Wall clock time and date at job start Tue Mar 31 2020 22:11:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42896 * 109.46868 * 2 1 4 4 C 1.42906 * 114.00130 * 184.39235 * 3 2 1 5 5 H 1.08998 * 109.46532 * 31.69297 * 4 3 2 6 6 C 1.50692 * 109.47443 * 151.69948 * 4 3 2 7 7 O 1.21280 * 119.99876 * 18.34680 * 6 4 3 8 8 N 1.34775 * 119.99942 * 198.35351 * 6 4 3 9 9 C 1.46500 * 120.00254 * 174.99182 * 8 6 4 10 10 H 1.08996 * 109.46932 * 324.99744 * 9 8 6 11 11 C 1.53005 * 109.47071 * 84.99353 * 9 8 6 12 12 C 1.52997 * 109.46901 * 180.02562 * 11 9 8 13 13 C 1.53002 * 109.47607 * 300.00421 * 12 11 9 14 14 H 1.09003 * 109.46524 * 300.00079 * 13 12 11 15 15 N 1.46494 * 109.47348 * 179.97438 * 13 12 11 16 16 C 1.36942 * 119.99855 * 84.99638 * 15 13 12 17 17 H 1.07999 * 120.00156 * 0.02562 * 16 15 13 18 18 C 1.38812 * 120.00025 * 179.97438 * 16 15 13 19 19 N 1.31618 * 120.00017 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 120.00140 * 180.02562 * 18 16 15 21 21 H 1.48496 * 109.46805 * 359.97438 * 20 18 16 22 22 H 1.48505 * 109.46641 * 240.00115 * 20 18 16 23 23 H 1.48497 * 109.47447 * 120.00014 * 20 18 16 24 24 C 1.52992 * 109.47081 * 59.99809 * 13 12 11 25 25 C 1.52997 * 109.47386 * 204.99544 * 9 8 6 26 26 C 1.52998 * 109.46800 * 271.70041 * 4 3 2 27 27 C 1.54261 * 110.03332 * 291.10184 * 26 4 3 28 28 C 1.54890 * 104.19869 * 217.10793 * 27 26 4 29 29 C 1.54888 * 102.74645 * 37.93971 * 28 27 26 30 30 C 1.53880 * 110.03351 * 173.93557 * 26 4 3 31 31 H 1.09002 * 109.47434 * 299.99572 * 1 2 3 32 32 H 1.08998 * 109.47464 * 60.00379 * 1 2 3 33 33 H 1.09005 * 109.47188 * 180.02562 * 1 2 3 34 34 H 1.09000 * 109.46958 * 240.00218 * 2 1 3 35 35 H 1.08997 * 109.46962 * 119.99781 * 2 1 3 36 36 H 0.97003 * 120.00181 * 354.98289 * 8 6 4 37 37 H 1.08999 * 109.47371 * 300.00070 * 11 9 8 38 38 H 1.08996 * 109.46923 * 60.00386 * 11 9 8 39 39 H 1.08999 * 109.47500 * 180.02562 * 12 11 9 40 40 H 1.09008 * 109.47486 * 60.00474 * 12 11 9 41 41 H 0.96992 * 120.00488 * 264.99658 * 15 13 12 42 42 H 0.97003 * 120.00005 * 0.02562 * 19 18 16 43 43 H 1.09009 * 109.47379 * 60.00278 * 24 13 12 44 44 H 1.09004 * 109.47345 * 180.02562 * 24 13 12 45 45 H 1.09005 * 109.46900 * 59.99828 * 25 9 8 46 46 H 1.08996 * 109.47248 * 300.00006 * 25 9 8 47 47 H 1.09001 * 110.01923 * 52.54526 * 26 4 3 48 48 H 1.09001 * 110.48666 * 335.78280 * 27 26 4 49 49 H 1.08999 * 110.48958 * 98.43136 * 27 26 4 50 50 H 1.08999 * 110.75482 * 279.62750 * 28 27 26 51 51 H 1.08997 * 110.75732 * 156.25284 * 28 27 26 52 52 H 1.09007 * 110.48793 * 203.37901 * 29 28 27 53 53 H 1.09002 * 110.48750 * 80.74190 * 29 28 27 54 54 H 1.09003 * 110.03236 * 238.57015 * 30 26 4 55 55 H 1.09000 * 110.02671 * 359.97438 * 30 26 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0062 1.3473 0.0000 4 6 3.4272 1.4615 -0.1000 5 1 3.8175 0.6329 -0.6910 6 6 3.7807 2.7653 -0.7677 7 8 2.9630 3.6592 -0.8236 8 7 5.0055 2.9379 -1.3030 9 6 5.3137 4.1614 -2.0476 10 1 4.4276 4.4887 -2.5914 11 6 5.7466 5.2571 -1.0713 12 6 6.0679 6.5350 -1.8489 13 6 7.2004 6.2582 -2.8397 14 1 8.0868 5.9310 -2.2961 15 7 7.5076 7.4816 -3.5846 16 6 8.3706 8.4053 -3.0581 17 1 8.8252 8.2316 -2.0939 18 6 8.6621 9.5644 -3.7641 19 7 8.1086 9.7758 -4.9394 20 14 9.8400 10.8241 -3.0463 21 1 10.3218 10.3533 -1.7229 22 1 9.1374 12.1222 -2.8837 23 1 10.9965 10.9983 -3.9613 24 6 6.7675 5.1625 -3.8158 25 6 6.4465 3.8841 -3.0379 26 6 4.0417 1.4228 1.3006 27 6 3.6753 2.7062 2.0741 28 6 4.9474 3.0306 2.8961 29 6 6.0900 2.6581 1.9189 30 6 5.5770 1.3921 1.2021 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 -0.3634 -1.0277 0.0005 34 1 1.8933 -0.5138 -0.8900 35 1 1.8933 -0.5138 0.8900 36 1 5.6830 2.2522 -1.1952 37 1 4.9396 5.4548 -0.3658 38 1 6.6327 4.9298 -0.5275 39 1 6.3767 7.3155 -1.1535 40 1 5.1815 6.8622 -2.3925 41 1 7.0997 7.6375 -4.4507 42 1 7.4967 9.1219 -5.3120 43 1 5.8810 5.4896 -4.3594 44 1 7.5745 4.9649 -4.5215 45 1 6.1380 3.1035 -3.7334 46 1 7.3325 3.5568 -2.4941 47 1 3.6847 0.5458 1.8406 48 1 3.4512 3.5179 1.3819 49 1 2.8292 2.5240 2.7367 50 1 4.9930 2.4167 3.7957 51 1 4.9847 4.0904 3.1480 52 1 7.0061 2.4407 2.4682 53 1 6.2558 3.4619 1.2017 54 1 5.9651 0.5007 1.6949 55 1 5.8842 1.4044 0.1563 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001568108124.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:11:27 Heat of formation + Delta-G solvation = -119.743729 kcal Electronic energy + Delta-G solvation = -31345.284474 eV Core-core repulsion = 27380.274310 eV Total energy + Delta-G solvation = -3965.010163 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.76758 -39.93524 -38.70228 -38.11260 -36.59488 -34.85770 -32.93415 -32.21875 -31.77552 -30.75442 -29.60417 -28.78086 -26.48260 -25.40553 -23.75507 -23.70852 -22.88446 -21.79008 -21.53217 -21.18102 -20.52116 -19.33832 -18.34115 -17.93673 -17.28971 -17.10749 -16.74266 -16.46867 -15.95422 -15.82675 -15.62250 -15.45105 -15.36685 -15.11676 -14.85944 -14.34884 -14.11317 -14.03967 -13.75226 -13.45954 -13.31567 -13.16446 -13.09718 -13.01720 -12.74103 -12.41696 -12.39141 -12.25975 -12.11942 -12.01118 -11.95149 -11.89210 -11.86743 -11.83530 -11.73725 -11.55298 -11.50741 -11.36856 -11.12106 -10.90738 -10.84454 -10.34888 -10.06444 -9.10944 -8.38650 -5.31877 1.56542 1.56713 1.68593 1.79908 1.82838 2.70737 2.86995 3.39979 3.49146 3.57316 3.64610 3.68003 3.74030 3.80355 3.85713 4.00463 4.14406 4.18971 4.27288 4.28404 4.31633 4.36475 4.43920 4.46673 4.50039 4.51692 4.56993 4.60630 4.67456 4.74904 4.75534 4.80228 4.86781 4.89187 4.97422 5.02097 5.03667 5.04136 5.07856 5.15586 5.19101 5.22718 5.25519 5.29656 5.36758 5.42473 5.46129 5.50096 5.53993 5.62442 6.12152 6.50245 6.58050 7.11163 7.25077 8.01648 8.13181 9.13622 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.018410 B = 0.002456 C = 0.002310 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1520.539164 B =11397.791742 C =12117.449248 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.047 3.953 3 O -0.389 6.389 4 C 0.082 3.918 5 H 0.114 0.886 6 C 0.517 3.483 7 O -0.570 6.570 8 N -0.706 5.706 9 C 0.155 3.845 10 H 0.060 0.940 11 C -0.107 4.107 12 C -0.122 4.122 13 C 0.179 3.821 14 H 0.047 0.953 15 N -0.752 5.752 16 C -0.323 4.323 17 H 0.065 0.935 18 C -0.110 4.110 19 N -0.979 5.979 20 Si 1.131 2.869 21 H -0.271 1.271 22 H -0.294 1.294 23 H -0.289 1.289 24 C -0.114 4.114 25 C -0.105 4.105 26 C -0.101 4.101 27 C -0.125 4.125 28 C -0.124 4.124 29 C -0.129 4.129 30 C -0.117 4.117 31 H 0.054 0.946 32 H 0.048 0.952 33 H 0.096 0.904 34 H 0.064 0.936 35 H 0.070 0.930 36 H 0.414 0.586 37 H 0.043 0.957 38 H 0.077 0.923 39 H 0.036 0.964 40 H 0.034 0.966 41 H 0.358 0.642 42 H 0.244 0.756 43 H 0.051 0.949 44 H 0.068 0.932 45 H 0.092 0.908 46 H 0.090 0.910 47 H 0.105 0.895 48 H 0.042 0.958 49 H 0.061 0.939 50 H 0.081 0.919 51 H 0.050 0.950 52 H 0.080 0.920 53 H 0.053 0.947 54 H 0.097 0.903 55 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.496 -29.500 14.491 33.711 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.029 4.029 3 O -0.308 6.308 4 C 0.021 3.979 5 H 0.131 0.869 6 C 0.304 3.696 7 O -0.449 6.449 8 N -0.362 5.362 9 C 0.050 3.950 10 H 0.078 0.922 11 C -0.146 4.146 12 C -0.163 4.163 13 C 0.071 3.929 14 H 0.065 0.935 15 N -0.393 5.393 16 C -0.455 4.455 17 H 0.083 0.917 18 C -0.300 4.300 19 N -0.627 5.627 20 Si 0.956 3.044 21 H -0.196 1.196 22 H -0.221 1.221 23 H -0.216 1.216 24 C -0.153 4.153 25 C -0.143 4.143 26 C -0.120 4.120 27 C -0.163 4.163 28 C -0.161 4.161 29 C -0.167 4.167 30 C -0.154 4.154 31 H 0.073 0.927 32 H 0.068 0.932 33 H 0.115 0.885 34 H 0.082 0.918 35 H 0.088 0.912 36 H 0.254 0.746 37 H 0.062 0.938 38 H 0.095 0.905 39 H 0.055 0.945 40 H 0.053 0.947 41 H 0.189 0.811 42 H 0.054 0.946 43 H 0.070 0.930 44 H 0.087 0.913 45 H 0.110 0.890 46 H 0.109 0.891 47 H 0.123 0.877 48 H 0.061 0.939 49 H 0.080 0.920 50 H 0.100 0.900 51 H 0.069 0.931 52 H 0.099 0.901 53 H 0.071 0.929 54 H 0.116 0.884 55 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -7.361 -27.332 14.411 31.764 hybrid contribution -0.982 -0.931 -0.217 1.370 sum -8.343 -28.263 14.194 32.709 Atomic orbital electron populations 1.21773 0.93494 1.03401 1.02235 1.22835 0.96047 0.82319 1.01669 1.88052 1.19562 1.28527 1.94649 1.22220 0.83459 0.95042 0.97209 0.86860 1.20856 0.81815 0.89522 0.77405 1.90718 1.50682 1.44974 1.58487 1.46143 1.13459 1.21559 1.54990 1.20807 0.98016 0.84203 0.91952 0.92219 1.21721 1.00750 0.94491 0.97685 1.22013 0.98915 0.96874 0.98489 1.20415 0.94744 0.85741 0.92014 0.93513 1.42713 1.54272 1.21076 1.21247 1.20412 1.20517 1.01186 1.03373 0.91659 1.27179 1.04906 1.01134 0.96826 1.70926 1.34109 1.38415 1.19278 0.82573 0.73756 0.73380 0.74695 1.19593 1.22136 1.21581 1.21663 1.00918 0.94743 0.97951 1.21663 0.97878 0.97181 0.97558 1.22236 0.96578 0.99679 0.93509 1.22429 0.98143 0.97075 0.98623 1.22495 0.94336 1.00714 0.98575 1.22407 0.98386 0.97639 0.98223 1.22308 0.92411 0.99341 1.01375 0.92668 0.93244 0.88550 0.91817 0.91202 0.74577 0.93785 0.90478 0.94488 0.94667 0.81075 0.94574 0.93020 0.91317 0.88960 0.89148 0.87667 0.93879 0.92002 0.89992 0.93093 0.90127 0.92854 0.88429 0.90882 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.91 10.28 71.98 0.74 -1.17 16 2 C 0.05 0.60 6.50 71.98 0.47 1.07 16 3 O -0.39 -8.37 9.47 -130.62 -1.24 -9.61 16 4 C 0.08 1.39 2.20 29.84 0.07 1.46 16 5 H 0.11 1.12 7.74 -2.39 -0.02 1.10 16 6 C 0.52 12.68 5.49 87.65 0.48 13.17 16 7 O -0.57 -20.57 15.30 15.33 0.23 -20.33 16 8 N -0.71 -13.66 4.72 -442.55 -2.09 -15.74 16 9 C 0.15 3.93 2.42 44.99 0.11 4.03 16 10 H 0.06 1.88 7.65 -2.39 -0.02 1.86 16 11 C -0.11 -3.21 5.49 30.59 0.17 -3.04 16 12 C -0.12 -4.69 5.50 30.59 0.17 -4.52 16 13 C 0.18 7.08 2.77 44.99 0.12 7.20 16 14 H 0.05 1.86 8.08 -2.39 -0.02 1.84 16 15 N -0.75 -38.71 5.12 -322.95 -1.65 -40.36 16 16 C -0.32 -18.51 9.93 84.03 0.83 -17.67 16 17 H 0.07 3.66 7.83 -2.91 -0.02 3.64 16 18 C -0.11 -6.52 5.50 84.86 0.47 -6.05 16 19 N -0.98 -62.77 13.70 21.65 0.30 -62.47 16 20 Si 1.13 53.36 29.92 68.60 2.05 55.41 16 21 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 22 H -0.29 -13.83 7.11 99.48 0.71 -13.12 16 23 H -0.29 -13.34 7.11 99.48 0.71 -12.63 16 24 C -0.11 -3.53 5.39 30.61 0.17 -3.36 16 25 C -0.10 -2.25 5.39 30.61 0.17 -2.09 16 26 C -0.10 -1.37 2.92 -10.07 -0.03 -1.40 16 27 C -0.13 -2.50 6.05 31.67 0.19 -2.31 16 28 C -0.12 -2.06 6.91 31.89 0.22 -1.84 16 29 C -0.13 -1.82 6.83 31.67 0.22 -1.60 16 30 C -0.12 -1.12 5.95 31.32 0.19 -0.93 16 31 H 0.05 0.78 8.14 -2.39 -0.02 0.77 16 32 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 33 H 0.10 0.69 8.14 -2.38 -0.02 0.67 16 34 H 0.06 0.61 7.98 -2.39 -0.02 0.59 16 35 H 0.07 0.60 7.72 -2.39 -0.02 0.58 16 36 H 0.41 4.91 6.02 -92.71 -0.56 4.36 16 37 H 0.04 1.47 8.10 -2.39 -0.02 1.45 16 38 H 0.08 2.03 7.76 -2.39 -0.02 2.01 16 39 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 40 H 0.03 1.46 8.14 -2.38 -0.02 1.44 16 41 H 0.36 19.35 6.63 -92.71 -0.61 18.74 16 42 H 0.24 15.60 6.77 -92.71 -0.63 14.98 16 43 H 0.05 1.69 8.14 -2.38 -0.02 1.67 16 44 H 0.07 2.13 8.14 -2.38 -0.02 2.11 16 45 H 0.09 1.57 8.14 -2.38 -0.02 1.55 16 46 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 47 H 0.11 1.03 7.71 -2.39 -0.02 1.02 16 48 H 0.04 1.21 5.66 -2.39 -0.01 1.19 16 49 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 50 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 51 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 52 H 0.08 0.92 8.14 -2.38 -0.02 0.90 16 53 H 0.05 0.96 7.76 -2.39 -0.02 0.94 16 54 H 0.10 0.52 8.14 -2.39 -0.02 0.50 16 55 H 0.07 0.54 4.82 -2.39 -0.01 0.52 16 Total: -1.00 -79.38 417.30 2.18 -77.20 By element: Atomic # 1 Polarization: 35.13 SS G_CDS: -0.17 Total: 34.96 kcal Atomic # 6 Polarization: -23.79 SS G_CDS: 4.74 Total: -19.05 kcal Atomic # 7 Polarization: -115.13 SS G_CDS: -3.44 Total: -118.58 kcal Atomic # 8 Polarization: -28.94 SS G_CDS: -1.00 Total: -29.94 kcal Atomic # 14 Polarization: 53.36 SS G_CDS: 2.05 Total: 55.41 kcal Total: -79.38 2.18 -77.20 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001568108124.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.546 kcal (2) G-P(sol) polarization free energy of solvation -79.377 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.923 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.180 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.198 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.744 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds