 C -0.119 4.119 29 C -0.116 4.116 30 C -0.105 4.105 31 H 0.070 0.930 32 H 0.028 0.972 33 H 0.095 0.905 34 H 0.417 0.583 35 H 0.044 0.956 36 H 0.057 0.943 37 H 0.090 0.910 38 H 0.066 0.934 39 H 0.051 0.949 40 H 0.035 0.965 41 H 0.370 0.630 42 H 0.249 0.751 43 H 0.050 0.950 44 H 0.070 0.930 45 H 0.105 0.895 46 H 0.052 0.948 47 H 0.033 0.967 48 H 0.068 0.932 49 H 0.052 0.948 50 H 0.067 0.933 51 H 0.054 0.946 52 H 0.071 0.929 53 H 0.072 0.928 54 H 0.082 0.918 55 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.821 -10.883 29.455 33.213 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.292 6.292 3 C 0.019 3.981 4 H 0.136 0.864 5 C 0.273 3.727 6 O -0.459 6.459 7 N -0.364 5.364 8 C 0.010 3.990 9 C -0.101 4.101 10 H 0.125 0.875 11 C -0.145 4.145 12 C -0.179 4.179 13 C 0.056 3.944 14 H 0.073 0.927 15 N -0.377 5.377 16 C -0.366 4.366 17 H 0.095 0.905 18 C -0.274 4.274 19 N -0.624 5.624 20 Si 0.801 3.199 21 H -0.188 1.188 22 H -0.223 1.223 23 H -0.222 1.222 24 C -0.156 4.156 25 C -0.091 4.091 26 C -0.147 4.147 27 C -0.156 4.156 28 C -0.157 4.157 29 C -0.154 4.154 30 C -0.143 4.143 31 H 0.088 0.912 32 H 0.047 0.953 33 H 0.113 0.887 34 H 0.254 0.746 35 H 0.062 0.938 36 H 0.076 0.924 37 H 0.108 0.892 38 H 0.085 0.915 39 H 0.070 0.930 40 H 0.054 0.946 41 H 0.202 0.798 42 H 0.058 0.942 43 H 0.069 0.931 44 H 0.089 0.911 45 H 0.123 0.877 46 H 0.071 0.929 47 H 0.052 0.948 48 H 0.086 0.914 49 H 0.071 0.929 50 H 0.086 0.914 51 H 0.073 0.927 52 H 0.089 0.911 53 H 0.091 0.909 54 H 0.101 0.899 55 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -10.796 -11.428 28.841 32.848 hybrid contribution 0.656 0.570 -1.455 1.695 sum -10.140 -10.858 27.386 31.156 Atomic orbital electron populations 1.22993 0.79784 1.03936 1.00442 1.87976 1.21086 1.25853 1.94239 1.22310 0.98365 0.87072 0.90365 0.86397 1.21997 0.76151 0.81540 0.93044 1.90707 1.52172 1.55074 1.47929 1.45927 1.66990 1.14240 1.09204 1.21299 1.00009 0.94725 0.82953 1.21827 0.97955 0.94248 0.96102 0.87543 1.22140 0.93122 1.01443 0.97756 1.22895 0.98640 0.99037 0.97367 1.21475 0.91672 0.96456 0.84811 0.92702 1.42647 1.53889 1.31301 1.09815 1.19682 1.17741 1.03519 0.95674 0.90466 1.25591 1.03491 1.01717 0.96561 1.69840 1.49839 1.38698 1.04052 0.85084 0.78075 0.78835 0.77873 1.18753 1.22326 1.22164 1.22476 0.97897 0.98797 0.96396 1.21336 0.91016 1.01080 0.95669 1.21438 0.95969 0.99709 0.97541 1.21526 0.96067 1.01720 0.96251 1.21538 1.00029 0.99214 0.94895 1.21518 0.94875 0.99954 0.99026 1.21486 0.97960 1.02186 0.92656 0.91204 0.95314 0.88660 0.74583 0.93782 0.92433 0.89167 0.91549 0.93021 0.94616 0.79826 0.94178 0.93086 0.91097 0.87665 0.92868 0.94776 0.91367 0.92870 0.91433 0.92681 0.91070 0.90900 0.89933 0.92093 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.36 10.81 113.37 1.23 1.58 16 2 O -0.37 -7.45 8.54 -129.99 -1.11 -8.56 16 3 C 0.08 1.26 2.26 29.85 0.07 1.32 16 4 H 0.12 1.04 7.79 -2.39 -0.02 1.02 16 5 C 0.49 11.08 5.87 87.66 0.51 11.59 16 6 O -0.58 -19.62 16.51 15.96 0.26 -19.35 16 7 N -0.71 -12.77 5.26 -463.06 -2.43 -15.20 16 8 C 0.13 3.15 4.70 86.38 0.41 3.55 16 9 C -0.08 -1.79 2.98 -10.07 -0.03 -1.82 16 10 H 0.11 1.73 8.14 -2.39 -0.02 1.71 16 11 C -0.11 -2.37 6.13 31.32 0.19 -2.18 16 12 C -0.14 -4.65 6.51 31.67 0.21 -4.44 16 13 C 0.16 6.26 3.54 46.28 0.16 6.43 16 14 H 0.05 2.07 8.12 -2.38 -0.02 2.05 16 15 N -0.74 -37.57 5.25 -316.85 -1.66 -39.24 16 16 C -0.23 -13.06 9.98 84.04 0.84 -12.22 16 17 H 0.08 4.11 7.83 -2.91 -0.02 4.08 16 18 C -0.08 -4.76 5.50 84.86 0.47 -4.30 16 19 N -0.97 -60.84 13.06 21.65 0.28 -60.55 16 20 Si 0.97 46.58 29.55 68.60 2.03 48.61 16 21 H -0.26 -11.71 7.11 99.48 0.71 -11.00 16 22 H -0.30 -14.25 7.11 99.48 0.71 -13.55 16 23 H -0.29 -14.11 7.11 99.48 0.71 -13.40 16 24 C -0.12 -3.60 5.96 31.67 0.19 -3.41 16 25 C -0.07 -0.93 2.04 -10.79 -0.02 -0.96 16 26 C -0.11 -2.05 4.81 30.60 0.15 -1.91 16 27 C -0.12 -1.83 5.92 30.59 0.18 -1.65 16 28 C -0.12 -1.45 5.92 30.59 0.18 -1.27 16 29 C -0.12 -1.06 5.92 30.58 0.18 -0.88 16 30 C -0.11 -1.03 5.05 30.58 0.15 -0.88 16 31 H 0.07 0.60 8.09 -2.39 -0.02 0.58 16 32 H 0.03 0.50 8.14 -2.39 -0.02 0.48 16 33 H 0.09 1.21 8.14 -2.38 -0.02 1.19 16 34 H 0.42 4.41 8.09 -92.71 -0.75 3.66 16 35 H 0.04 1.28 8.14 -2.39 -0.02 1.26 16 36 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 37 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 38 H 0.07 1.42 7.58 -2.38 -0.02 1.40 16 39 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 40 H 0.03 1.38 8.14 -2.39 -0.02 1.36 16 41 H 0.37 20.56 7.72 -92.71 -0.72 19.85 16 42 H 0.25 15.12 8.31 -92.70 -0.77 14.35 16 43 H 0.05 1.77 7.73 -2.39 -0.02 1.75 16 44 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 45 H 0.11 0.96 7.93 -2.39 -0.02 0.94 16 46 H 0.05 1.20 7.68 -2.39 -0.02 1.18 16 47 H 0.03 0.82 7.22 -2.39 -0.02 0.80 16 48 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 49 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 50 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 51 H 0.05 0.74 8.14 -2.39 -0.02 0.73 16 52 H 0.07 0.56 8.14 -2.39 -0.02 0.54 16 53 H 0.07 0.54 8.14 -2.39 -0.02 0.52 16 54 H 0.08 0.49 8.14 -2.39 -0.02 0.47 16 55 H 0.06 0.78 7.68 -2.39 -0.02 0.76 16 Total: -1.00 -75.53 425.43 1.81 -73.71 By element: Atomic # 1 Polarization: 32.62 SS G_CDS: -0.62 Total: 32.01 kcal Atomic # 6 Polarization: -16.48 SS G_CDS: 5.06 Total: -11.42 kcal Atomic # 7 Polarization: -111.18 SS G_CDS: -3.82 Total: -114.99 kcal Atomic # 8 Polarization: -27.07 SS G_CDS: -0.85 Total: -27.92 kcal Atomic # 14 Polarization: 46.58 SS G_CDS: 2.03 Total: 48.61 kcal Total: -75.53 1.81 -73.71 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001565921010.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.054 kcal (2) G-P(sol) polarization free energy of solvation -75.527 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.581 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.813 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.714 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.768 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds