Wall clock time and date at job start Tue Mar 31 2020 23:00:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42901 * 114.00041 * 2 1 4 4 H 1.08996 * 109.46809 * 5.72299 * 3 2 1 5 5 C 1.50697 * 109.46815 * 125.72209 * 3 2 1 6 6 O 1.21282 * 120.00272 * 3.09610 * 5 3 2 7 7 N 1.34782 * 119.99747 * 183.08962 * 5 3 2 8 8 C 1.46499 * 119.99750 * 184.76720 * 7 5 3 9 9 C 1.53001 * 109.46918 * 180.02562 * 8 7 5 10 10 C 1.53002 * 109.46955 * 179.97438 * 9 8 7 11 11 H 1.08999 * 110.88692 * 54.30004 * 10 9 8 12 12 C 1.55160 * 111.00084 * 178.17605 * 10 9 8 13 13 C 1.54321 * 102.93978 * 153.57643 * 12 10 9 14 14 N 1.47027 * 107.27374 * 337.80727 * 13 12 10 15 15 C 1.36937 * 125.64976 * 178.97487 * 14 13 12 16 16 H 1.07996 * 120.00001 * 179.97438 * 15 14 13 17 17 C 1.38807 * 120.00045 * 359.97438 * 15 14 13 18 18 N 1.31624 * 120.00219 * 359.97438 * 17 15 14 19 19 Si 1.86798 * 120.00263 * 180.02562 * 17 15 14 20 20 H 1.48508 * 109.46911 * 359.97438 * 19 17 15 21 21 H 1.48502 * 109.47318 * 119.99296 * 19 17 15 22 22 H 1.48499 * 109.47581 * 239.99838 * 19 17 15 23 23 C 1.47462 * 108.72004 * 358.97552 * 14 13 12 24 24 C 1.52999 * 109.47156 * 245.72386 * 3 2 1 25 25 C 1.53004 * 109.47058 * 62.81215 * 24 3 2 26 26 C 1.53002 * 109.46850 * 179.97438 * 25 24 3 27 27 C 1.53008 * 109.46809 * 60.00396 * 26 25 24 28 28 C 1.53000 * 109.47252 * 299.99773 * 27 26 25 29 29 C 1.52999 * 109.46932 * 59.99825 * 28 27 26 30 30 H 1.08999 * 109.46995 * 304.48706 * 1 2 3 31 31 H 1.08994 * 109.47454 * 64.48879 * 1 2 3 32 32 H 1.09000 * 109.47310 * 184.49220 * 1 2 3 33 33 H 0.96996 * 120.00247 * 4.76420 * 7 5 3 34 34 H 1.09008 * 109.46684 * 299.99640 * 8 7 5 35 35 H 1.08998 * 109.47540 * 60.00106 * 8 7 5 36 36 H 1.09000 * 109.47140 * 299.99775 * 9 8 7 37 37 H 1.08998 * 109.47201 * 59.99565 * 9 8 7 38 38 H 1.08995 * 110.72120 * 271.93648 * 12 10 9 39 39 H 1.09001 * 110.72300 * 35.03997 * 12 10 9 40 40 H 1.09007 * 109.88499 * 97.22612 * 13 12 10 41 41 H 1.09004 * 109.88152 * 218.23366 * 13 12 10 42 42 H 0.97000 * 120.00433 * 179.97438 * 18 17 15 43 43 H 1.09004 * 110.35181 * 265.25656 * 23 14 13 44 44 H 1.08996 * 110.40836 * 142.91882 * 23 14 13 45 45 H 1.09000 * 109.47041 * 182.81808 * 24 3 2 46 46 H 1.08991 * 109.47179 * 299.99902 * 25 24 3 47 47 H 1.08998 * 109.46804 * 60.00496 * 25 24 3 48 48 H 1.09000 * 109.47395 * 300.00682 * 26 25 24 49 49 H 1.08998 * 109.46949 * 179.97438 * 26 25 24 50 50 H 1.08997 * 109.47029 * 179.97438 * 27 26 25 51 51 H 1.09000 * 109.46909 * 59.99988 * 27 26 25 52 52 H 1.09001 * 109.46890 * 300.00237 * 28 27 26 53 53 H 1.08995 * 109.47249 * 180.02562 * 28 27 26 54 54 H 1.09002 * 109.46969 * 179.97438 * 29 28 27 55 55 H 1.09001 * 109.46996 * 60.00477 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 1 1.2239 2.0532 0.1025 5 6 2.9724 1.4269 1.1535 6 8 3.1859 0.4707 1.8684 7 7 3.5957 2.5981 1.3906 8 6 4.6082 2.6885 2.4456 9 6 5.1550 4.1162 2.5066 10 6 6.2120 4.2108 3.6088 11 1 6.9878 3.4580 3.4689 12 6 6.8241 5.6352 3.6715 13 6 7.2808 5.7506 5.1410 14 7 6.4982 4.7791 5.9191 15 6 6.6163 4.5537 7.2646 16 1 5.9921 3.8149 7.7452 17 6 7.5383 5.2746 8.0108 18 7 8.2995 6.1746 7.4250 19 14 7.7000 4.9667 9.8461 20 1 6.7384 3.9124 10.2577 21 1 9.0834 4.5228 10.1536 22 1 7.4063 6.2201 10.5862 23 6 5.5649 4.0873 5.0108 24 6 2.7595 1.5302 -1.3149 25 6 1.7704 1.4764 -2.4811 26 6 2.5196 1.7017 -3.7960 27 6 3.5774 0.6105 -3.9736 28 6 4.5664 0.6642 -2.8075 29 6 3.8172 0.4390 -1.4926 30 1 -0.3633 0.5819 0.8471 31 1 -0.3634 0.4426 -0.9274 32 1 -0.3634 -1.0245 0.0805 33 1 3.3740 3.3811 0.8629 34 1 4.1579 2.4310 3.4043 35 1 5.4219 1.9964 2.2286 36 1 5.6051 4.3742 1.5480 37 1 4.3412 4.8080 2.7238 38 1 7.6749 5.7194 2.9955 39 1 6.0719 6.3888 3.4383 40 1 8.3430 5.5181 5.2185 41 1 7.0946 6.7597 5.5089 42 1 8.9436 6.6788 7.9465 43 1 4.5910 4.5767 5.0234 44 1 5.4672 3.0390 5.2926 45 1 3.2446 2.5060 -1.2945 46 1 1.2855 0.5005 -2.5014 47 1 1.0172 2.2540 -2.3547 48 1 3.0044 2.6778 -3.7753 49 1 1.8151 1.6630 -4.6267 50 1 4.1108 0.7708 -4.9106 51 1 3.0926 -0.3655 -3.9943 52 1 5.0511 1.6403 -2.7869 53 1 5.3202 -0.1128 -2.9343 54 1 4.5219 0.4768 -0.6619 55 1 3.3325 -0.5371 -1.5133 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001567715858.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:00:46 Heat of formation + Delta-G solvation = -111.130299 kcal Electronic energy + Delta-G solvation = -30265.405905 eV Core-core repulsion = 26300.769248 eV Total energy + Delta-G solvation = -3964.636657 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.40518 -39.64614 -39.15923 -37.95624 -36.40460 -34.77995 -33.19674 -32.21125 -31.61782 -30.70255 -28.80429 -27.97306 -26.91638 -26.07416 -23.78399 -23.43553 -22.80059 -21.84429 -21.52398 -20.73653 -20.56872 -18.87412 -18.31192 -17.72671 -17.22981 -16.90009 -16.52598 -16.44642 -15.99449 -15.71934 -15.59047 -15.39584 -15.08985 -14.89057 -14.79604 -14.41746 -14.10928 -13.98244 -13.83341 -13.69177 -13.32009 -13.17729 -13.07680 -13.00763 -12.82781 -12.75450 -12.66087 -12.40826 -12.21933 -11.98904 -11.98523 -11.88394 -11.81222 -11.56574 -11.42698 -11.39350 -11.32478 -11.23924 -11.17977 -10.83234 -10.72373 -10.22920 -10.08742 -8.89520 -7.86606 -5.21726 1.43165 1.44344 1.54906 1.57718 1.98682 2.47966 2.97741 3.31056 3.58426 3.63134 3.68363 3.78887 3.83560 3.95228 3.98672 4.08169 4.16405 4.32905 4.34698 4.38018 4.39827 4.42712 4.54015 4.57976 4.61880 4.62343 4.68380 4.69053 4.70364 4.76236 4.77564 4.86352 4.91087 5.00744 5.04337 5.13360 5.17334 5.19468 5.26452 5.27485 5.32254 5.34038 5.40974 5.43922 5.44497 5.45737 5.53032 5.63519 5.71088 5.79398 6.09381 6.20315 6.60302 7.10419 7.27410 7.78245 8.42288 9.23853 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.020152 B = 0.002001 C = 0.001890 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1389.119175 B =13987.992569 C =14811.763304 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.382 6.382 3 C 0.079 3.921 4 H 0.119 0.881 5 C 0.497 3.503 6 O -0.579 6.579 7 N -0.711 5.711 8 C 0.124 3.876 9 C -0.097 4.097 10 C -0.086 4.086 11 H 0.070 0.930 12 C -0.121 4.121 13 C 0.180 3.820 14 N -0.632 5.632 15 C -0.243 4.243 16 H 0.078 0.922 17 C -0.069 4.069 18 N -0.951 5.951 19 Si 0.978 3.022 20 H -0.268 1.268 21 H -0.291 1.291 22 H -0.289 1.289 23 C 0.133 3.867 24 C -0.085 4.085 25 C -0.109 4.109 26 C -0.115 4.115 27 C -0.120 4.120 28 C -0.117 4.117 29 C -0.108 4.108 30 H 0.045 0.955 31 H 0.068 0.932 32 H 0.091 0.909 33 H 0.418 0.582 34 H 0.046 0.954 35 H 0.054 0.946 36 H 0.099 0.901 37 H 0.083 0.917 38 H 0.082 0.918 39 H 0.078 0.922 40 H 0.006 0.994 41 H 0.004 0.996 42 H 0.247 0.753 43 H 0.026 0.974 44 H 0.029 0.971 45 H 0.102 0.898 46 H 0.060 0.940 47 H 0.082 0.918 48 H 0.071 0.929 49 H 0.072 0.928 50 H 0.068 0.932 51 H 0.054 0.946 52 H 0.068 0.932 53 H 0.054 0.946 54 H 0.034 0.966 55 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.368 -6.286 -28.668 33.605 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.300 6.300 3 C 0.018 3.982 4 H 0.136 0.864 5 C 0.284 3.716 6 O -0.457 6.457 7 N -0.365 5.365 8 C 0.000 4.000 9 C -0.135 4.135 10 C -0.106 4.106 11 H 0.088 0.912 12 C -0.159 4.159 13 C 0.055 3.945 14 N -0.358 5.358 15 C -0.372 4.372 16 H 0.095 0.905 17 C -0.262 4.262 18 N -0.600 5.600 19 Si 0.807 3.193 20 H -0.192 1.192 21 H -0.218 1.218 22 H -0.216 1.216 23 C 0.008 3.992 24 C -0.104 4.104 25 C -0.147 4.147 26 C -0.153 4.153 27 C -0.157 4.157 28 C -0.154 4.154 29 C -0.145 4.145 30 H 0.063 0.937 31 H 0.086 0.914 32 H 0.109 0.891 33 H 0.255 0.745 34 H 0.065 0.935 35 H 0.073 0.927 36 H 0.118 0.882 37 H 0.101 0.899 38 H 0.101 0.899 39 H 0.097 0.903 40 H 0.024 0.976 41 H 0.023 0.977 42 H 0.056 0.944 43 H 0.043 0.957 44 H 0.048 0.952 45 H 0.120 0.880 46 H 0.079 0.921 47 H 0.100 0.900 48 H 0.089 0.911 49 H 0.091 0.909 50 H 0.086 0.914 51 H 0.073 0.927 52 H 0.087 0.913 53 H 0.073 0.927 54 H 0.053 0.947 55 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -16.005 -7.092 -27.997 33.019 hybrid contribution 0.377 0.209 1.636 1.692 sum -15.628 -6.883 -26.361 31.408 Atomic orbital electron populations 1.23126 0.79304 1.03854 1.01233 1.88005 1.21339 1.26034 1.94580 1.22214 0.95730 0.87702 0.92546 0.86387 1.21500 0.81780 0.82522 0.85784 1.90712 1.64928 1.39820 1.50269 1.45848 1.40759 1.12286 1.37650 1.21253 0.90398 0.98070 0.90260 1.21582 0.98108 0.94613 0.99194 1.22155 0.97582 0.97274 0.93567 0.91201 1.22756 1.00906 0.96514 0.95744 1.20947 0.93422 0.91358 0.88738 1.44872 1.42703 1.43953 1.04303 1.19493 1.16606 1.17234 0.83864 0.90454 1.25670 0.98832 0.98991 1.02703 1.70204 1.26521 1.28033 1.35287 0.85007 0.77318 0.77320 0.79686 1.19229 1.21784 1.21635 1.21840 0.92443 0.94803 0.90100 1.21532 0.96335 1.00242 0.92267 1.21565 0.97284 1.02591 0.93246 1.21514 0.97736 0.98978 0.97055 1.21542 0.97039 0.99335 0.97796 1.21519 0.97810 1.01952 0.94150 1.21406 0.96977 0.99002 0.97153 0.93674 0.91382 0.89075 0.74463 0.93534 0.92725 0.88216 0.89880 0.89921 0.90328 0.97555 0.97735 0.94402 0.95652 0.95246 0.87968 0.92085 0.89986 0.91071 0.90949 0.91368 0.92725 0.91299 0.92696 0.94716 0.92877 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.26 10.55 113.37 1.20 1.46 16 2 O -0.38 -7.84 8.54 -129.96 -1.11 -8.95 16 3 C 0.08 1.28 2.36 29.85 0.07 1.35 16 4 H 0.12 1.13 7.60 -2.39 -0.02 1.11 16 5 C 0.50 11.91 6.07 87.66 0.53 12.44 16 6 O -0.58 -20.69 16.51 15.99 0.26 -20.42 16 7 N -0.71 -13.15 5.42 -463.05 -2.51 -15.67 16 8 C 0.12 2.97 5.56 86.38 0.48 3.45 16 9 C -0.10 -2.03 4.84 30.60 0.15 -1.88 16 10 C -0.09 -2.72 3.04 -9.40 -0.03 -2.75 16 11 H 0.07 2.32 8.14 -2.39 -0.02 2.30 16 12 C -0.12 -4.16 6.42 31.78 0.20 -3.95 16 13 C 0.18 9.07 5.37 86.73 0.47 9.53 16 14 N -0.63 -33.77 3.40 -691.88 -2.35 -36.12 16 15 C -0.24 -14.26 10.28 84.03 0.86 -13.40 16 16 H 0.08 4.40 7.83 -2.91 -0.02 4.38 16 17 C -0.07 -4.09 5.49 84.86 0.47 -3.63 16 18 N -0.95 -58.92 10.31 21.65 0.22 -58.70 16 19 Si 0.98 47.43 29.55 68.60 2.03 49.46 16 20 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 21 H -0.29 -14.01 7.11 99.48 0.71 -13.31 16 22 H -0.29 -13.86 7.11 99.48 0.71 -13.16 16 23 C 0.13 5.52 6.04 86.85 0.52 6.05 16 24 C -0.08 -1.03 2.00 -10.79 -0.02 -1.05 16 25 C -0.11 -0.93 4.81 30.60 0.15 -0.79 16 26 C -0.12 -0.89 5.92 30.60 0.18 -0.71 16 27 C -0.12 -1.26 5.92 30.60 0.18 -1.08 16 28 C -0.12 -1.58 5.92 30.59 0.18 -1.40 16 29 C -0.11 -1.89 4.82 30.59 0.15 -1.74 16 30 H 0.04 0.54 8.12 -2.39 -0.02 0.52 16 31 H 0.07 0.51 7.51 -2.39 -0.02 0.50 16 32 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 33 H 0.42 4.30 8.23 -92.71 -0.76 3.54 16 34 H 0.05 1.37 7.59 -2.38 -0.02 1.35 16 35 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 36 H 0.10 1.53 8.14 -2.39 -0.02 1.51 16 37 H 0.08 1.59 8.03 -2.39 -0.02 1.57 16 38 H 0.08 2.47 8.14 -2.39 -0.02 2.45 16 39 H 0.08 2.38 8.04 -2.39 -0.02 2.36 16 40 H 0.01 0.35 7.38 -2.38 -0.02 0.33 16 41 H 0.00 0.25 7.51 -2.38 -0.02 0.23 16 42 H 0.25 14.76 8.31 -92.71 -0.77 13.99 16 43 H 0.03 1.03 7.96 -2.39 -0.02 1.01 16 44 H 0.03 1.25 8.10 -2.39 -0.02 1.23 16 45 H 0.10 0.86 7.81 -2.39 -0.02 0.84 16 46 H 0.06 0.66 7.23 -2.39 -0.02 0.64 16 47 H 0.08 0.39 8.14 -2.39 -0.02 0.38 16 48 H 0.07 0.47 8.14 -2.39 -0.02 0.45 16 49 H 0.07 0.45 8.14 -2.39 -0.02 0.43 16 50 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 51 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 52 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 53 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 54 H 0.03 0.78 7.31 -2.39 -0.02 0.76 16 55 H 0.05 1.13 7.61 -2.39 -0.02 1.11 16 Total: -1.00 -80.60 420.32 2.36 -78.25 By element: Atomic # 1 Polarization: 10.17 SS G_CDS: 0.07 Total: 10.25 kcal Atomic # 6 Polarization: -3.83 SS G_CDS: 5.74 Total: 1.90 kcal Atomic # 7 Polarization: -105.85 SS G_CDS: -4.64 Total: -110.49 kcal Atomic # 8 Polarization: -28.53 SS G_CDS: -0.85 Total: -29.37 kcal Atomic # 14 Polarization: 47.43 SS G_CDS: 2.03 Total: 49.46 kcal Total: -80.60 2.36 -78.25 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567715858.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.881 kcal (2) G-P(sol) polarization free energy of solvation -80.604 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.485 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.355 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.249 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.130 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds