Wall clock time and date at job start Tue Mar 31 2020 22:39:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42895 * 114.00111 * 2 1 4 4 C 1.53000 * 109.47259 * 180.02562 * 3 2 1 5 5 C 1.50694 * 109.47174 * 300.00108 * 4 3 2 6 6 O 1.21283 * 120.00363 * 239.99943 * 5 4 3 7 7 N 1.34784 * 119.99988 * 60.00061 * 5 4 3 8 8 C 1.46493 * 119.99864 * 179.72721 * 7 5 4 9 9 H 1.09003 * 109.47333 * 324.99821 * 8 7 5 10 10 C 1.52999 * 109.47638 * 84.99998 * 8 7 5 11 11 C 1.53000 * 109.47136 * 59.99350 * 10 8 7 12 12 C 1.53007 * 109.46876 * 60.00387 * 11 10 8 13 13 C 1.52996 * 109.46916 * 300.00120 * 12 11 10 14 14 H 1.09003 * 109.47116 * 299.99612 * 13 12 11 15 15 N 1.46506 * 109.46969 * 179.97438 * 13 12 11 16 16 C 1.36935 * 120.00085 * 84.99554 * 15 13 12 17 17 H 1.08008 * 119.99906 * 0.02562 * 16 15 13 18 18 C 1.38811 * 120.00298 * 179.97438 * 16 15 13 19 19 N 1.31618 * 120.00112 * 180.02562 * 18 16 15 20 20 Si 1.86802 * 119.99888 * 0.02562 * 18 16 15 21 21 H 1.48502 * 109.47059 * 89.99596 * 20 18 16 22 22 H 1.48491 * 109.47040 * 209.99497 * 20 18 16 23 23 H 1.48494 * 109.46950 * 329.99934 * 20 18 16 24 24 C 1.53000 * 109.47446 * 60.00229 * 13 12 11 25 25 C 1.53000 * 109.46922 * 60.00302 * 4 3 2 26 26 C 1.53000 * 109.46922 * 179.97438 * 25 4 3 27 27 C 1.53003 * 109.47177 * 300.00135 * 26 25 4 28 28 C 1.52995 * 109.47306 * 59.99758 * 27 26 25 29 29 C 1.53000 * 109.47200 * 300.00228 * 28 27 26 30 30 H 1.09001 * 109.47489 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.46893 * 299.99109 * 1 2 3 32 32 H 1.08994 * 109.47835 * 59.99150 * 1 2 3 33 33 H 1.09000 * 109.47123 * 60.00484 * 3 2 1 34 34 H 1.08998 * 109.47332 * 300.00947 * 3 2 1 35 35 H 0.97000 * 119.99339 * 0.02562 * 7 5 4 36 36 H 1.08994 * 109.47399 * 179.97438 * 10 8 7 37 37 H 1.09003 * 109.46886 * 300.00173 * 10 8 7 38 38 H 1.09004 * 109.47221 * 179.97438 * 11 10 8 39 39 H 1.09003 * 109.47466 * 300.00584 * 11 10 8 40 40 H 1.09003 * 109.46912 * 59.99857 * 12 11 10 41 41 H 1.08996 * 109.47219 * 179.97438 * 12 11 10 42 42 H 0.96998 * 120.00076 * 265.00407 * 15 13 12 43 43 H 0.96997 * 119.99938 * 180.02562 * 19 18 16 44 44 H 1.09004 * 109.47221 * 180.02562 * 24 13 12 45 45 H 1.08994 * 109.47255 * 59.99752 * 24 13 12 46 46 H 1.08995 * 109.47131 * 299.99850 * 25 4 3 47 47 H 1.08998 * 109.47544 * 60.00297 * 25 4 3 48 48 H 1.09000 * 109.47156 * 179.97438 * 26 25 4 49 49 H 1.09007 * 109.47356 * 59.99868 * 26 25 4 50 50 H 1.08998 * 109.47015 * 299.99535 * 27 26 25 51 51 H 1.09002 * 109.47113 * 180.02562 * 27 26 25 52 52 H 1.08995 * 109.47132 * 180.02562 * 28 27 26 53 53 H 1.09007 * 109.46935 * 60.00447 * 28 27 26 54 54 H 1.08998 * 109.46768 * 300.00007 * 29 28 27 55 55 H 1.09000 * 109.47156 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1846 -0.0006 5 6 3.9806 0.4365 1.2294 6 8 4.7226 0.9688 2.0276 7 7 3.5542 -0.8242 1.4426 8 6 3.9918 -1.5535 2.6354 9 1 5.0177 -1.2747 2.8759 10 6 3.0788 -1.2021 3.8117 11 6 1.6387 -1.5934 3.4743 12 6 1.5686 -3.0982 3.2062 13 6 2.4817 -3.4496 2.0299 14 1 2.1561 -2.9069 1.1424 15 7 2.4151 -4.8906 1.7736 16 6 1.4197 -5.4001 0.9832 17 1 0.6839 -4.7397 0.5484 18 6 1.3569 -6.7653 0.7399 19 7 0.4004 -7.2549 -0.0202 20 14 2.6298 -7.9075 1.4913 21 1 2.1543 -8.3737 2.8186 22 1 2.8330 -9.0772 0.5994 23 1 3.9138 -7.1794 1.6532 24 6 3.9218 -3.0583 2.3674 25 6 3.9863 0.4256 -1.2503 26 6 5.5116 0.3054 -1.2512 27 6 6.1334 1.7034 -1.2514 28 6 5.6825 2.4623 -0.0019 29 6 4.1572 2.5826 -0.0009 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3633 0.5137 0.8901 32 1 -0.3634 0.5139 -0.8898 33 1 1.6887 1.8463 0.8900 34 1 1.6885 1.8464 -0.8899 35 1 2.9611 -1.2500 0.8040 36 1 3.4041 -1.7451 4.6991 37 1 3.1286 -0.1300 4.0027 38 1 0.9883 -1.3434 4.3125 39 1 1.3131 -1.0507 2.5868 40 1 1.8942 -3.6409 4.0937 41 1 0.5426 -3.3771 2.9662 42 1 3.0760 -5.4836 2.1639 43 1 0.3563 -8.2089 -0.1899 44 1 4.5722 -3.3083 1.5291 45 1 4.2473 -3.6010 3.2548 46 1 3.5430 -0.5701 -1.2503 47 1 3.6644 0.9667 -2.1400 48 1 5.8328 -0.2357 -2.1412 49 1 5.8340 -0.2355 -0.3614 50 1 5.8111 2.2442 -2.1412 51 1 7.2201 1.6177 -1.2526 52 1 6.1251 3.4584 -0.0023 53 1 6.0049 1.9214 0.8879 54 1 3.8349 3.1234 -0.8907 55 1 3.8359 3.1237 0.8891 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001567168743.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:39:19 Heat of formation + Delta-G solvation = -117.693256 kcal Electronic energy + Delta-G solvation = -32928.752960 eV Core-core repulsion = 28963.831712 eV Total energy + Delta-G solvation = -3964.921248 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.97604 -40.01564 -38.62803 -37.77240 -36.17734 -34.44603 -33.33508 -32.96507 -31.67210 -30.69699 -29.79165 -27.98402 -26.05498 -25.39961 -24.41881 -23.54123 -23.19317 -22.39858 -21.76981 -20.67693 -20.06278 -19.42056 -17.71370 -17.27479 -17.11296 -16.78638 -16.59049 -16.43600 -16.20196 -15.62739 -15.50601 -15.34610 -15.07828 -14.91923 -14.75150 -14.56915 -14.41070 -14.16750 -13.72266 -13.48564 -13.16576 -13.10674 -13.02549 -12.98430 -12.93533 -12.87172 -12.80503 -12.69591 -12.38495 -12.15298 -11.96627 -11.94583 -11.80108 -11.65161 -11.55274 -11.45649 -11.07586 -11.01780 -10.98845 -10.85499 -10.60539 -10.35066 -9.79968 -9.26559 -7.98389 -5.30662 1.39632 1.41896 1.49193 1.76301 2.35358 2.51250 2.76450 3.33391 3.47667 3.66134 3.68268 3.84320 3.86688 3.95854 4.04317 4.18775 4.23488 4.27749 4.31014 4.36178 4.38994 4.48975 4.53066 4.53728 4.56715 4.60361 4.63010 4.66677 4.67944 4.72094 4.76855 4.81066 4.93390 4.94819 4.96953 5.06447 5.11030 5.15490 5.18638 5.23332 5.25978 5.29692 5.37562 5.40543 5.40788 5.51659 5.56051 5.64563 5.79846 5.83158 6.20250 6.25755 6.76422 7.12190 7.42999 7.88825 8.07754 9.23207 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.013463 B = 0.003577 C = 0.003559 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2079.314128 B = 7826.248350 C = 7865.510077 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.406 6.406 3 C 0.071 3.929 4 C -0.071 4.071 5 C 0.527 3.473 6 O -0.574 6.574 7 N -0.705 5.705 8 C 0.154 3.846 9 H 0.080 0.920 10 C -0.118 4.118 11 C -0.105 4.105 12 C -0.126 4.126 13 C 0.183 3.817 14 H 0.043 0.957 15 N -0.752 5.752 16 C -0.220 4.220 17 H 0.058 0.942 18 C -0.064 4.064 19 N -0.985 5.985 20 Si 0.950 3.050 21 H -0.281 1.281 22 H -0.299 1.299 23 H -0.252 1.252 24 C -0.126 4.126 25 C -0.100 4.100 26 C -0.123 4.123 27 C -0.114 4.114 28 C -0.131 4.131 29 C -0.087 4.087 30 H 0.076 0.924 31 H 0.048 0.952 32 H 0.059 0.941 33 H 0.054 0.946 34 H 0.084 0.916 35 H 0.409 0.591 36 H 0.079 0.921 37 H 0.059 0.941 38 H 0.065 0.935 39 H 0.060 0.940 40 H 0.056 0.944 41 H 0.037 0.963 42 H 0.364 0.636 43 H 0.256 0.744 44 H 0.063 0.937 45 H 0.085 0.915 46 H 0.060 0.940 47 H 0.092 0.908 48 H 0.071 0.929 49 H 0.037 0.963 50 H 0.077 0.923 51 H 0.060 0.940 52 H 0.070 0.930 53 H 0.064 0.936 54 H 0.092 0.908 55 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.461 22.812 0.440 24.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.325 6.325 3 C -0.006 4.006 4 C -0.074 4.074 5 C 0.315 3.685 6 O -0.455 6.455 7 N -0.358 5.358 8 C 0.049 3.951 9 H 0.098 0.902 10 C -0.156 4.156 11 C -0.143 4.143 12 C -0.166 4.166 13 C 0.075 3.925 14 H 0.061 0.939 15 N -0.395 5.395 16 C -0.351 4.351 17 H 0.076 0.924 18 C -0.255 4.255 19 N -0.636 5.636 20 Si 0.778 3.222 21 H -0.208 1.208 22 H -0.226 1.226 23 H -0.177 1.177 24 C -0.165 4.165 25 C -0.138 4.138 26 C -0.161 4.161 27 C -0.151 4.151 28 C -0.168 4.168 29 C -0.124 4.124 30 H 0.095 0.905 31 H 0.067 0.933 32 H 0.078 0.922 33 H 0.072 0.928 34 H 0.102 0.898 35 H 0.249 0.751 36 H 0.098 0.902 37 H 0.077 0.923 38 H 0.084 0.916 39 H 0.079 0.921 40 H 0.075 0.925 41 H 0.056 0.944 42 H 0.197 0.803 43 H 0.064 0.936 44 H 0.082 0.918 45 H 0.104 0.896 46 H 0.079 0.921 47 H 0.110 0.890 48 H 0.090 0.910 49 H 0.056 0.944 50 H 0.096 0.904 51 H 0.079 0.921 52 H 0.088 0.912 53 H 0.082 0.918 54 H 0.110 0.890 55 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 7.906 22.991 0.860 24.328 hybrid contribution -0.240 -1.440 0.087 1.463 sum 7.666 21.551 0.947 22.894 Atomic orbital electron populations 1.22798 0.79535 1.02986 1.00993 1.87739 1.21140 1.28114 1.95530 1.22593 0.90712 0.85162 1.02088 1.20969 0.95014 0.97636 0.93816 1.20668 0.79163 0.81656 0.87030 1.90576 1.37927 1.68449 1.48511 1.46334 1.49850 1.14452 1.25195 1.20813 0.98480 0.90175 0.85629 0.90182 1.21815 0.95155 1.00969 0.97708 1.21398 0.96519 0.94960 1.01400 1.22050 0.99587 0.95913 0.99028 1.20293 0.93694 0.82930 0.95565 0.93925 1.42825 1.32794 1.04139 1.59712 1.19003 1.04059 0.91579 1.20453 0.92366 1.25417 1.00571 0.98362 1.01139 1.69872 1.36563 1.12645 1.44509 0.85480 0.80375 0.78701 0.77657 1.20780 1.22628 1.17676 1.22031 0.96895 0.94861 1.02678 1.21524 0.95768 1.00353 0.96166 1.21569 0.95264 0.97929 1.01316 1.21522 0.99981 0.95111 0.98500 1.21715 0.95285 1.00849 0.98948 1.21301 0.95751 0.92492 1.02883 0.90509 0.93292 0.92238 0.92813 0.89807 0.75116 0.90226 0.92270 0.91586 0.92150 0.92525 0.94370 0.80331 0.93556 0.91836 0.89632 0.92104 0.88964 0.90989 0.94415 0.90443 0.92111 0.91166 0.91796 0.88957 0.91978 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.63 11.01 113.37 1.25 1.88 16 2 O -0.41 -9.06 7.53 -148.98 -1.12 -10.18 16 3 C 0.07 1.28 4.79 71.98 0.35 1.62 16 4 C -0.07 -1.43 0.52 -52.93 -0.03 -1.46 16 5 C 0.53 13.84 4.93 87.65 0.43 14.28 16 6 O -0.57 -17.85 13.33 -3.04 -0.04 -17.89 16 7 N -0.71 -18.89 3.77 -442.53 -1.67 -20.56 16 8 C 0.15 4.16 2.78 44.99 0.13 4.28 16 9 H 0.08 2.23 7.58 -2.39 -0.02 2.21 16 10 C -0.12 -2.97 5.60 30.59 0.17 -2.80 16 11 C -0.10 -2.80 5.77 30.60 0.18 -2.62 16 12 C -0.13 -4.18 5.50 30.60 0.17 -4.01 16 13 C 0.18 6.63 2.60 44.99 0.12 6.75 16 14 H 0.04 1.66 6.45 -2.39 -0.02 1.65 16 15 N -0.75 -34.13 4.92 -322.93 -1.59 -35.72 16 16 C -0.22 -12.25 10.41 84.03 0.87 -11.37 16 17 H 0.06 3.55 8.06 -2.91 -0.02 3.53 16 18 C -0.06 -3.72 5.50 84.86 0.47 -3.25 16 19 N -0.98 -62.68 13.97 21.65 0.30 -62.38 16 20 Si 0.95 45.34 27.74 68.60 1.90 47.25 16 21 H -0.28 -13.19 7.11 99.48 0.71 -12.48 16 22 H -0.30 -14.58 7.11 99.48 0.71 -13.87 16 23 H -0.25 -10.85 6.52 99.48 0.65 -10.20 16 24 C -0.13 -3.74 5.07 30.60 0.16 -3.58 16 25 C -0.10 -1.95 4.49 30.59 0.14 -1.81 16 26 C -0.12 -2.47 5.70 30.60 0.17 -2.30 16 27 C -0.11 -1.93 5.92 30.59 0.18 -1.75 16 28 C -0.13 -2.51 5.63 30.59 0.17 -2.33 16 29 C -0.09 -1.50 4.37 30.59 0.13 -1.37 16 30 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 31 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 32 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 33 H 0.05 0.95 8.14 -2.39 -0.02 0.94 16 34 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 35 H 0.41 11.63 4.25 -92.71 -0.39 11.24 16 36 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 37 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 38 H 0.07 1.60 8.14 -2.38 -0.02 1.58 16 39 H 0.06 1.67 7.60 -2.39 -0.02 1.65 16 40 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 41 H 0.04 1.45 8.14 -2.39 -0.02 1.44 16 42 H 0.36 15.96 5.66 -92.71 -0.52 15.43 16 43 H 0.26 15.59 8.31 -92.71 -0.77 14.82 16 44 H 0.06 1.96 8.14 -2.38 -0.02 1.94 16 45 H 0.09 2.34 8.14 -2.39 -0.02 2.32 16 46 H 0.06 1.41 7.10 -2.39 -0.02 1.39 16 47 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 48 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 49 H 0.04 0.93 7.22 -2.38 -0.02 0.92 16 50 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 51 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 52 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 53 H 0.06 1.65 5.51 -2.38 -0.01 1.64 16 54 H 0.09 1.13 8.14 -2.39 -0.02 1.12 16 55 H 0.06 1.16 8.10 -2.39 -0.02 1.15 16 Total: -1.00 -68.18 404.99 2.72 -65.46 By element: Atomic # 1 Polarization: 43.99 SS G_CDS: -0.12 Total: 43.87 kcal Atomic # 6 Polarization: -14.90 SS G_CDS: 5.05 Total: -9.85 kcal Atomic # 7 Polarization: -115.70 SS G_CDS: -2.96 Total: -118.66 kcal Atomic # 8 Polarization: -26.91 SS G_CDS: -1.16 Total: -28.07 kcal Atomic # 14 Polarization: 45.34 SS G_CDS: 1.90 Total: 47.25 kcal Total: -68.18 2.72 -65.46 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567168743.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.231 kcal (2) G-P(sol) polarization free energy of solvation -68.180 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.411 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.718 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.462 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds