Wall clock time and date at job start Tue Mar 31 2020 23:00:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42894 * 113.99872 * 2 1 4 4 H 1.08996 * 109.47561 * 30.00314 * 3 2 1 5 5 C 1.50698 * 109.47605 * 269.99832 * 3 2 1 6 6 O 1.21285 * 119.99830 * 355.00738 * 5 3 2 7 7 N 1.34777 * 120.00647 * 175.00003 * 5 3 2 8 8 C 1.46494 * 120.00379 * 180.02562 * 7 5 3 9 9 C 1.53000 * 109.47091 * 180.02562 * 8 7 5 10 10 C 1.52998 * 109.47210 * 180.02562 * 9 8 7 11 11 H 1.08996 * 110.88793 * 305.70494 * 10 9 8 12 12 C 1.55155 * 111.00607 * 181.81656 * 10 9 8 13 13 C 1.54371 * 102.92269 * 206.45379 * 12 10 9 14 14 N 1.47015 * 107.28826 * 22.13801 * 13 12 10 15 15 C 1.36937 * 125.64984 * 181.05585 * 14 13 12 16 16 H 1.07999 * 120.00415 * 173.98413 * 15 14 13 17 17 C 1.38813 * 119.99786 * 353.98140 * 15 14 13 18 18 N 1.31617 * 119.99964 * 6.85353 * 17 15 14 19 19 Si 1.86806 * 119.99897 * 186.84651 * 17 15 14 20 20 H 1.48495 * 109.46850 * 94.98887 * 19 17 15 21 21 H 1.48500 * 109.46772 * 214.98751 * 19 17 15 22 22 H 1.48498 * 109.46928 * 334.98883 * 19 17 15 23 23 C 1.47422 * 108.70228 * 1.09669 * 14 13 12 24 24 C 1.53004 * 109.47026 * 149.99965 * 3 2 1 25 25 C 1.53005 * 109.46844 * 60.00068 * 24 3 2 26 26 C 1.53004 * 109.46844 * 179.97438 * 25 24 3 27 27 C 1.52998 * 109.47141 * 60.00263 * 26 25 24 28 28 C 1.53005 * 109.47037 * 299.99619 * 27 26 25 29 29 C 1.52998 * 109.47141 * 300.00331 * 24 3 2 30 30 H 1.08997 * 109.47271 * 299.99941 * 1 2 3 31 31 H 1.09002 * 109.47052 * 59.99676 * 1 2 3 32 32 H 1.08998 * 109.47080 * 179.97438 * 1 2 3 33 33 H 0.97003 * 119.99088 * 0.02562 * 7 5 3 34 34 H 1.08997 * 109.47263 * 300.00021 * 8 7 5 35 35 H 1.08997 * 109.47102 * 60.00076 * 8 7 5 36 36 H 1.09007 * 109.46962 * 300.00070 * 9 8 7 37 37 H 1.08997 * 109.47201 * 59.99996 * 9 8 7 38 38 H 1.08997 * 110.72460 * 324.79172 * 12 10 9 39 39 H 1.09006 * 110.71546 * 88.06353 * 12 10 9 40 40 H 1.09006 * 109.84622 * 262.73278 * 13 12 10 41 41 H 1.09000 * 110.02799 * 141.65465 * 13 12 10 42 42 H 0.97008 * 119.99948 * 179.97438 * 18 17 15 43 43 H 1.09008 * 110.36674 * 217.03048 * 23 14 13 44 44 H 1.08997 * 110.46310 * 94.75447 * 23 14 13 45 45 H 1.09001 * 109.47376 * 180.02562 * 24 3 2 46 46 H 1.09001 * 109.47234 * 300.00210 * 25 24 3 47 47 H 1.09006 * 109.46778 * 60.00281 * 25 24 3 48 48 H 1.08996 * 109.46957 * 299.99939 * 26 25 24 49 49 H 1.09005 * 109.46685 * 180.02562 * 26 25 24 50 50 H 1.08998 * 109.46891 * 179.97438 * 27 26 25 51 51 H 1.09001 * 109.47101 * 59.99690 * 27 26 25 52 52 H 1.08996 * 109.47294 * 300.00466 * 28 27 26 53 53 H 1.08998 * 109.46961 * 180.02562 * 28 27 26 54 54 H 1.08996 * 109.46907 * 299.99321 * 29 24 3 55 55 H 1.09001 * 109.47101 * 59.99690 * 29 24 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3450 1.9993 0.5138 5 6 2.2146 1.7644 -1.4208 6 8 1.9791 1.0107 -2.3413 7 7 2.6589 3.0125 -1.6685 8 6 2.8570 3.4588 -3.0497 9 6 3.3631 4.9027 -3.0515 10 6 3.5694 5.3691 -4.4939 11 1 4.2217 4.6833 -5.0345 12 6 4.1266 6.8165 -4.5362 13 6 3.6339 7.3363 -5.9037 14 7 2.4766 6.5167 -6.2914 15 6 1.7615 6.6440 -7.4523 16 1 0.9868 5.9302 -7.6904 17 6 2.0324 7.6906 -8.3230 18 7 3.0619 8.4805 -8.1026 19 14 0.9358 7.9779 -9.8079 20 1 -0.0958 8.9919 -9.4725 21 1 1.7586 8.4657 -10.9438 22 1 0.2731 6.7044 -10.1875 23 6 2.2128 5.5358 -5.2230 24 6 3.3589 1.2632 0.7213 25 6 4.2927 0.2892 -0.0001 26 6 5.6416 0.2475 0.7209 27 6 5.4347 -0.2182 2.1635 28 6 4.5009 0.7559 2.8848 29 6 3.1515 0.7972 2.1637 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0276 -0.0005 33 1 2.8475 3.6152 -0.9322 34 1 3.5904 2.8166 -3.5374 35 1 1.9110 3.4043 -3.5884 36 1 2.6300 5.5452 -2.5636 37 1 4.3092 4.9568 -2.5129 38 1 3.7111 7.4136 -3.7245 39 1 5.2158 6.8117 -4.4944 40 1 4.4258 7.2340 -6.6457 41 1 3.3367 8.3817 -5.8206 42 1 3.2513 9.2117 -8.7113 43 1 1.8929 4.5856 -5.6510 44 1 1.4568 5.9151 -4.5356 45 1 3.8021 2.2591 0.7217 46 1 3.8493 -0.7066 -0.0001 47 1 4.4405 0.6212 -1.0277 48 1 6.0847 1.2433 0.7205 49 1 6.3070 -0.4461 0.2067 50 1 6.3957 -0.2483 2.6769 51 1 4.9916 -1.2140 2.1638 52 1 4.9440 1.7517 2.8844 53 1 4.3539 0.4244 3.9127 54 1 2.4863 1.4911 2.6776 55 1 2.7081 -0.1985 2.1637 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001567715860.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:00:56 Heat of formation + Delta-G solvation = -112.309890 kcal Electronic energy + Delta-G solvation = -30266.741248 eV Core-core repulsion = 26302.053440 eV Total energy + Delta-G solvation = -3964.687808 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.43684 -39.61193 -39.11509 -38.00982 -36.39520 -34.78732 -33.25112 -32.25186 -31.59383 -30.70710 -28.69608 -27.91877 -27.01257 -26.11336 -23.79061 -23.44751 -22.79691 -21.84915 -21.52361 -20.74305 -20.52997 -18.88320 -18.39151 -17.75632 -17.21450 -16.91651 -16.52474 -16.46024 -15.93868 -15.67115 -15.62183 -15.41222 -15.08154 -14.89309 -14.80004 -14.40715 -14.10908 -14.06144 -13.82775 -13.70978 -13.33183 -13.15261 -13.08833 -12.98169 -12.83357 -12.78327 -12.66512 -12.32126 -12.21736 -12.01427 -11.96018 -11.94413 -11.80474 -11.68994 -11.44871 -11.40462 -11.32198 -11.30711 -11.08169 -10.88257 -10.70585 -10.23207 -10.09664 -8.89292 -7.88250 -5.22359 1.42895 1.44875 1.54013 1.57319 2.07629 2.47666 2.81984 3.29440 3.58245 3.64143 3.67708 3.78739 3.84923 3.93311 3.97855 4.12048 4.15406 4.32493 4.34391 4.37303 4.40484 4.43652 4.52168 4.54570 4.61184 4.62835 4.68133 4.69434 4.70759 4.75862 4.77088 4.83630 4.90323 4.99801 5.05207 5.12838 5.16645 5.20340 5.25519 5.29379 5.32852 5.35798 5.41489 5.44104 5.44312 5.46496 5.52074 5.65745 5.71293 5.77802 6.03110 6.19846 6.58598 7.09609 7.26065 7.77698 8.42343 9.22555 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.019890 B = 0.002015 C = 0.001891 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1407.432260 B =13894.281397 C =14802.301057 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.373 6.373 3 C 0.079 3.921 4 H 0.116 0.884 5 C 0.485 3.515 6 O -0.580 6.580 7 N -0.711 5.711 8 C 0.124 3.876 9 C -0.097 4.097 10 C -0.086 4.086 11 H 0.069 0.931 12 C -0.121 4.121 13 C 0.179 3.821 14 N -0.632 5.632 15 C -0.246 4.246 16 H 0.077 0.923 17 C -0.067 4.067 18 N -0.949 5.949 19 Si 0.977 3.023 20 H -0.285 1.285 21 H -0.293 1.293 22 H -0.270 1.270 23 C 0.134 3.866 24 C -0.072 4.072 25 C -0.109 4.109 26 C -0.116 4.116 27 C -0.120 4.120 28 C -0.116 4.116 29 C -0.107 4.107 30 H 0.069 0.931 31 H 0.026 0.974 32 H 0.096 0.904 33 H 0.417 0.583 34 H 0.053 0.947 35 H 0.047 0.953 36 H 0.083 0.917 37 H 0.099 0.901 38 H 0.078 0.922 39 H 0.082 0.918 40 H 0.002 0.998 41 H 0.008 0.992 42 H 0.247 0.753 43 H 0.028 0.972 44 H 0.026 0.974 45 H 0.107 0.893 46 H 0.051 0.949 47 H 0.036 0.964 48 H 0.070 0.930 49 H 0.055 0.945 50 H 0.068 0.932 51 H 0.053 0.947 52 H 0.072 0.928 53 H 0.071 0.929 54 H 0.080 0.920 55 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.560 -14.515 29.193 32.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.291 6.291 3 C 0.018 3.982 4 H 0.133 0.867 5 C 0.272 3.728 6 O -0.459 6.459 7 N -0.366 5.366 8 C 0.000 4.000 9 C -0.135 4.135 10 C -0.106 4.106 11 H 0.088 0.912 12 C -0.159 4.159 13 C 0.054 3.946 14 N -0.358 5.358 15 C -0.375 4.375 16 H 0.095 0.905 17 C -0.260 4.260 18 N -0.598 5.598 19 Si 0.805 3.195 20 H -0.212 1.212 21 H -0.219 1.219 22 H -0.195 1.195 23 C 0.009 3.991 24 C -0.090 4.090 25 C -0.147 4.147 26 C -0.154 4.154 27 C -0.158 4.158 28 C -0.153 4.153 29 C -0.144 4.144 30 H 0.087 0.913 31 H 0.045 0.955 32 H 0.114 0.886 33 H 0.255 0.745 34 H 0.071 0.929 35 H 0.065 0.935 36 H 0.101 0.899 37 H 0.117 0.883 38 H 0.097 0.903 39 H 0.101 0.899 40 H 0.020 0.980 41 H 0.026 0.974 42 H 0.056 0.944 43 H 0.047 0.953 44 H 0.044 0.956 45 H 0.125 0.875 46 H 0.070 0.930 47 H 0.055 0.945 48 H 0.089 0.911 49 H 0.074 0.926 50 H 0.087 0.913 51 H 0.072 0.928 52 H 0.091 0.909 53 H 0.090 0.910 54 H 0.098 0.902 55 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 2.478 -15.120 28.364 32.238 hybrid contribution -0.748 0.709 -1.621 1.921 sum 1.730 -14.412 26.743 30.428 Atomic orbital electron populations 1.22986 0.79873 1.03938 1.00355 1.87966 1.20971 1.25880 1.94236 1.22328 0.98516 0.87013 0.90371 0.86677 1.22013 0.76143 0.81621 0.93050 1.90711 1.52035 1.55191 1.47937 1.45935 1.67151 1.14218 1.09273 1.21243 1.00263 0.95716 0.82809 1.21583 1.03254 0.93501 0.95186 1.22157 0.96040 0.96516 0.95888 0.91246 1.22762 1.00815 0.95516 0.96803 1.20977 0.88090 0.93018 0.92484 1.44846 1.34062 1.38747 1.18146 1.19450 1.12993 1.08423 0.96614 0.90502 1.25685 0.99885 0.97968 1.02467 1.70206 1.29483 1.20613 1.39493 0.85074 0.77921 0.78055 0.78406 1.21191 1.21920 1.19461 1.21823 0.96121 0.91432 0.89748 1.21339 0.90885 1.01238 0.95565 1.21450 0.96013 0.99594 0.97665 1.21519 0.95938 1.01878 0.96061 1.21545 1.00010 0.99129 0.95067 1.21534 0.94785 1.00054 0.98965 1.21511 0.98040 1.02094 0.92768 0.91251 0.95526 0.88573 0.74506 0.92850 0.93496 0.89852 0.88288 0.90322 0.89898 0.97954 0.97372 0.94353 0.95331 0.95623 0.87468 0.93003 0.94511 0.91101 0.92638 0.91294 0.92818 0.90937 0.91043 0.90153 0.92202 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.39 10.81 113.37 1.23 1.62 16 2 O -0.37 -7.65 8.54 -129.99 -1.11 -8.76 16 3 C 0.08 1.27 2.26 29.85 0.07 1.34 16 4 H 0.12 1.14 7.79 -2.39 -0.02 1.12 16 5 C 0.48 11.34 5.87 87.66 0.51 11.85 16 6 O -0.58 -20.07 16.51 15.94 0.26 -19.80 16 7 N -0.71 -13.03 5.52 -463.08 -2.55 -15.59 16 8 C 0.12 2.94 5.55 86.38 0.48 3.42 16 9 C -0.10 -2.03 4.84 30.59 0.15 -1.89 16 10 C -0.09 -2.72 3.04 -9.40 -0.03 -2.75 16 11 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16 12 C -0.12 -4.14 6.42 31.80 0.20 -3.94 16 13 C 0.18 9.00 5.38 86.75 0.47 9.46 16 14 N -0.63 -33.67 3.39 -691.90 -2.35 -36.02 16 15 C -0.25 -14.40 10.26 84.03 0.86 -13.54 16 16 H 0.08 4.36 7.84 -2.91 -0.02 4.34 16 17 C -0.07 -3.95 5.48 84.86 0.47 -3.49 16 18 N -0.95 -58.65 10.36 21.65 0.22 -58.42 16 19 Si 0.98 47.20 29.56 68.60 2.03 49.23 16 20 H -0.29 -13.48 7.11 99.48 0.71 -12.78 16 21 H -0.29 -14.09 7.11 99.48 0.71 -13.38 16 22 H -0.27 -12.41 7.11 99.48 0.71 -11.71 16 23 C 0.13 5.53 6.04 86.86 0.52 6.05 16 24 C -0.07 -0.88 2.04 -10.79 -0.02 -0.90 16 25 C -0.11 -1.91 4.81 30.60 0.15 -1.76 16 26 C -0.12 -1.55 5.92 30.59 0.18 -1.37 16 27 C -0.12 -1.29 5.92 30.60 0.18 -1.11 16 28 C -0.12 -0.95 5.93 30.62 0.18 -0.77 16 29 C -0.11 -1.01 5.06 30.61 0.15 -0.86 16 30 H 0.07 0.69 8.08 -2.39 -0.02 0.67 16 31 H 0.03 0.51 8.14 -2.39 -0.02 0.49 16 32 H 0.10 1.33 8.14 -2.39 -0.02 1.31 16 33 H 0.42 4.29 8.26 -92.71 -0.77 3.52 16 34 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 35 H 0.05 1.36 7.59 -2.39 -0.02 1.34 16 36 H 0.08 1.59 8.03 -2.38 -0.02 1.57 16 37 H 0.10 1.53 8.14 -2.39 -0.02 1.51 16 38 H 0.08 2.38 8.04 -2.39 -0.02 2.36 16 39 H 0.08 2.47 8.14 -2.38 -0.02 2.45 16 40 H 0.00 0.12 7.54 -2.38 -0.02 0.11 16 41 H 0.01 0.45 7.36 -2.39 -0.02 0.44 16 42 H 0.25 14.77 8.31 -92.70 -0.77 14.00 16 43 H 0.03 1.21 8.10 -2.38 -0.02 1.19 16 44 H 0.03 1.03 7.95 -2.39 -0.02 1.01 16 45 H 0.11 0.86 7.92 -2.39 -0.02 0.84 16 46 H 0.05 1.12 7.68 -2.39 -0.02 1.10 16 47 H 0.04 0.81 7.22 -2.38 -0.02 0.79 16 48 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 49 H 0.05 0.80 8.14 -2.38 -0.02 0.78 16 50 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 51 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 52 H 0.07 0.48 8.14 -2.39 -0.02 0.46 16 53 H 0.07 0.49 8.14 -2.39 -0.02 0.47 16 54 H 0.08 0.49 8.14 -2.39 -0.02 0.47 16 55 H 0.06 0.76 7.68 -2.39 -0.02 0.74 16 Total: -1.00 -79.34 422.08 2.32 -77.01 By element: Atomic # 1 Polarization: 10.90 SS G_CDS: 0.07 Total: 10.97 kcal Atomic # 6 Polarization: -4.37 SS G_CDS: 5.75 Total: 1.38 kcal Atomic # 7 Polarization: -105.35 SS G_CDS: -4.68 Total: -110.03 kcal Atomic # 8 Polarization: -27.72 SS G_CDS: -0.85 Total: -28.56 kcal Atomic # 14 Polarization: 47.20 SS G_CDS: 2.03 Total: 49.23 kcal Total: -79.34 2.32 -77.01 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567715860.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.296 kcal (2) G-P(sol) polarization free energy of solvation -79.337 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.633 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.323 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.013 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.310 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds