Wall clock time and date at job start Tue Mar 31 2020 22:39:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42894 * 114.00316 * 2 1 4 4 C 1.52996 * 109.47638 * 179.97438 * 3 2 1 5 5 C 1.50693 * 109.47182 * 300.00180 * 4 3 2 6 6 O 1.21281 * 120.00095 * 239.99756 * 5 4 3 7 7 N 1.34780 * 120.00182 * 59.99417 * 5 4 3 8 8 C 1.46500 * 119.99910 * 180.02562 * 7 5 4 9 9 H 1.09002 * 109.47129 * 324.99754 * 8 7 5 10 10 C 1.52997 * 109.47473 * 85.00011 * 8 7 5 11 11 C 1.53000 * 109.47060 * 180.02562 * 10 8 7 12 12 C 1.53002 * 109.47233 * 299.99657 * 11 10 8 13 13 C 1.52997 * 109.46817 * 60.00194 * 12 11 10 14 14 H 1.09002 * 109.47153 * 60.00231 * 13 12 11 15 15 N 1.46500 * 109.47007 * 180.02562 * 13 12 11 16 16 C 1.36940 * 120.00263 * 275.00076 * 15 13 12 17 17 H 1.07999 * 119.99254 * 359.97438 * 16 15 13 18 18 C 1.38802 * 120.00349 * 180.02562 * 16 15 13 19 19 N 1.31621 * 120.00328 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 120.00046 * 180.02562 * 18 16 15 21 21 H 1.48491 * 109.47324 * 89.99574 * 20 18 16 22 22 H 1.48502 * 109.47082 * 209.99715 * 20 18 16 23 23 H 1.48494 * 109.47166 * 329.99227 * 20 18 16 24 24 C 1.52999 * 109.46944 * 205.00356 * 8 7 5 25 25 C 1.53002 * 109.47053 * 59.99852 * 4 3 2 26 26 C 1.53000 * 109.47256 * 180.02562 * 25 4 3 27 27 C 1.52999 * 109.47069 * 299.99726 * 26 25 4 28 28 C 1.53002 * 109.46858 * 60.00030 * 27 26 25 29 29 C 1.52999 * 109.47415 * 179.97438 * 4 3 2 30 30 H 1.09005 * 109.47446 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47165 * 300.00134 * 1 2 3 32 32 H 1.08999 * 109.47247 * 60.00278 * 1 2 3 33 33 H 1.08999 * 109.47647 * 59.99406 * 3 2 1 34 34 H 1.09004 * 109.46794 * 299.99818 * 3 2 1 35 35 H 0.96994 * 120.00115 * 0.02562 * 7 5 4 36 36 H 1.09002 * 109.47153 * 59.99757 * 10 8 7 37 37 H 1.09001 * 109.46832 * 299.99948 * 10 8 7 38 38 H 1.08992 * 109.47399 * 59.99823 * 11 10 8 39 39 H 1.09004 * 109.46724 * 180.02562 * 11 10 8 40 40 H 1.08993 * 109.47662 * 180.02562 * 12 11 10 41 41 H 1.09002 * 109.47075 * 300.00932 * 12 11 10 42 42 H 0.97002 * 120.00110 * 95.00836 * 15 13 12 43 43 H 0.97001 * 120.00668 * 180.02562 * 19 18 16 44 44 H 1.09000 * 109.47486 * 59.99569 * 24 8 7 45 45 H 1.09002 * 109.46716 * 299.99651 * 24 8 7 46 46 H 1.09005 * 109.47250 * 300.00347 * 25 4 3 47 47 H 1.09000 * 109.47618 * 59.99965 * 25 4 3 48 48 H 1.09007 * 109.47074 * 179.97438 * 26 25 4 49 49 H 1.08993 * 109.47003 * 60.00226 * 26 25 4 50 50 H 1.09004 * 109.47178 * 300.00093 * 27 26 25 51 51 H 1.08997 * 109.46868 * 180.02562 * 27 26 25 52 52 H 1.09000 * 109.46564 * 179.97438 * 28 27 26 53 53 H 1.08996 * 109.46895 * 60.00198 * 28 27 26 54 54 H 1.09004 * 109.47178 * 300.00130 * 29 4 3 55 55 H 1.09000 * 109.46920 * 60.00361 * 29 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1846 0.0006 5 6 3.9796 0.4370 1.2313 6 8 4.7209 0.9696 2.0299 7 7 3.5530 -0.8236 1.4447 8 6 3.9844 -1.5501 2.6415 9 1 5.0088 -1.2700 2.8871 10 6 3.0645 -1.1970 3.8119 11 6 3.5156 -1.9553 5.0619 12 6 3.4487 -3.4608 4.7970 13 6 4.3686 -3.8139 3.6265 14 1 5.3929 -3.5333 3.8720 15 7 4.3041 -5.2553 3.3725 16 6 5.0994 -6.1125 4.0852 17 1 5.7744 -5.7258 4.8343 18 6 5.0387 -7.4781 3.8441 19 7 4.2164 -7.9493 2.9308 20 14 6.1230 -8.6474 4.8169 21 1 5.4064 -9.0833 6.0422 22 1 6.4448 -9.8334 3.9832 23 1 7.3800 -7.9550 5.1985 24 6 3.9172 -3.0554 2.3761 25 6 3.9874 0.4251 -1.2483 26 6 5.5126 0.3038 -1.2474 27 6 6.1354 1.7013 -1.2472 28 6 5.6834 2.4608 0.0018 29 6 4.1577 2.5823 0.0000 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8899 32 1 -0.3634 0.5138 -0.8900 33 1 1.6886 1.8464 0.8899 34 1 1.6886 1.8463 -0.8901 35 1 2.9604 -1.2497 0.8060 36 1 2.0402 -1.4771 3.5663 37 1 3.1125 -0.1245 4.0009 38 1 4.5398 -1.6748 5.3073 39 1 2.8599 -1.7040 5.8956 40 1 3.7695 -4.0011 5.6875 41 1 2.4244 -3.7413 4.5514 42 1 3.6981 -5.6025 2.6993 43 1 4.1737 -8.9036 2.7625 44 1 4.5725 -3.3071 1.5423 45 1 2.8928 -3.3356 2.1305 46 1 3.5440 -0.5707 -1.2483 47 1 3.6661 0.9658 -2.1385 48 1 5.8345 -0.2378 -2.1369 49 1 5.8334 -0.2372 -0.3572 50 1 5.8144 2.2422 -2.1374 51 1 7.2219 1.6148 -1.2470 52 1 6.1274 3.4562 0.0021 53 1 6.0043 1.9199 0.8919 54 1 3.8364 3.1227 -0.8905 55 1 3.8358 3.1238 0.8896 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001567168742.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:39:15 Heat of formation + Delta-G solvation = -124.812933 kcal Electronic energy + Delta-G solvation = -31885.484140 eV Core-core repulsion = 27920.254159 eV Total energy + Delta-G solvation = -3965.229981 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.92139 -39.87480 -38.61251 -37.83803 -36.16467 -34.79942 -33.21619 -32.87290 -31.68278 -30.44951 -29.32981 -27.96351 -26.04752 -25.71922 -24.49239 -23.55075 -23.13081 -22.21338 -21.53189 -21.09801 -20.15272 -19.06742 -17.65549 -17.45137 -17.13981 -16.91144 -16.51753 -16.32150 -16.00024 -15.56423 -15.49873 -15.23199 -15.14128 -15.07833 -14.85897 -14.56985 -14.37871 -14.21207 -13.59254 -13.51108 -13.36411 -13.08782 -12.97431 -12.92787 -12.90194 -12.80788 -12.68840 -12.27408 -12.17019 -12.13467 -12.04559 -11.97873 -11.95882 -11.69555 -11.55835 -11.43372 -11.31979 -11.07418 -11.00177 -10.87186 -10.59915 -10.33791 -9.84942 -8.99945 -7.93540 -5.21650 1.47070 1.48250 1.56672 1.74216 2.26270 2.57008 2.76308 3.39416 3.63286 3.64863 3.65575 3.84342 3.87902 4.01511 4.06132 4.19681 4.27560 4.28322 4.31282 4.38718 4.44640 4.49687 4.52373 4.56031 4.56728 4.59218 4.62018 4.64930 4.67465 4.68575 4.74894 4.77155 4.92842 4.96603 5.01890 5.05068 5.13716 5.15175 5.17433 5.21289 5.25151 5.29943 5.34537 5.39541 5.40365 5.49291 5.51332 5.56163 5.64732 5.76400 6.20228 6.28957 6.74839 7.35063 7.42416 8.10374 8.34879 9.29850 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.014222 B = 0.002822 C = 0.002718 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1968.355174 B = 9918.164053 C =10298.575993 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.407 6.407 3 C 0.075 3.925 4 C -0.070 4.070 5 C 0.524 3.476 6 O -0.576 6.576 7 N -0.705 5.705 8 C 0.158 3.842 9 H 0.063 0.937 10 C -0.111 4.111 11 C -0.106 4.106 12 C -0.125 4.125 13 C 0.178 3.822 14 H 0.034 0.966 15 N -0.735 5.735 16 C -0.238 4.238 17 H 0.072 0.928 18 C -0.074 4.074 19 N -0.968 5.968 20 Si 0.969 3.031 21 H -0.287 1.287 22 H -0.295 1.295 23 H -0.272 1.272 24 C -0.112 4.112 25 C -0.098 4.098 26 C -0.126 4.126 27 C -0.114 4.114 28 C -0.133 4.133 29 C -0.087 4.087 30 H 0.090 0.910 31 H 0.043 0.957 32 H 0.058 0.942 33 H 0.051 0.949 34 H 0.088 0.912 35 H 0.412 0.588 36 H 0.069 0.931 37 H 0.058 0.942 38 H 0.057 0.943 39 H 0.076 0.924 40 H 0.042 0.958 41 H 0.052 0.948 42 H 0.373 0.627 43 H 0.251 0.749 44 H 0.056 0.944 45 H 0.070 0.930 46 H 0.069 0.931 47 H 0.097 0.903 48 H 0.074 0.926 49 H 0.031 0.969 50 H 0.081 0.919 51 H 0.055 0.945 52 H 0.068 0.932 53 H 0.059 0.941 54 H 0.096 0.904 55 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.073 25.051 -10.741 28.159 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.326 6.326 3 C -0.002 4.002 4 C -0.074 4.074 5 C 0.312 3.688 6 O -0.457 6.457 7 N -0.357 5.357 8 C 0.053 3.947 9 H 0.081 0.919 10 C -0.149 4.149 11 C -0.145 4.145 12 C -0.165 4.165 13 C 0.070 3.930 14 H 0.052 0.948 15 N -0.375 5.375 16 C -0.370 4.370 17 H 0.090 0.910 18 C -0.266 4.266 19 N -0.619 5.619 20 Si 0.799 3.201 21 H -0.214 1.214 22 H -0.221 1.221 23 H -0.197 1.197 24 C -0.151 4.151 25 C -0.135 4.135 26 C -0.164 4.164 27 C -0.152 4.152 28 C -0.171 4.171 29 C -0.124 4.124 30 H 0.109 0.891 31 H 0.061 0.939 32 H 0.077 0.923 33 H 0.069 0.931 34 H 0.106 0.894 35 H 0.251 0.749 36 H 0.088 0.912 37 H 0.077 0.923 38 H 0.075 0.925 39 H 0.094 0.906 40 H 0.061 0.939 41 H 0.071 0.929 42 H 0.205 0.795 43 H 0.059 0.941 44 H 0.074 0.926 45 H 0.089 0.911 46 H 0.087 0.913 47 H 0.115 0.885 48 H 0.093 0.907 49 H 0.050 0.950 50 H 0.100 0.900 51 H 0.074 0.926 52 H 0.087 0.913 53 H 0.077 0.923 54 H 0.115 0.885 55 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -6.303 25.178 -10.073 27.841 hybrid contribution 0.013 -1.357 0.323 1.395 sum -6.290 23.821 -9.750 26.497 Atomic orbital electron populations 1.22864 0.79239 1.03630 1.00826 1.87701 1.21436 1.27931 1.95557 1.22541 0.90237 0.85268 1.02149 1.20982 0.95395 0.97424 0.93559 1.20839 0.79122 0.81617 0.87250 1.90602 1.37872 1.68476 1.48728 1.46155 1.50201 1.14518 1.24799 1.20693 0.98278 0.90255 0.85491 0.91854 1.21751 0.99403 0.99525 0.94249 1.21417 1.01515 0.93972 0.97554 1.22076 1.00001 0.95451 0.98974 1.20301 0.96519 0.83055 0.93160 0.94781 1.42572 1.48183 1.01404 1.45337 1.19584 1.14920 0.88607 1.13903 0.91045 1.25495 1.01772 0.98473 1.00893 1.69806 1.42202 1.12593 1.37292 0.85198 0.78716 0.78558 0.77671 1.21436 1.22141 1.19702 1.21850 1.01938 0.93227 0.98050 1.21531 0.95229 1.00711 0.96041 1.21592 0.95844 0.97742 1.01203 1.21524 0.99840 0.95313 0.98502 1.21733 0.95654 1.00768 0.98905 1.21313 0.95432 0.92738 1.02967 0.89118 0.93861 0.92344 0.93096 0.89421 0.74938 0.91199 0.92288 0.92462 0.90574 0.93912 0.92871 0.79472 0.94057 0.92566 0.91108 0.91254 0.88472 0.90734 0.94996 0.90049 0.92573 0.91306 0.92285 0.88525 0.92175 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.35 11.01 113.37 1.25 1.60 16 2 O -0.41 -6.52 7.53 -148.98 -1.12 -7.64 16 3 C 0.07 1.05 4.79 71.98 0.35 1.40 16 4 C -0.07 -1.26 0.52 -52.93 -0.03 -1.29 16 5 C 0.52 13.60 4.92 87.65 0.43 14.03 16 6 O -0.58 -18.87 13.32 -3.03 -0.04 -18.91 16 7 N -0.70 -18.18 4.61 -442.54 -2.04 -20.22 16 8 C 0.16 4.73 2.45 44.99 0.11 4.84 16 9 H 0.06 2.18 7.58 -2.39 -0.02 2.16 16 10 C -0.11 -3.05 5.49 30.59 0.17 -2.88 16 11 C -0.11 -3.07 5.92 30.60 0.18 -2.89 16 12 C -0.12 -4.52 5.50 30.59 0.17 -4.35 16 13 C 0.18 7.26 2.77 45.01 0.12 7.38 16 14 H 0.03 1.47 8.08 -2.39 -0.02 1.45 16 15 N -0.74 -37.63 5.12 -322.86 -1.65 -39.28 16 16 C -0.24 -13.47 9.93 84.03 0.83 -12.63 16 17 H 0.07 3.93 7.83 -2.91 -0.02 3.91 16 18 C -0.07 -4.30 5.50 84.86 0.47 -3.84 16 19 N -0.97 -59.53 13.06 21.65 0.28 -59.24 16 20 Si 0.97 46.84 29.55 68.60 2.03 48.87 16 21 H -0.29 -13.63 7.11 99.48 0.71 -12.92 16 22 H -0.29 -14.28 7.11 99.48 0.71 -13.58 16 23 H -0.27 -12.55 7.11 99.48 0.71 -11.84 16 24 C -0.11 -3.77 4.86 30.61 0.15 -3.62 16 25 C -0.10 -1.57 4.49 30.59 0.14 -1.44 16 26 C -0.13 -2.41 5.70 30.59 0.17 -2.24 16 27 C -0.11 -1.93 5.92 30.59 0.18 -1.75 16 28 C -0.13 -2.60 5.63 30.61 0.17 -2.43 16 29 C -0.09 -1.42 4.38 30.61 0.13 -1.28 16 30 H 0.09 1.01 8.14 -2.38 -0.02 0.99 16 31 H 0.04 0.47 8.14 -2.39 -0.02 0.46 16 32 H 0.06 0.47 8.14 -2.39 -0.02 0.45 16 33 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 34 H 0.09 0.78 8.14 -2.38 -0.02 0.76 16 35 H 0.41 9.74 5.98 -92.71 -0.55 9.18 16 36 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 37 H 0.06 1.65 8.14 -2.39 -0.02 1.64 16 38 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 39 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 40 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 41 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 42 H 0.37 20.30 7.80 -92.71 -0.72 19.58 16 43 H 0.25 14.94 8.31 -92.71 -0.77 14.17 16 44 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 45 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16 46 H 0.07 1.23 7.10 -2.38 -0.02 1.21 16 47 H 0.10 1.10 8.14 -2.39 -0.02 1.08 16 48 H 0.07 1.27 8.14 -2.38 -0.02 1.25 16 49 H 0.03 0.81 7.22 -2.39 -0.02 0.79 16 50 H 0.08 1.01 8.14 -2.38 -0.02 1.00 16 51 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 52 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 53 H 0.06 1.61 5.51 -2.39 -0.01 1.60 16 54 H 0.10 1.01 8.14 -2.38 -0.02 0.99 16 55 H 0.06 1.09 8.10 -2.39 -0.02 1.07 16 Total: -1.00 -68.40 412.52 2.03 -66.37 By element: Atomic # 1 Polarization: 41.89 SS G_CDS: -0.42 Total: 41.47 kcal Atomic # 6 Polarization: -16.40 SS G_CDS: 5.00 Total: -11.40 kcal Atomic # 7 Polarization: -115.34 SS G_CDS: -3.41 Total: -118.75 kcal Atomic # 8 Polarization: -25.39 SS G_CDS: -1.16 Total: -26.56 kcal Atomic # 14 Polarization: 46.84 SS G_CDS: 2.03 Total: 48.87 kcal Total: -68.40 2.03 -66.37 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567168742.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.443 kcal (2) G-P(sol) polarization free energy of solvation -68.399 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.841 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.370 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.813 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds