Wall clock time and date at job start Tue Mar 31 2020 23:01:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42898 * 113.99582 * 2 1 4 4 H 1.08996 * 109.47292 * 9.78418 * 3 2 1 5 5 C 1.50703 * 109.46991 * 129.78371 * 3 2 1 6 6 O 1.21281 * 120.00095 * 3.82138 * 5 3 2 7 7 N 1.34776 * 120.00146 * 183.82761 * 5 3 2 8 8 C 1.46503 * 120.00234 * 174.64743 * 7 5 3 9 9 C 1.52991 * 109.47281 * 180.02562 * 8 7 5 10 10 H 1.09006 * 110.81922 * 303.11761 * 9 8 7 11 11 C 1.54892 * 110.75893 * 66.45549 * 9 8 7 12 12 C 1.54261 * 104.31310 * 156.32754 * 11 9 8 13 13 C 1.53881 * 106.59926 * 336.31977 * 12 11 9 14 14 H 1.09002 * 110.03000 * 119.33722 * 13 12 11 15 15 N 1.46503 * 110.03387 * 240.72066 * 13 12 11 16 16 C 1.36935 * 119.99906 * 273.54804 * 15 13 12 17 17 H 1.08000 * 119.99990 * 0.02562 * 16 15 13 18 18 C 1.38809 * 119.99988 * 180.02562 * 16 15 13 19 19 N 1.31617 * 120.00110 * 359.97438 * 18 16 15 20 20 Si 1.86802 * 119.99903 * 180.02562 * 18 16 15 21 21 H 1.48499 * 109.47347 * 89.99847 * 20 18 16 22 22 H 1.48499 * 109.46935 * 209.99904 * 20 18 16 23 23 H 1.48501 * 109.47257 * 329.99661 * 20 18 16 24 24 C 1.54263 * 106.59605 * 0.02562 * 13 12 11 25 25 C 1.52996 * 109.47242 * 249.78092 * 3 2 1 26 26 C 1.52998 * 109.47100 * 61.69069 * 25 3 2 27 27 C 1.53005 * 109.47074 * 179.97438 * 26 25 3 28 28 C 1.53001 * 109.46863 * 60.00583 * 27 26 25 29 29 C 1.53007 * 109.46907 * 299.99502 * 28 27 26 30 30 C 1.52996 * 109.46979 * 60.00379 * 29 28 27 31 31 H 1.08998 * 109.47344 * 64.70779 * 1 2 3 32 32 H 1.08999 * 109.46862 * 184.70109 * 1 2 3 33 33 H 1.08998 * 109.47489 * 304.69678 * 1 2 3 34 34 H 0.96996 * 120.00036 * 354.65351 * 7 5 3 35 35 H 1.09002 * 109.46881 * 59.99742 * 8 7 5 36 36 H 1.09003 * 109.46906 * 300.00652 * 8 7 5 37 37 H 1.08991 * 110.48629 * 37.57716 * 11 9 8 38 38 H 1.08998 * 110.48268 * 275.06933 * 11 9 8 39 39 H 1.09002 * 110.03738 * 95.61024 * 12 11 9 40 40 H 1.09006 * 110.03134 * 217.04079 * 12 11 9 41 41 H 0.97000 * 119.99830 * 93.54078 * 15 13 12 42 42 H 0.97001 * 120.00195 * 180.02562 * 19 18 16 43 43 H 1.08997 * 110.48590 * 142.29269 * 24 13 12 44 44 H 1.09000 * 110.48280 * 264.92650 * 24 13 12 45 45 H 1.08998 * 109.47354 * 181.69783 * 25 3 2 46 46 H 1.08995 * 109.47143 * 300.00367 * 26 25 3 47 47 H 1.08997 * 109.46900 * 60.00454 * 26 25 3 48 48 H 1.09001 * 109.47211 * 300.00089 * 27 26 25 49 49 H 1.09003 * 109.47012 * 180.02562 * 27 26 25 50 50 H 1.09002 * 109.46727 * 180.02562 * 28 27 26 51 51 H 1.08995 * 109.47276 * 59.99507 * 28 27 26 52 52 H 1.08995 * 109.47157 * 300.00078 * 29 28 27 53 53 H 1.08997 * 109.47008 * 179.97438 * 29 28 27 54 54 H 1.08994 * 109.47208 * 179.97438 * 30 29 28 55 55 H 1.08998 * 109.47354 * 59.99343 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 1 1.2327 2.0492 0.1746 5 6 3.0450 1.3946 1.0919 6 8 3.3130 0.4151 1.7549 7 7 3.6727 2.5629 1.3317 8 6 4.5914 2.6814 2.4667 9 6 5.1642 4.0993 2.5133 10 1 5.6603 4.3479 1.5751 11 6 4.0538 5.1296 2.8368 12 6 4.8116 6.3307 3.4390 13 6 6.1368 5.7805 3.9950 14 1 6.9788 6.2559 3.4919 15 7 6.2139 6.0209 5.4381 16 6 6.7026 7.2103 5.9088 17 1 7.0308 7.9713 5.2162 18 6 6.7763 7.4380 7.2761 19 7 6.3759 6.5108 8.1201 20 14 7.4423 9.0608 7.9182 21 1 6.3265 10.0292 8.0683 22 1 8.0896 8.8431 9.2369 23 1 8.4403 9.6002 6.9600 24 6 6.1381 4.2643 3.7106 25 6 2.6730 1.5687 -1.3536 26 6 1.6149 1.5198 -2.4576 27 6 2.2777 1.7836 -3.8112 28 6 3.3404 0.7151 -4.0756 29 6 4.3985 0.7640 -2.9715 30 6 3.7357 0.5002 -1.6180 31 1 -0.3634 0.4390 -0.9291 32 1 -0.3633 -1.0242 0.0842 33 1 -0.3634 0.5850 0.8449 34 1 3.5161 3.3254 0.7529 35 1 5.4044 1.9643 2.3524 36 1 4.0537 2.4765 3.3924 37 1 3.3518 4.7188 3.5623 38 1 3.5312 5.4254 1.9271 39 1 5.0106 7.0726 2.6655 40 1 4.2260 6.7767 4.2429 41 1 5.9188 5.3376 6.0600 42 1 6.4270 6.6700 9.0756 43 1 7.1385 3.9282 3.4379 44 1 5.7727 3.7133 4.5773 45 1 3.1422 2.5524 -1.3432 46 1 1.1458 0.5360 -2.4680 47 1 0.8581 2.2813 -2.2695 48 1 2.7466 2.7676 -3.8006 49 1 1.5238 1.7493 -4.5978 50 1 3.8128 0.9033 -5.0397 51 1 2.8715 -0.2688 -4.0862 52 1 4.8673 1.7479 -2.9609 53 1 5.1553 0.0024 -3.1596 54 1 4.4895 0.5345 -0.8315 55 1 3.2668 -0.4837 -1.6286 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001565921011.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:01:32 Heat of formation + Delta-G solvation = -128.423117 kcal Electronic energy + Delta-G solvation = -30316.569288 eV Core-core repulsion = 26351.182758 eV Total energy + Delta-G solvation = -3965.386530 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.44459 -39.80818 -39.07191 -37.92520 -36.28987 -34.99694 -33.11995 -32.35409 -31.62527 -30.34310 -28.98709 -28.31549 -26.84039 -25.50586 -24.68607 -23.52087 -22.85202 -21.59140 -20.93369 -20.68552 -20.52527 -19.13433 -18.32408 -17.79602 -17.19947 -16.96433 -16.62337 -16.32791 -15.86560 -15.77719 -15.63417 -15.30324 -15.11607 -14.99795 -14.87651 -14.49227 -14.30368 -14.07171 -13.99061 -13.52222 -13.22508 -13.15290 -13.03048 -13.01054 -12.74693 -12.59314 -12.44852 -12.37309 -12.13799 -11.98962 -11.92858 -11.86143 -11.70438 -11.62983 -11.55937 -11.44015 -11.28636 -11.21808 -11.17992 -10.90760 -10.82202 -10.26548 -10.06680 -8.97164 -7.93241 -5.21098 1.46601 1.48271 1.56643 1.58400 1.95439 2.56914 2.98539 3.38887 3.57442 3.62595 3.68664 3.76230 3.82468 3.85246 3.96646 4.08281 4.25202 4.33588 4.38667 4.40344 4.42557 4.51873 4.54143 4.57635 4.60915 4.62137 4.68190 4.68852 4.70244 4.76328 4.79682 4.80925 4.86155 4.92986 5.04005 5.08252 5.12694 5.18764 5.25035 5.26776 5.31914 5.33637 5.39221 5.41014 5.45120 5.46806 5.52513 5.55967 5.63058 5.69223 6.08880 6.30077 6.59028 7.25722 7.34620 8.14430 8.35271 9.30514 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.021003 B = 0.001972 C = 0.001902 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1332.815338 B =14197.314782 C =14715.913879 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.382 6.382 3 C 0.079 3.921 4 H 0.116 0.884 5 C 0.502 3.498 6 O -0.577 6.577 7 N -0.709 5.709 8 C 0.136 3.864 9 C -0.083 4.083 10 H 0.108 0.892 11 C -0.105 4.105 12 C -0.139 4.139 13 C 0.163 3.837 14 H 0.046 0.954 15 N -0.738 5.738 16 C -0.235 4.235 17 H 0.076 0.924 18 C -0.082 4.082 19 N -0.972 5.972 20 Si 0.972 3.028 21 H -0.288 1.288 22 H -0.298 1.298 23 H -0.268 1.268 24 C -0.115 4.115 25 C -0.088 4.088 26 C -0.110 4.110 27 C -0.116 4.116 28 C -0.120 4.120 29 C -0.117 4.117 30 C -0.107 4.107 31 H 0.067 0.933 32 H 0.091 0.909 33 H 0.045 0.955 34 H 0.416 0.584 35 H 0.059 0.941 36 H 0.048 0.952 37 H 0.050 0.950 38 H 0.092 0.908 39 H 0.067 0.933 40 H 0.037 0.963 41 H 0.370 0.630 42 H 0.249 0.751 43 H 0.071 0.929 44 H 0.051 0.949 45 H 0.101 0.899 46 H 0.061 0.939 47 H 0.080 0.920 48 H 0.070 0.930 49 H 0.071 0.929 50 H 0.068 0.932 51 H 0.054 0.946 52 H 0.069 0.931 53 H 0.055 0.945 54 H 0.036 0.964 55 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.699 -9.703 -29.534 33.581 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.299 6.299 3 C 0.017 3.983 4 H 0.134 0.866 5 C 0.288 3.712 6 O -0.456 6.456 7 N -0.364 5.364 8 C 0.012 3.988 9 C -0.102 4.102 10 H 0.126 0.874 11 C -0.142 4.142 12 C -0.180 4.180 13 C 0.055 3.945 14 H 0.064 0.936 15 N -0.377 5.377 16 C -0.367 4.367 17 H 0.094 0.906 18 C -0.274 4.274 19 N -0.624 5.624 20 Si 0.801 3.199 21 H -0.215 1.215 22 H -0.225 1.225 23 H -0.193 1.193 24 C -0.154 4.154 25 C -0.107 4.107 26 C -0.148 4.148 27 C -0.153 4.153 28 C -0.157 4.157 29 C -0.154 4.154 30 C -0.145 4.145 31 H 0.085 0.915 32 H 0.110 0.890 33 H 0.064 0.936 34 H 0.254 0.746 35 H 0.077 0.923 36 H 0.067 0.933 37 H 0.069 0.931 38 H 0.110 0.890 39 H 0.085 0.915 40 H 0.056 0.944 41 H 0.202 0.798 42 H 0.058 0.942 43 H 0.089 0.911 44 H 0.070 0.930 45 H 0.119 0.881 46 H 0.080 0.920 47 H 0.099 0.901 48 H 0.089 0.911 49 H 0.090 0.910 50 H 0.086 0.914 51 H 0.073 0.927 52 H 0.087 0.913 53 H 0.074 0.926 54 H 0.055 0.945 55 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -12.320 -10.395 -29.058 33.230 hybrid contribution 0.202 0.821 1.400 1.636 sum -12.118 -9.574 -27.658 31.678 Atomic orbital electron populations 1.23141 0.79286 1.03875 1.01279 1.87999 1.21316 1.25983 1.94648 1.22211 0.95118 0.87614 0.93334 0.86632 1.21359 0.82545 0.82605 0.84671 1.90705 1.65573 1.37671 1.51615 1.45821 1.45535 1.13671 1.31325 1.21187 0.92282 0.96832 0.88452 1.22243 0.96104 0.92523 0.99328 0.87393 1.22322 0.96676 0.94482 1.00738 1.22791 0.97649 0.98216 0.99299 1.21147 0.95620 0.94041 0.83717 0.93626 1.42781 1.76047 1.16864 1.02055 1.19646 1.32237 0.94012 0.90799 0.90600 1.25573 1.03764 1.01513 0.96504 1.69827 1.55619 1.35474 1.01442 0.85156 0.77938 0.79516 0.77285 1.21508 1.22491 1.19299 1.22574 0.99530 0.95741 0.97574 1.21568 0.96776 1.00274 0.92070 1.21579 0.97026 1.02505 0.93672 1.21514 0.98067 0.99094 0.96635 1.21541 0.96621 0.99385 0.98161 1.21521 0.97881 1.01948 0.94064 1.21412 0.97046 0.98995 0.97059 0.91468 0.89006 0.93584 0.74636 0.92308 0.93341 0.93141 0.88989 0.91454 0.94387 0.79826 0.94207 0.91071 0.93005 0.88056 0.92004 0.90146 0.91112 0.91008 0.91366 0.92702 0.91271 0.92581 0.94476 0.92873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.26 10.42 113.37 1.18 1.44 16 2 O -0.38 -7.79 8.62 -129.97 -1.12 -8.91 16 3 C 0.08 1.27 2.38 29.85 0.07 1.34 16 4 H 0.12 1.20 7.59 -2.39 -0.02 1.18 16 5 C 0.50 11.80 6.00 87.66 0.53 12.32 16 6 O -0.58 -20.04 16.51 15.98 0.26 -19.77 16 7 N -0.71 -13.08 5.34 -463.06 -2.47 -15.55 16 8 C 0.14 3.19 5.13 86.38 0.44 3.64 16 9 C -0.08 -1.84 2.98 -9.39 -0.03 -1.86 16 10 H 0.11 1.87 8.14 -2.38 -0.02 1.85 16 11 C -0.10 -2.45 5.96 31.67 0.19 -2.27 16 12 C -0.14 -4.49 6.59 31.32 0.21 -4.28 16 13 C 0.16 6.18 3.55 45.72 0.16 6.34 16 14 H 0.05 1.75 8.10 -2.39 -0.02 1.73 16 15 N -0.74 -37.30 5.04 -319.50 -1.61 -38.91 16 16 C -0.23 -13.07 9.96 84.03 0.84 -12.23 16 17 H 0.08 4.03 7.83 -2.91 -0.02 4.01 16 18 C -0.08 -4.75 5.50 84.86 0.47 -4.28 16 19 N -0.97 -60.56 13.06 21.65 0.28 -60.27 16 20 Si 0.97 46.52 29.55 68.60 2.03 48.55 16 21 H -0.29 -13.53 7.11 99.48 0.71 -12.82 16 22 H -0.30 -14.46 7.11 99.48 0.71 -13.75 16 23 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 24 C -0.12 -3.57 5.99 31.78 0.19 -3.38 16 25 C -0.09 -1.06 2.00 -10.79 -0.02 -1.08 16 26 C -0.11 -0.96 4.51 30.60 0.14 -0.82 16 27 C -0.12 -0.90 5.92 30.60 0.18 -0.72 16 28 C -0.12 -1.22 5.92 30.60 0.18 -1.04 16 29 C -0.12 -1.50 5.92 30.60 0.18 -1.32 16 30 C -0.11 -1.81 4.82 30.59 0.15 -1.66 16 31 H 0.07 0.53 6.99 -2.39 -0.02 0.51 16 32 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 33 H 0.05 0.55 8.08 -2.39 -0.02 0.53 16 34 H 0.42 4.67 7.83 -92.71 -0.73 3.94 16 35 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 36 H 0.05 1.36 8.10 -2.39 -0.02 1.34 16 37 H 0.05 1.34 8.01 -2.39 -0.02 1.32 16 38 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 39 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 40 H 0.04 1.49 7.92 -2.38 -0.02 1.47 16 41 H 0.37 20.39 7.54 -92.71 -0.70 19.69 16 42 H 0.25 15.09 8.31 -92.71 -0.77 14.32 16 43 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 44 H 0.05 1.82 7.64 -2.39 -0.02 1.80 16 45 H 0.10 0.84 7.64 -2.39 -0.02 0.82 16 46 H 0.06 0.67 6.88 -2.39 -0.02 0.65 16 47 H 0.08 0.43 8.14 -2.39 -0.02 0.41 16 48 H 0.07 0.47 8.14 -2.39 -0.02 0.45 16 49 H 0.07 0.45 8.14 -2.39 -0.02 0.43 16 50 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 51 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 52 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 53 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 54 H 0.04 0.79 7.27 -2.39 -0.02 0.78 16 55 H 0.05 1.10 7.64 -2.39 -0.02 1.08 16 Total: -1.00 -75.53 422.20 1.85 -73.68 By element: Atomic # 1 Polarization: 31.62 SS G_CDS: -0.57 Total: 31.05 kcal Atomic # 6 Polarization: -14.91 SS G_CDS: 5.05 Total: -9.86 kcal Atomic # 7 Polarization: -110.94 SS G_CDS: -3.80 Total: -114.74 kcal Atomic # 8 Polarization: -27.82 SS G_CDS: -0.86 Total: -28.68 kcal Atomic # 14 Polarization: 46.52 SS G_CDS: 2.03 Total: 48.55 kcal Total: -75.53 1.85 -73.68 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001565921011.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.741 kcal (2) G-P(sol) polarization free energy of solvation -75.534 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.276 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.853 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.682 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.423 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds