Wall clock time and date at job start Tue Mar 31 2020 22:11:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42898 * 109.47332 * 2 1 4 4 C 1.42900 * 114.00073 * 180.02562 * 3 2 1 5 5 H 1.09001 * 109.47579 * 29.99341 * 4 3 2 6 6 C 1.50700 * 109.46704 * 269.99361 * 4 3 2 7 7 O 1.21286 * 120.00351 * 354.99793 * 6 4 3 8 8 N 1.34776 * 120.00292 * 175.00272 * 6 4 3 9 9 C 1.46499 * 120.00401 * 179.97438 * 8 6 4 10 10 H 1.09000 * 109.46878 * 324.99553 * 9 8 6 11 11 C 1.53001 * 109.47056 * 84.99912 * 9 8 6 12 12 C 1.53000 * 109.46700 * 179.97438 * 11 9 8 13 13 C 1.52998 * 109.47171 * 299.99639 * 12 11 9 14 14 H 1.09000 * 109.47235 * 300.00001 * 13 12 11 15 15 N 1.46507 * 109.46602 * 180.02562 * 13 12 11 16 16 C 1.36935 * 119.99742 * 85.00573 * 15 13 12 17 17 H 1.07999 * 120.00083 * 359.97438 * 16 15 13 18 18 C 1.38817 * 119.99986 * 179.97438 * 16 15 13 19 19 N 1.31617 * 119.99464 * 0.27719 * 18 16 15 20 20 Si 1.86800 * 119.99902 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.47035 * 60.00419 * 20 18 16 22 22 H 1.48503 * 109.46845 * 179.97438 * 20 18 16 23 23 H 1.48503 * 109.47237 * 300.00175 * 20 18 16 24 24 C 1.53001 * 109.47014 * 60.00553 * 13 12 11 25 25 C 1.52998 * 109.46978 * 204.99651 * 9 8 6 26 26 C 1.52996 * 109.47207 * 149.99778 * 4 3 2 27 27 C 1.54263 * 110.03786 * 57.90106 * 26 4 3 28 28 C 1.54962 * 104.16426 * 217.13757 * 27 26 4 29 29 C 1.54889 * 102.77636 * 37.88730 * 28 27 26 30 30 C 1.53879 * 110.02905 * 300.68352 * 26 4 3 31 31 H 1.08999 * 109.47074 * 180.02562 * 1 2 3 32 32 H 1.08995 * 109.47543 * 300.00704 * 1 2 3 33 33 H 1.09005 * 109.46558 * 60.00854 * 1 2 3 34 34 H 1.08997 * 109.47758 * 239.98799 * 2 1 3 35 35 H 1.09005 * 109.46558 * 119.99146 * 2 1 3 36 36 H 0.97008 * 119.99519 * 359.97438 * 8 6 4 37 37 H 1.08998 * 109.46936 * 299.99978 * 11 9 8 38 38 H 1.08995 * 109.47159 * 59.99854 * 11 9 8 39 39 H 1.09005 * 109.46641 * 179.97438 * 12 11 9 40 40 H 1.09000 * 109.47317 * 60.00490 * 12 11 9 41 41 H 0.96999 * 120.00180 * 264.99500 * 15 13 12 42 42 H 0.97001 * 120.00638 * 359.71685 * 19 18 16 43 43 H 1.08995 * 109.47159 * 59.99863 * 24 13 12 44 44 H 1.08998 * 109.46936 * 179.97438 * 24 13 12 45 45 H 1.09005 * 109.47291 * 60.00138 * 25 9 8 46 46 H 1.09000 * 109.47695 * 300.00302 * 25 9 8 47 47 H 1.09003 * 110.02085 * 179.29638 * 26 4 3 48 48 H 1.09001 * 110.48552 * 335.78435 * 27 26 4 49 49 H 1.09004 * 110.48268 * 98.42837 * 27 26 4 50 50 H 1.08996 * 110.72184 * 279.57900 * 28 27 26 51 51 H 1.08995 * 110.76662 * 156.22132 * 28 27 26 52 52 H 1.09000 * 110.48967 * 203.40784 * 29 28 27 53 53 H 1.08998 * 110.48561 * 80.75995 * 29 28 27 54 54 H 1.09000 * 110.03378 * 238.56843 * 30 26 4 55 55 H 1.08996 * 110.03412 * 359.95723 * 30 26 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4309 1.4600 -0.0006 5 1 3.8632 0.6016 -0.5146 6 6 3.9322 1.4996 1.4201 7 8 3.1434 1.5290 2.3409 8 7 5.2570 1.5025 1.6674 9 6 5.7443 1.5416 3.0485 10 1 5.0733 2.1514 3.6534 11 6 5.7906 0.1204 3.6133 12 6 6.3002 0.1612 5.0554 13 6 7.7048 0.7670 5.0830 14 1 8.3755 0.1571 4.4778 15 7 8.1929 0.8055 6.4639 16 6 8.7996 -0.2957 7.0065 17 1 8.9179 -1.1927 6.4167 18 6 9.2625 -0.2592 8.3147 19 7 9.1133 0.8321 9.0352 20 14 10.0895 -1.7616 9.0551 21 1 11.2938 -2.1070 8.2580 22 1 10.4904 -1.4668 10.4543 23 1 9.1422 -2.9052 9.0416 24 6 7.6585 2.1882 4.5182 25 6 7.1489 2.1476 3.0767 26 6 3.8404 2.7457 -0.7218 27 6 3.1925 3.9660 -0.0357 28 6 2.8370 4.9155 -1.2076 29 6 2.3727 3.9356 -2.3137 30 6 3.3199 2.7264 -2.1698 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3634 0.5139 0.8899 33 1 -0.3633 0.5137 -0.8901 34 1 1.8934 -0.5140 -0.8898 35 1 1.8932 -0.5137 0.8901 36 1 5.8879 1.4788 0.9309 37 1 4.7900 -0.3113 3.5931 38 1 6.4616 -0.4893 3.0083 39 1 6.3327 -0.8512 5.4579 40 1 5.6294 0.7710 5.6606 41 1 8.0864 1.6110 6.9937 42 1 8.6836 1.6122 8.6508 43 1 6.9879 2.7980 5.1234 44 1 8.6592 2.6199 4.5383 45 1 7.1160 3.1601 2.6742 46 1 7.8200 1.5379 2.4717 47 1 4.9257 2.8470 -0.7166 48 1 2.2914 3.6683 0.5005 49 1 3.9006 4.4433 0.6417 50 1 3.7150 5.4747 -1.5308 51 1 2.0293 5.5911 -0.9263 52 1 2.4827 4.3912 -3.2978 53 1 1.3393 3.6327 -2.1457 54 1 4.1524 2.8192 -2.8672 55 1 2.7762 1.8008 -2.3588 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001568108125.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:11:31 Heat of formation + Delta-G solvation = -127.498971 kcal Electronic energy + Delta-G solvation = -30767.769401 eV Core-core repulsion = 26802.422945 eV Total energy + Delta-G solvation = -3965.346456 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.56428 -40.00386 -38.79822 -37.89239 -36.57145 -34.86457 -33.02826 -32.20496 -31.79750 -30.71143 -29.56631 -28.77694 -26.46570 -25.38510 -23.85454 -23.70574 -22.74734 -21.88186 -21.36551 -21.00735 -20.54355 -19.38289 -18.61407 -17.93084 -17.22919 -16.87564 -16.69798 -16.35453 -16.13384 -15.94157 -15.59249 -15.39770 -15.23886 -15.09948 -14.78838 -14.41535 -14.14078 -14.08279 -13.79803 -13.53236 -13.20756 -13.18919 -13.04821 -12.87614 -12.72352 -12.44353 -12.35440 -12.30054 -12.22746 -12.12314 -11.93810 -11.89220 -11.87337 -11.62184 -11.55582 -11.51923 -11.50206 -11.37331 -11.28989 -11.11819 -10.86934 -10.22775 -10.07424 -9.12328 -8.39190 -5.32650 1.56517 1.56563 1.66957 1.83089 2.00978 2.68027 2.71269 3.39154 3.50357 3.63807 3.65525 3.67894 3.78159 3.79010 3.89639 4.05163 4.14984 4.18304 4.27023 4.27373 4.27847 4.39045 4.43172 4.44815 4.49370 4.55387 4.61404 4.63226 4.70908 4.74915 4.76801 4.85720 4.87944 4.91120 5.00193 5.01604 5.03330 5.05351 5.11062 5.14468 5.16974 5.21770 5.28198 5.34668 5.41571 5.45362 5.48305 5.52826 5.55150 5.60782 6.08045 6.49209 6.58475 7.10207 7.26220 8.00611 8.12433 9.12806 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.020355 B = 0.002182 C = 0.002049 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1375.221735 B =12831.798006 C =13665.093112 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.050 3.950 3 O -0.367 6.367 4 C 0.083 3.917 5 H 0.113 0.887 6 C 0.487 3.513 7 O -0.576 6.576 8 N -0.707 5.707 9 C 0.154 3.846 10 H 0.058 0.942 11 C -0.110 4.110 12 C -0.122 4.122 13 C 0.178 3.822 14 H 0.047 0.953 15 N -0.752 5.752 16 C -0.326 4.326 17 H 0.066 0.934 18 C -0.109 4.109 19 N -0.977 5.977 20 Si 1.127 2.873 21 H -0.274 1.274 22 H -0.294 1.294 23 H -0.281 1.281 24 C -0.114 4.114 25 C -0.104 4.104 26 C -0.080 4.080 27 C -0.122 4.122 28 C -0.121 4.121 29 C -0.120 4.120 30 C -0.109 4.109 31 H 0.087 0.913 32 H 0.044 0.956 33 H 0.070 0.930 34 H 0.074 0.926 35 H 0.030 0.970 36 H 0.417 0.583 37 H 0.044 0.956 38 H 0.078 0.922 39 H 0.037 0.963 40 H 0.034 0.966 41 H 0.357 0.643 42 H 0.243 0.757 43 H 0.050 0.950 44 H 0.068 0.932 45 H 0.090 0.910 46 H 0.090 0.910 47 H 0.112 0.888 48 H 0.047 0.953 49 H 0.055 0.945 50 H 0.078 0.922 51 H 0.058 0.942 52 H 0.076 0.924 53 H 0.054 0.946 54 H 0.086 0.914 55 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.074 3.218 -31.419 33.813 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.027 4.027 3 O -0.284 6.284 4 C 0.021 3.979 5 H 0.131 0.869 6 C 0.274 3.726 7 O -0.455 6.455 8 N -0.361 5.361 9 C 0.049 3.951 10 H 0.076 0.924 11 C -0.149 4.149 12 C -0.163 4.163 13 C 0.070 3.930 14 H 0.065 0.935 15 N -0.393 5.393 16 C -0.458 4.458 17 H 0.084 0.916 18 C -0.300 4.300 19 N -0.626 5.626 20 Si 0.952 3.048 21 H -0.200 1.200 22 H -0.220 1.220 23 H -0.207 1.207 24 C -0.153 4.153 25 C -0.142 4.142 26 C -0.099 4.099 27 C -0.160 4.160 28 C -0.158 4.158 29 C -0.158 4.158 30 C -0.146 4.146 31 H 0.106 0.894 32 H 0.063 0.937 33 H 0.089 0.911 34 H 0.092 0.908 35 H 0.048 0.952 36 H 0.254 0.746 37 H 0.063 0.937 38 H 0.097 0.903 39 H 0.056 0.944 40 H 0.053 0.947 41 H 0.189 0.811 42 H 0.053 0.947 43 H 0.069 0.931 44 H 0.086 0.914 45 H 0.109 0.891 46 H 0.109 0.891 47 H 0.130 0.870 48 H 0.066 0.934 49 H 0.073 0.927 50 H 0.096 0.904 51 H 0.077 0.923 52 H 0.095 0.905 53 H 0.073 0.927 54 H 0.104 0.896 55 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -12.025 2.572 -29.565 32.020 hybrid contribution -0.719 0.619 -0.366 1.017 sum -12.744 3.191 -29.931 32.688 Atomic orbital electron populations 1.21705 0.92906 1.03189 1.02497 1.22707 0.96604 0.83150 1.00195 1.87998 1.18912 1.27337 1.94192 1.22221 0.83371 1.01914 0.90344 0.86915 1.22022 0.82527 0.75031 0.92991 1.90715 1.56535 1.50351 1.47853 1.45965 1.06819 1.74599 1.08695 1.20770 0.95834 0.95799 0.82677 0.92408 1.21743 1.00281 0.97344 0.95573 1.22008 0.98396 0.99988 0.95900 1.20421 0.92348 0.95602 0.84587 0.93458 1.42709 1.71103 1.13833 1.11682 1.20370 1.32925 0.93822 0.98642 0.91594 1.27208 1.02576 1.05801 0.94420 1.70986 1.48485 1.04034 1.39084 0.82642 0.75766 0.71277 0.75156 1.20007 1.21999 1.20693 1.21646 1.01228 0.96026 0.96424 1.21629 0.93971 1.02538 0.96052 1.21996 1.01445 0.90966 0.95496 1.22351 0.99952 0.95773 0.97907 1.22481 1.01119 0.97265 0.94977 1.22302 0.99067 0.95640 0.98752 1.22098 0.99531 0.98978 0.94005 0.89383 0.93707 0.91116 0.90758 0.95182 0.74553 0.93712 0.90305 0.94368 0.94706 0.81093 0.94664 0.93150 0.91373 0.89112 0.89100 0.87036 0.93365 0.92665 0.90371 0.92292 0.90515 0.92716 0.89557 0.91374 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.24 10.28 71.98 0.74 -1.50 16 2 C 0.05 0.86 6.46 71.98 0.46 1.33 16 3 O -0.37 -7.63 7.98 -129.99 -1.04 -8.67 16 4 C 0.08 1.36 2.05 29.85 0.06 1.42 16 5 H 0.11 1.18 7.79 -2.39 -0.02 1.16 16 6 C 0.49 11.49 6.48 87.66 0.57 12.05 16 7 O -0.58 -20.09 16.17 15.94 0.26 -19.83 16 8 N -0.71 -13.25 5.04 -442.53 -2.23 -15.48 16 9 C 0.15 3.88 2.45 44.99 0.11 3.99 16 10 H 0.06 1.84 7.58 -2.39 -0.02 1.82 16 11 C -0.11 -3.24 5.50 30.59 0.17 -3.07 16 12 C -0.12 -4.65 5.50 30.59 0.17 -4.49 16 13 C 0.18 7.06 2.77 44.99 0.12 7.18 16 14 H 0.05 1.88 8.08 -2.39 -0.02 1.86 16 15 N -0.75 -38.73 5.12 -322.93 -1.65 -40.38 16 16 C -0.33 -18.64 9.93 84.04 0.83 -17.80 16 17 H 0.07 3.66 7.83 -2.91 -0.02 3.64 16 18 C -0.11 -6.48 5.50 84.86 0.47 -6.01 16 19 N -0.98 -62.66 13.70 21.65 0.30 -62.36 16 20 Si 1.13 52.89 29.92 68.60 2.05 54.95 16 21 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 22 H -0.29 -14.13 7.11 99.48 0.71 -13.42 16 23 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 24 C -0.11 -3.56 5.39 30.58 0.16 -3.39 16 25 C -0.10 -2.24 5.39 30.58 0.16 -2.07 16 26 C -0.08 -1.00 2.79 -10.07 -0.03 -1.03 16 27 C -0.12 -2.14 5.65 31.69 0.18 -1.96 16 28 C -0.12 -1.62 6.91 31.91 0.22 -1.40 16 29 C -0.12 -1.38 6.83 31.67 0.22 -1.16 16 30 C -0.11 -1.04 6.22 31.32 0.19 -0.85 16 31 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 32 H 0.04 0.86 8.14 -2.39 -0.02 0.84 16 33 H 0.07 0.95 8.14 -2.38 -0.02 0.93 16 34 H 0.07 0.86 8.08 -2.39 -0.02 0.84 16 35 H 0.03 0.64 8.14 -2.38 -0.02 0.62 16 36 H 0.42 4.42 8.41 -92.70 -0.78 3.64 16 37 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 38 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 39 H 0.04 1.61 8.14 -2.38 -0.02 1.59 16 40 H 0.03 1.43 8.14 -2.39 -0.02 1.42 16 41 H 0.36 19.37 6.63 -92.71 -0.61 18.76 16 42 H 0.24 15.56 6.77 -92.71 -0.63 14.93 16 43 H 0.05 1.66 8.14 -2.39 -0.02 1.65 16 44 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 45 H 0.09 1.58 8.14 -2.38 -0.02 1.56 16 46 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 47 H 0.11 0.85 7.95 -2.39 -0.02 0.83 16 48 H 0.05 1.17 7.15 -2.39 -0.02 1.16 16 49 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 50 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 51 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 52 H 0.08 0.66 8.14 -2.39 -0.02 0.64 16 53 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 54 H 0.09 0.50 8.14 -2.39 -0.02 0.48 16 55 H 0.07 0.68 7.40 -2.39 -0.02 0.66 16 Total: -1.00 -78.27 425.56 2.10 -76.17 By element: Atomic # 1 Polarization: 34.78 SS G_CDS: -0.40 Total: 34.38 kcal Atomic # 6 Polarization: -23.59 SS G_CDS: 4.82 Total: -18.77 kcal Atomic # 7 Polarization: -114.63 SS G_CDS: -3.59 Total: -118.22 kcal Atomic # 8 Polarization: -27.72 SS G_CDS: -0.78 Total: -28.50 kcal Atomic # 14 Polarization: 52.89 SS G_CDS: 2.05 Total: 54.95 kcal Total: -78.27 2.10 -76.17 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001568108125.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.330 kcal (2) G-P(sol) polarization free energy of solvation -78.271 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.601 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.102 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.169 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.499 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds