Wall clock time and date at job start Tue Mar 31 2020 22:17:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46506 * 120.00098 * 2 1 4 4 C 1.53002 * 109.47035 * 270.00050 * 3 2 1 5 5 C 1.52996 * 109.46969 * 179.97438 * 4 3 2 6 6 C 1.53002 * 109.46972 * 179.97438 * 5 4 3 7 7 C 1.52996 * 109.47346 * 180.02562 * 6 5 4 8 8 C 1.53002 * 109.47343 * 180.02562 * 7 6 5 9 9 N 1.46496 * 109.47030 * 180.02562 * 8 7 6 10 10 C 1.36943 * 119.99943 * 180.02562 * 9 8 7 11 11 H 1.07999 * 119.99965 * 359.97438 * 10 9 8 12 12 C 1.38815 * 119.99767 * 179.97438 * 10 9 8 13 13 N 1.31619 * 119.99480 * 179.97438 * 12 10 9 14 14 Si 1.86789 * 120.00218 * 0.02562 * 12 10 9 15 15 H 1.48503 * 109.47675 * 89.99912 * 14 12 10 16 16 H 1.48498 * 109.47248 * 209.99692 * 14 12 10 17 17 H 1.48501 * 109.47162 * 329.99739 * 14 12 10 18 18 C 1.34771 * 120.00308 * 179.97438 * 2 1 3 19 19 O 1.21281 * 120.00246 * 180.02562 * 18 2 1 20 20 C 1.50706 * 120.00094 * 359.97438 * 18 2 1 21 21 H 1.09000 * 110.38462 * 302.59779 * 20 18 2 22 22 O 1.44626 * 110.43849 * 180.02562 * 20 18 2 23 23 C 1.44628 * 104.50838 * 198.49974 * 22 20 18 24 24 C 1.54560 * 104.47485 * 42.74944 * 23 22 20 25 25 H 1.09000 * 112.78496 * 212.75721 * 24 23 22 26 26 C 1.54133 * 108.75975 * 87.53892 * 24 23 22 27 27 C 1.54824 * 104.37158 * 225.08342 * 26 24 23 28 28 C 1.54833 * 102.72837 * 38.27197 * 27 26 24 29 29 C 1.54129 * 104.37203 * 321.72397 * 28 27 26 30 30 H 1.09003 * 112.70449 * 260.17248 * 29 28 27 31 31 H 1.08999 * 109.46532 * 90.00087 * 1 2 3 32 32 H 1.09000 * 109.46877 * 210.00112 * 1 2 3 33 33 H 1.09000 * 109.47251 * 330.00217 * 1 2 3 34 34 H 1.09004 * 109.47073 * 29.99732 * 3 2 1 35 35 H 1.09000 * 109.47212 * 149.99814 * 3 2 1 36 36 H 1.09004 * 109.46930 * 299.99770 * 4 3 2 37 37 H 1.09004 * 109.47059 * 59.99372 * 4 3 2 38 38 H 1.08992 * 109.47534 * 299.99582 * 5 4 3 39 39 H 1.08996 * 109.47134 * 60.00388 * 5 4 3 40 40 H 1.08996 * 109.47407 * 300.00487 * 6 5 4 41 41 H 1.09000 * 109.46986 * 60.00258 * 6 5 4 42 42 H 1.09004 * 109.47108 * 300.00289 * 7 6 5 43 43 H 1.09000 * 109.46870 * 60.00183 * 7 6 5 44 44 H 1.09000 * 109.46497 * 299.99836 * 8 7 6 45 45 H 1.09000 * 109.47312 * 60.00057 * 8 7 6 46 46 H 0.96999 * 120.00085 * 359.97438 * 9 8 7 47 47 H 0.97000 * 120.00111 * 179.97438 * 13 12 10 48 48 H 1.08996 * 110.43591 * 284.00212 * 23 22 20 49 49 H 1.09005 * 110.43295 * 161.49957 * 23 22 20 50 50 H 1.08996 * 110.45152 * 343.80270 * 26 24 23 51 51 H 1.08992 * 110.45612 * 106.23238 * 26 24 23 52 52 H 1.08996 * 110.76475 * 156.58050 * 27 26 24 53 53 H 1.09006 * 110.76157 * 279.77999 * 27 26 24 54 54 H 1.09010 * 110.45071 * 203.00344 * 28 27 26 55 55 H 1.08996 * 110.45447 * 80.44976 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2688 0.0000 4 6 2.4526 1.7104 -1.4425 5 6 3.2170 3.0357 -1.4425 6 6 3.4725 3.4771 -2.8850 7 6 4.2376 4.8020 -2.8851 8 6 4.4925 5.2437 -4.3276 9 7 5.2256 6.5121 -4.3276 10 6 5.5676 7.1052 -5.5136 11 1 5.2972 6.6378 -6.4489 12 6 6.2617 8.3074 -5.5136 13 7 6.5908 8.8772 -6.6535 14 14 6.7299 9.1155 -3.8959 15 1 8.0664 8.6296 -3.4683 16 1 6.7724 10.5893 -4.0729 17 1 5.7231 8.7702 -2.8604 18 6 2.1389 -1.1671 0.0005 19 8 3.3517 -1.1671 0.0010 20 6 1.3855 -2.4723 0.0017 21 1 0.7193 -2.5254 0.8628 22 8 2.3067 -3.5872 0.0027 23 6 1.5139 -4.7127 -0.4406 24 6 0.6717 -4.1551 -1.6105 25 1 -0.3108 -4.6215 -1.6832 26 6 1.4817 -4.2934 -2.9144 27 6 1.3037 -2.9289 -3.6240 28 6 1.3461 -1.9241 -2.4467 29 6 0.5845 -2.6341 -1.3102 30 1 -0.4444 -2.2878 -1.2128 31 1 -0.3632 0.0000 -1.0277 32 1 -0.3633 -0.8900 0.5139 33 1 -0.3634 0.8900 0.5138 34 1 1.6084 2.0285 0.5138 35 1 3.1500 1.1384 0.5139 36 1 3.0417 0.9507 -1.9563 37 1 1.5001 1.8407 -1.9564 38 1 2.6276 3.7952 -0.9289 39 1 4.1694 2.9058 -0.9286 40 1 4.0621 2.7175 -3.3984 41 1 2.5203 3.6069 -3.3993 42 1 3.6483 5.5618 -2.3716 43 1 5.1898 4.6718 -2.3709 44 1 5.0816 4.4840 -4.8414 45 1 3.5401 5.3741 -4.8415 46 1 5.4681 6.9321 -3.4876 47 1 7.0755 9.7174 -6.6535 48 1 0.8652 -5.0613 0.3630 49 1 2.1593 -5.5199 -0.7871 50 1 2.5336 -4.4727 -2.6922 51 1 1.0803 -5.0994 -3.5286 52 1 2.1232 -2.7447 -4.3186 53 1 0.3445 -2.8838 -4.1398 54 1 0.8439 -0.9959 -2.7199 55 1 2.3764 -1.7279 -2.1502 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001566004246.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:17:21 Heat of formation + Delta-G solvation = -109.823097 kcal Electronic energy + Delta-G solvation = -29896.697290 eV Core-core repulsion = 25932.117317 eV Total energy + Delta-G solvation = -3964.579972 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -42.12930 -40.04601 -37.97494 -37.14640 -36.59462 -35.80716 -33.94404 -32.59910 -31.51362 -30.54259 -28.85320 -27.80575 -27.00439 -25.70939 -24.35696 -23.45438 -22.43369 -22.00182 -21.76556 -20.84826 -20.05590 -19.62522 -18.11948 -17.91294 -17.26711 -16.83433 -16.69304 -16.60757 -15.91517 -15.82680 -15.66382 -15.51270 -15.33508 -15.23017 -14.91605 -14.77006 -14.15794 -14.04188 -13.90141 -13.62345 -13.47249 -13.40838 -13.15529 -12.93252 -12.59990 -12.58036 -12.46610 -12.40475 -12.17285 -12.12142 -12.03800 -11.90061 -11.88600 -11.79453 -11.75304 -11.70333 -11.57538 -11.54350 -11.36911 -10.99707 -10.89879 -10.54091 -9.68953 -9.33494 -8.06026 -5.40296 1.35798 1.40318 1.47785 1.51829 1.80371 2.46320 2.99542 3.18630 3.24796 3.37596 3.54551 3.63136 3.79031 3.94925 3.97618 4.05193 4.12841 4.17679 4.20031 4.28740 4.33887 4.34453 4.38270 4.47440 4.52445 4.52783 4.61048 4.62196 4.64999 4.71509 4.73120 4.81414 4.83604 4.86248 4.88401 4.94389 4.97652 4.99742 5.00975 5.12288 5.13726 5.20425 5.20840 5.24878 5.32281 5.42795 5.48166 5.49510 5.55167 5.71679 5.75243 6.18346 6.33461 7.04479 7.12987 7.80736 8.01183 9.15513 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.020350 B = 0.001732 C = 0.001662 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1375.559003 B =16164.338734 C =16846.889845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.063 3.937 2 N -0.608 5.608 3 C 0.115 3.885 4 C -0.121 4.121 5 C -0.109 4.109 6 C -0.106 4.106 7 C -0.118 4.118 8 C 0.150 3.850 9 N -0.762 5.762 10 C -0.243 4.243 11 H 0.053 0.947 12 C -0.067 4.067 13 N -0.983 5.983 14 Si 0.961 3.039 15 H -0.278 1.278 16 H -0.291 1.291 17 H -0.250 1.250 18 C 0.517 3.483 19 O -0.581 6.581 20 C 0.057 3.943 21 H 0.119 0.881 22 O -0.384 6.384 23 C 0.037 3.963 24 C -0.115 4.115 25 H 0.129 0.871 26 C -0.120 4.120 27 C -0.123 4.123 28 C -0.124 4.124 29 C -0.103 4.103 30 H 0.137 0.863 31 H 0.073 0.927 32 H 0.090 0.910 33 H 0.094 0.906 34 H 0.109 0.891 35 H 0.056 0.944 36 H 0.037 0.963 37 H 0.079 0.921 38 H 0.081 0.919 39 H 0.054 0.946 40 H 0.051 0.949 41 H 0.070 0.930 42 H 0.070 0.930 43 H 0.059 0.941 44 H 0.016 0.984 45 H 0.024 0.976 46 H 0.367 0.633 47 H 0.259 0.741 48 H 0.084 0.916 49 H 0.096 0.904 50 H 0.047 0.953 51 H 0.085 0.915 52 H 0.052 0.948 53 H 0.088 0.912 54 H 0.075 0.925 55 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.304 -31.009 19.169 43.814 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 N -0.341 5.341 3 C -0.007 4.007 4 C -0.160 4.160 5 C -0.148 4.148 6 C -0.145 4.145 7 C -0.156 4.156 8 C 0.024 3.976 9 N -0.407 5.407 10 C -0.374 4.374 11 H 0.071 0.929 12 C -0.258 4.258 13 N -0.634 5.634 14 Si 0.788 3.212 15 H -0.204 1.204 16 H -0.218 1.218 17 H -0.174 1.174 18 C 0.305 3.695 19 O -0.460 6.460 20 C -0.004 4.004 21 H 0.137 0.863 22 O -0.303 6.303 23 C -0.039 4.039 24 C -0.133 4.133 25 H 0.147 0.853 26 C -0.158 4.158 27 C -0.160 4.160 28 C -0.162 4.162 29 C -0.122 4.122 30 H 0.155 0.845 31 H 0.091 0.909 32 H 0.109 0.891 33 H 0.112 0.888 34 H 0.127 0.873 35 H 0.075 0.925 36 H 0.056 0.944 37 H 0.097 0.903 38 H 0.099 0.901 39 H 0.073 0.927 40 H 0.070 0.930 41 H 0.089 0.911 42 H 0.088 0.912 43 H 0.078 0.922 44 H 0.034 0.966 45 H 0.042 0.958 46 H 0.200 0.800 47 H 0.068 0.932 48 H 0.103 0.897 49 H 0.114 0.886 50 H 0.066 0.934 51 H 0.103 0.897 52 H 0.070 0.930 53 H 0.106 0.894 54 H 0.094 0.906 55 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -23.448 -31.014 19.017 43.282 hybrid contribution 1.096 0.844 0.127 1.389 sum -22.352 -30.170 19.144 42.147 Atomic orbital electron populations 1.22292 0.76653 1.05259 1.03642 1.47864 1.08698 1.04839 1.72666 1.21575 0.97473 0.84592 0.97090 1.21807 1.00808 0.96509 0.96878 1.21449 1.00396 0.96745 0.96165 1.21419 1.00203 0.95308 0.97533 1.21678 1.00726 0.98097 0.95058 1.20851 0.93967 0.85951 0.96824 1.42774 1.69090 1.24981 1.03905 1.19084 1.28863 1.03016 0.86419 0.92868 1.25607 1.01038 0.98500 1.00677 1.69897 1.46378 1.20317 1.26774 0.85317 0.78808 0.77283 0.79836 1.20409 1.21769 1.17427 1.20649 0.87457 0.86228 0.75125 1.90720 1.16422 1.87823 1.51041 1.23173 0.90705 0.85376 1.01114 0.86328 1.89397 1.33966 1.18469 1.88441 1.23862 0.94535 0.89061 0.96412 1.23292 1.00733 0.94373 0.94946 0.85334 1.22430 0.99376 0.97903 0.96073 1.22484 1.02261 0.94454 0.96843 1.22456 0.98985 0.99043 0.95674 1.23327 1.00514 0.96394 0.91933 0.84509 0.90881 0.89144 0.88783 0.87324 0.92495 0.94440 0.90279 0.90067 0.92735 0.92988 0.91097 0.91174 0.92220 0.96573 0.95807 0.80003 0.93204 0.89747 0.88627 0.93439 0.89684 0.92951 0.89390 0.90612 0.94642 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.26 9.06 127.77 1.16 1.41 16 2 N -0.61 -8.56 2.81 -846.73 -2.38 -10.94 16 3 C 0.12 1.82 5.45 86.38 0.47 2.29 16 4 C -0.12 -2.14 5.54 30.59 0.17 -1.97 16 5 C -0.11 -2.11 5.21 30.59 0.16 -1.95 16 6 C -0.11 -2.55 5.21 30.59 0.16 -2.39 16 7 C -0.12 -3.54 5.33 30.59 0.16 -3.37 16 8 C 0.15 6.07 6.26 86.38 0.54 6.61 16 9 N -0.76 -37.89 5.41 -343.45 -1.86 -39.75 16 10 C -0.24 -14.65 10.47 84.03 0.88 -13.77 16 11 H 0.05 3.51 8.06 -2.91 -0.02 3.48 16 12 C -0.07 -4.09 5.50 84.86 0.47 -3.62 16 13 N -0.98 -64.84 13.97 21.65 0.30 -64.54 16 14 Si 0.96 46.78 27.74 68.60 1.90 48.69 16 15 H -0.28 -13.22 7.11 99.48 0.71 -12.51 16 16 H -0.29 -14.13 7.11 99.48 0.71 -13.43 16 17 H -0.25 -10.92 6.52 99.48 0.65 -10.27 16 18 C 0.52 10.96 4.90 87.66 0.43 11.39 16 19 O -0.58 -19.25 15.82 15.28 0.24 -19.01 16 20 C 0.06 0.83 2.55 30.38 0.08 0.90 16 21 H 0.12 0.97 7.30 -2.39 -0.02 0.95 16 22 O -0.38 -8.09 10.96 -130.67 -1.43 -9.53 16 23 C 0.04 0.41 6.85 72.51 0.50 0.91 16 24 C -0.12 -0.87 4.04 -9.10 -0.04 -0.90 16 25 H 0.13 0.20 8.14 -2.39 -0.02 0.18 16 26 C -0.12 -1.34 6.26 31.60 0.20 -1.14 16 27 C -0.12 -1.55 6.90 31.84 0.22 -1.33 16 28 C -0.12 -1.80 5.47 31.60 0.17 -1.63 16 29 C -0.10 -0.90 2.82 -9.10 -0.03 -0.93 16 30 H 0.14 0.21 7.13 -2.39 -0.02 0.20 16 31 H 0.07 0.17 7.53 -2.39 -0.02 0.15 16 32 H 0.09 0.02 6.02 -2.39 -0.01 0.00 16 33 H 0.09 0.10 7.89 -2.39 -0.02 0.08 16 34 H 0.11 1.06 7.89 -2.38 -0.02 1.04 16 35 H 0.06 1.23 7.42 -2.39 -0.02 1.21 16 36 H 0.04 0.88 8.14 -2.38 -0.02 0.87 16 37 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 38 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 39 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 40 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 41 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 42 H 0.07 1.98 8.14 -2.38 -0.02 1.96 16 43 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 44 H 0.02 0.68 8.14 -2.39 -0.02 0.66 16 45 H 0.02 0.97 8.14 -2.39 -0.02 0.95 16 46 H 0.37 17.15 5.53 -92.71 -0.51 16.63 16 47 H 0.26 16.16 8.31 -92.71 -0.77 15.39 16 48 H 0.08 0.51 8.14 -2.39 -0.02 0.49 16 49 H 0.10 1.03 7.74 -2.38 -0.02 1.01 16 50 H 0.05 0.76 7.57 -2.39 -0.02 0.75 16 51 H 0.08 0.64 8.14 -2.39 -0.02 0.62 16 52 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 53 H 0.09 0.78 8.14 -2.38 -0.02 0.76 16 54 H 0.08 0.96 7.78 -2.38 -0.02 0.94 16 55 H 0.03 0.84 6.14 -2.39 -0.01 0.83 16 Total: -1.00 -85.36 419.74 2.75 -82.61 By element: Atomic # 1 Polarization: 21.69 SS G_CDS: 0.27 Total: 21.96 kcal Atomic # 6 Polarization: -15.20 SS G_CDS: 5.70 Total: -9.50 kcal Atomic # 7 Polarization: -111.29 SS G_CDS: -3.93 Total: -115.22 kcal Atomic # 8 Polarization: -27.34 SS G_CDS: -1.19 Total: -28.53 kcal Atomic # 14 Polarization: 46.78 SS G_CDS: 1.90 Total: 48.69 kcal Total: -85.36 2.75 -82.61 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001566004246.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.216 kcal (2) G-P(sol) polarization free energy of solvation -85.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.574 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.750 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.608 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.823 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds