Wall clock time and date at job start Tue Mar 31 2020 22:03:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.42900 * 109.46691 * 2 1 4 4 C 1.42907 * 114.00156 * 184.91716 * 3 2 1 5 5 H 1.08999 * 109.46743 * 12.86553 * 4 3 2 6 6 C 1.52989 * 109.47353 * 132.86631 * 4 3 2 7 7 C 1.50704 * 109.47443 * 295.00207 * 6 4 3 8 8 O 1.21283 * 119.99541 * 0.02562 * 7 6 4 9 9 N 1.34776 * 120.00351 * 179.97438 * 7 6 4 10 10 C 1.46494 * 120.00344 * 180.02562 * 9 7 6 11 11 C 1.53138 * 109.43751 * 120.30606 * 10 9 7 12 12 C 1.54255 * 108.84449 * 66.08618 * 11 10 9 13 13 H 1.09003 * 112.32957 * 187.68857 * 12 11 10 14 14 C 1.54607 * 107.85182 * 312.47602 * 12 11 10 15 15 C 1.53796 * 104.84800 * 88.47264 * 14 12 11 16 16 C 1.54602 * 104.85290 * 359.97438 * 15 14 12 17 17 H 1.09004 * 112.69405 * 146.96602 * 16 15 14 18 18 C 1.53151 * 109.43418 * 240.53417 * 10 9 7 19 19 N 1.48294 * 106.98868 * 64.13293 * 12 11 10 20 20 C 1.36927 * 128.21146 * 107.53409 * 19 12 11 21 21 H 1.08005 * 120.00497 * 166.30698 * 20 19 12 22 22 C 1.38809 * 120.00083 * 346.29973 * 20 19 12 23 23 N 1.31621 * 119.99969 * 349.52728 * 22 20 19 24 24 Si 1.86802 * 120.00198 * 169.52702 * 22 20 19 25 25 H 1.48508 * 109.47309 * 180.02562 * 24 22 20 26 26 H 1.48500 * 109.47001 * 300.00237 * 24 22 20 27 27 H 1.48501 * 109.47282 * 60.00447 * 24 22 20 28 28 C 1.53003 * 109.46938 * 252.87313 * 4 3 2 29 29 C 1.52997 * 109.47371 * 54.64828 * 28 4 3 30 30 C 1.53000 * 109.46754 * 174.65269 * 28 4 3 31 31 H 1.09002 * 109.47175 * 60.00546 * 1 2 3 32 32 H 1.09009 * 109.46751 * 179.97438 * 1 2 3 33 33 H 1.08988 * 109.47494 * 299.99686 * 1 2 3 34 34 H 1.09000 * 109.47776 * 240.00122 * 2 1 3 35 35 H 1.09002 * 109.47175 * 119.99454 * 2 1 3 36 36 H 1.09004 * 109.47291 * 175.00328 * 6 4 3 37 37 H 1.08999 * 109.47336 * 55.00095 * 6 4 3 38 38 H 0.97007 * 119.99632 * 359.97438 * 9 7 6 39 39 H 1.09007 * 109.39655 * 0.41883 * 10 9 7 40 40 H 1.08999 * 109.57104 * 185.99482 * 11 10 9 41 41 H 1.09004 * 109.57121 * 306.35774 * 11 10 9 42 42 H 1.09001 * 110.37498 * 207.16933 * 14 12 11 43 43 H 1.08998 * 110.38792 * 329.42142 * 14 12 11 44 44 H 1.09003 * 110.42499 * 241.08823 * 15 14 12 45 45 H 1.09002 * 110.23853 * 118.80223 * 15 14 12 46 46 H 1.08998 * 109.56682 * 174.00644 * 18 10 9 47 47 H 1.08993 * 109.66809 * 53.70013 * 18 10 9 48 48 H 0.97007 * 120.00166 * 179.97438 * 23 22 20 49 49 H 1.08999 * 109.46790 * 294.64155 * 28 4 3 50 50 H 1.08994 * 109.47183 * 57.02965 * 29 28 4 51 51 H 1.09004 * 109.46646 * 177.03010 * 29 28 4 52 52 H 1.09001 * 109.47204 * 297.02460 * 29 28 4 53 53 H 1.08994 * 109.47404 * 59.99446 * 30 28 4 54 54 H 1.08999 * 109.46954 * 179.97438 * 30 28 4 55 55 H 1.09002 * 109.46775 * 299.99507 * 30 28 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4263 1.4619 -0.1119 5 1 3.8466 0.4993 -0.4033 6 6 3.7715 2.5107 -1.1709 7 6 3.3023 2.0342 -2.5215 8 8 2.7461 0.9616 -2.6265 9 7 3.4999 2.8005 -3.6125 10 6 3.0433 2.3376 -4.9252 11 6 2.0372 3.3403 -5.4975 12 6 2.7657 4.6699 -5.7820 13 1 2.0778 5.4667 -6.0653 14 6 3.6086 5.0246 -4.5354 15 6 4.9619 4.3306 -4.7642 16 6 4.8161 3.6178 -6.1283 17 1 5.7519 3.5817 -6.6861 18 6 4.2438 2.2157 -5.8684 19 7 3.7711 4.3960 -6.8371 20 6 3.7439 4.7763 -8.1522 21 1 4.6372 4.7014 -8.7546 22 6 2.5682 5.2578 -8.7113 23 7 1.4354 5.1585 -8.0485 24 14 2.5937 6.0469 -10.4043 25 1 1.2201 6.4760 -10.7712 26 1 3.4927 7.2287 -10.3861 27 1 3.0885 5.0638 -11.4012 28 6 4.0115 1.8867 1.2365 29 6 3.5551 0.9091 2.3213 30 6 5.5393 1.8803 1.1541 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0278 -0.0005 33 1 -0.3634 0.5137 0.8899 34 1 1.8935 -0.5138 -0.8900 35 1 1.8934 -0.5138 0.8900 36 1 4.8507 2.6623 -1.1939 37 1 3.2776 3.4509 -0.9257 38 1 3.9437 3.6590 -3.5283 39 1 2.5648 1.3639 -4.8195 40 1 1.6164 2.9474 -6.4231 41 1 1.2391 3.5098 -4.7746 42 1 3.7455 6.1037 -4.4644 43 1 3.1310 4.6431 -3.6330 44 1 5.1549 3.6040 -3.9750 45 1 5.7623 5.0694 -4.8051 46 1 3.9238 1.7714 -6.8109 47 1 5.0082 1.5885 -5.4099 48 1 0.6138 5.4954 -8.4390 49 1 3.6652 2.8904 1.4828 50 1 3.8558 -0.1025 2.0486 51 1 4.0143 1.1809 3.2718 52 1 2.4701 0.9525 2.4164 53 1 5.8644 2.5767 0.3812 54 1 5.9562 2.1833 2.1145 55 1 5.8856 0.8765 0.9077 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001566819977.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:03:03 Heat of formation + Delta-G solvation = -17.399344 kcal Electronic energy + Delta-G solvation = -32237.683983 eV Core-core repulsion = 28277.111805 eV Total energy + Delta-G solvation = -3960.572178 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.51031 -40.36842 -38.89035 -36.00694 -35.77186 -33.89858 -33.05903 -32.28043 -31.88529 -31.12541 -30.37277 -27.81222 -26.56005 -25.12953 -24.84360 -23.63365 -22.96891 -21.60534 -21.16332 -20.97476 -20.65122 -18.96877 -18.10732 -17.90342 -16.86366 -16.72495 -16.38671 -15.99089 -15.87873 -15.24793 -15.16496 -14.98122 -14.58866 -14.51718 -14.49787 -14.31676 -14.07166 -13.75570 -13.58370 -13.36085 -13.25481 -13.19266 -12.99199 -12.88636 -12.82731 -12.75871 -12.66021 -12.49842 -12.39279 -12.08132 -12.04706 -11.91434 -11.87449 -11.72852 -11.59388 -11.43512 -11.38522 -11.16128 -11.00173 -10.59619 -10.51860 -10.22497 -9.55205 -8.75750 -7.81717 -5.15800 1.48109 1.49443 1.55686 1.83661 2.43892 2.51885 2.85473 3.35088 3.56042 3.77013 3.82386 3.95290 3.97336 4.09896 4.18520 4.19621 4.26169 4.29695 4.33184 4.34216 4.43201 4.47981 4.50282 4.53558 4.57446 4.59976 4.71009 4.78244 4.82538 4.85900 4.90800 4.96852 4.97432 5.03102 5.05444 5.10016 5.11747 5.13604 5.15870 5.25787 5.28595 5.30579 5.31618 5.46335 5.47902 5.50580 5.55677 5.62016 5.82538 5.87150 6.28678 6.44509 6.73724 7.10756 7.45046 7.78232 8.57546 9.28647 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.021315 B = 0.002835 C = 0.002653 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1313.311761 B = 9872.438812 C =10550.119353 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.063 3.937 3 O -0.392 6.392 4 C 0.110 3.890 5 H 0.056 0.944 6 C -0.147 4.147 7 C 0.495 3.505 8 O -0.585 6.585 9 N -0.730 5.730 10 C 0.157 3.843 11 C -0.112 4.112 12 C 0.174 3.826 13 H 0.072 0.928 14 C -0.162 4.162 15 C -0.146 4.146 16 C 0.141 3.859 17 H 0.073 0.927 18 C -0.129 4.129 19 N -0.605 5.605 20 C -0.232 4.232 21 H 0.077 0.923 22 C -0.060 4.060 23 N -0.936 5.936 24 Si 0.969 3.031 25 H -0.299 1.299 26 H -0.280 1.280 27 H -0.281 1.281 28 C -0.106 4.106 29 C -0.145 4.145 30 C -0.149 4.149 31 H 0.040 0.960 32 H 0.083 0.917 33 H 0.066 0.934 34 H 0.036 0.964 35 H 0.058 0.942 36 H 0.135 0.865 37 H 0.111 0.889 38 H 0.433 0.567 39 H 0.064 0.936 40 H 0.037 0.963 41 H 0.039 0.961 42 H 0.066 0.934 43 H 0.098 0.902 44 H 0.109 0.891 45 H 0.079 0.921 46 H 0.044 0.956 47 H 0.074 0.926 48 H 0.245 0.755 49 H 0.080 0.920 50 H 0.050 0.950 51 H 0.068 0.932 52 H 0.050 0.950 53 H 0.069 0.931 54 H 0.070 0.930 55 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.187 -5.886 21.355 23.616 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.014 4.014 3 O -0.311 6.311 4 C 0.051 3.949 5 H 0.074 0.926 6 C -0.186 4.186 7 C 0.283 3.717 8 O -0.466 6.466 9 N -0.404 5.404 10 C 0.051 3.949 11 C -0.153 4.153 12 C 0.067 3.933 13 H 0.090 0.910 14 C -0.201 4.201 15 C -0.185 4.185 16 C 0.034 3.966 17 H 0.091 0.909 18 C -0.169 4.169 19 N -0.326 5.326 20 C -0.361 4.361 21 H 0.095 0.905 22 C -0.254 4.254 23 N -0.584 5.584 24 Si 0.799 3.201 25 H -0.225 1.225 26 H -0.206 1.206 27 H -0.208 1.208 28 C -0.125 4.125 29 C -0.202 4.202 30 C -0.206 4.206 31 H 0.059 0.941 32 H 0.102 0.898 33 H 0.085 0.915 34 H 0.054 0.946 35 H 0.076 0.924 36 H 0.152 0.848 37 H 0.129 0.871 38 H 0.295 0.705 39 H 0.082 0.918 40 H 0.056 0.944 41 H 0.057 0.943 42 H 0.084 0.916 43 H 0.116 0.884 44 H 0.126 0.874 45 H 0.098 0.902 46 H 0.063 0.937 47 H 0.092 0.908 48 H 0.054 0.946 49 H 0.099 0.901 50 H 0.069 0.931 51 H 0.087 0.913 52 H 0.069 0.931 53 H 0.088 0.912 54 H 0.089 0.911 55 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 7.579 -6.309 21.078 23.271 hybrid contribution -0.543 0.322 -1.678 1.793 sum 7.036 -5.986 19.400 21.487 Atomic orbital electron populations 1.21713 0.93887 1.02745 1.01995 1.22513 0.95537 0.83671 0.99645 1.87808 1.21841 1.27116 1.94345 1.21925 0.81469 0.97643 0.93818 0.92565 1.22155 1.04928 1.01622 0.89919 1.21452 0.78185 0.84455 0.87596 1.90604 1.44238 1.24579 1.87185 1.48887 1.60402 1.24703 1.06403 1.20629 0.94619 0.97032 0.82592 1.22249 0.96721 0.98179 0.98140 1.21538 0.90953 0.94665 0.86131 0.91033 1.23201 0.96753 1.00965 0.99228 1.23082 0.97178 1.00159 0.98086 1.21791 0.92249 0.89898 0.92649 0.90861 1.22379 0.97424 0.99012 0.98086 1.45385 1.21338 1.60697 1.05229 1.19263 0.95035 1.35396 0.86374 0.90534 1.25512 0.94931 1.03527 1.01380 1.70058 0.97900 1.51364 1.39113 0.85295 0.75924 0.78595 0.80309 1.22546 1.20595 1.20768 1.21508 0.96619 1.00755 0.93642 1.21800 1.01217 0.98681 0.98483 1.21906 0.93197 1.02371 1.03094 0.94113 0.89831 0.91490 0.94573 0.92379 0.84753 0.87061 0.70533 0.91788 0.94385 0.94262 0.91552 0.88402 0.87354 0.90209 0.93734 0.90780 0.94609 0.90141 0.93138 0.91333 0.93091 0.91237 0.91145 0.92731 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.23 10.28 71.98 0.74 -2.49 16 2 C 0.06 1.52 5.72 71.98 0.41 1.93 16 3 O -0.39 -10.21 8.68 -135.18 -1.17 -11.38 16 4 C 0.11 2.29 1.39 30.59 0.04 2.34 16 5 H 0.06 1.30 7.40 -2.39 -0.02 1.28 16 6 C -0.15 -2.91 5.28 29.85 0.16 -2.75 16 7 C 0.49 14.48 7.71 87.66 0.68 15.15 16 8 O -0.59 -21.65 13.46 10.76 0.14 -21.51 16 9 N -0.73 -21.55 2.78 -442.07 -1.23 -22.78 16 10 C 0.16 5.85 3.15 45.09 0.14 5.99 16 11 C -0.11 -4.97 5.47 31.07 0.17 -4.80 16 12 C 0.17 7.82 3.20 45.62 0.15 7.97 16 13 H 0.07 3.83 6.25 -2.39 -0.01 3.82 16 14 C -0.16 -5.31 5.73 31.41 0.18 -5.13 16 15 C -0.15 -4.17 5.74 31.41 0.18 -3.99 16 16 C 0.14 5.24 4.32 45.41 0.20 5.43 16 17 H 0.07 2.63 8.14 -2.38 -0.02 2.61 16 18 C -0.13 -4.67 5.49 30.87 0.17 -4.50 16 19 N -0.60 -28.80 2.82 -636.23 -1.79 -30.59 16 20 C -0.23 -12.43 10.38 84.03 0.87 -11.55 16 21 H 0.08 3.97 7.85 -2.91 -0.02 3.94 16 22 C -0.06 -3.28 5.41 84.86 0.46 -2.82 16 23 N -0.94 -54.46 10.73 21.65 0.23 -54.23 16 24 Si 0.97 45.10 29.57 68.60 2.03 47.13 16 25 H -0.30 -14.18 7.11 99.48 0.71 -13.47 16 26 H -0.28 -12.59 7.11 99.48 0.71 -11.89 16 27 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 28 C -0.11 -1.59 2.70 -10.79 -0.03 -1.62 16 29 C -0.14 -2.08 7.99 71.98 0.57 -1.51 16 30 C -0.15 -1.63 8.96 71.98 0.65 -0.99 16 31 H 0.04 1.07 8.14 -2.39 -0.02 1.05 16 32 H 0.08 1.49 8.14 -2.38 -0.02 1.47 16 33 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 34 H 0.04 1.04 7.00 -2.39 -0.02 1.03 16 35 H 0.06 1.15 6.73 -2.39 -0.02 1.13 16 36 H 0.13 1.75 6.36 -2.38 -0.02 1.73 16 37 H 0.11 1.98 8.14 -2.39 -0.02 1.96 16 38 H 0.43 11.06 1.90 -115.96 -0.22 10.84 16 39 H 0.06 2.63 6.89 -2.38 -0.02 2.62 16 40 H 0.04 1.98 8.14 -2.39 -0.02 1.97 16 41 H 0.04 1.70 8.14 -2.38 -0.02 1.68 16 42 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 43 H 0.10 2.82 5.28 -2.39 -0.01 2.80 16 44 H 0.11 2.49 5.27 -2.39 -0.01 2.48 16 45 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 46 H 0.04 1.84 8.14 -2.39 -0.02 1.82 16 47 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 48 H 0.24 14.10 8.31 -92.70 -0.77 13.32 16 49 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 50 H 0.05 0.72 8.02 -2.39 -0.02 0.70 16 51 H 0.07 0.79 8.14 -2.38 -0.02 0.77 16 52 H 0.05 0.85 7.07 -2.39 -0.02 0.83 16 53 H 0.07 0.63 6.47 -2.39 -0.02 0.62 16 54 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 55 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 Total: -1.00 -68.17 401.21 4.59 -63.58 By element: Atomic # 1 Polarization: 32.47 SS G_CDS: 0.64 Total: 33.12 kcal Atomic # 6 Polarization: -9.07 SS G_CDS: 5.73 Total: -3.34 kcal Atomic # 7 Polarization: -104.81 SS G_CDS: -2.79 Total: -107.60 kcal Atomic # 8 Polarization: -31.87 SS G_CDS: -1.03 Total: -32.89 kcal Atomic # 14 Polarization: 45.10 SS G_CDS: 2.03 Total: 47.13 kcal Total: -68.17 4.59 -63.58 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001566819977.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.180 kcal (2) G-P(sol) polarization free energy of solvation -68.166 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.986 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.586 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.579 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.399 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds