Wall clock time and date at job start Tue Mar 31 2020 21:57:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 O 1.42892 * 109.47407 * 2 1 4 4 C 1.42899 * 114.00205 * 184.40959 * 3 2 1 5 5 H 1.09006 * 109.47134 * 34.18015 * 4 3 2 6 6 C 1.52993 * 109.47319 * 154.18313 * 4 3 2 7 7 C 1.50698 * 109.47410 * 294.99909 * 6 4 3 8 8 O 1.21281 * 119.99684 * 0.02562 * 7 6 4 9 9 N 1.34776 * 120.00710 * 179.97438 * 7 6 4 10 10 C 1.46883 * 120.46232 * 359.72733 * 9 7 6 11 11 C 1.52860 * 109.01757 * 235.48662 * 10 9 7 12 12 C 1.52669 * 109.17534 * 307.81985 * 11 10 9 13 13 C 1.53482 * 113.62177 * 188.99503 * 12 11 10 14 14 N 1.47674 * 85.98838 * 137.70284 * 13 12 11 15 15 C 1.36933 * 134.45923 * 155.71080 * 14 13 12 16 16 H 1.08000 * 120.00382 * 179.97438 * 15 14 13 17 17 C 1.38819 * 119.99981 * 359.95787 * 15 14 13 18 18 N 1.31616 * 119.99572 * 359.97438 * 17 15 14 19 19 Si 1.86801 * 120.00038 * 179.97438 * 17 15 14 20 20 H 1.48503 * 109.46884 * 89.99742 * 19 17 15 21 21 H 1.48497 * 109.46840 * 209.99967 * 19 17 15 22 22 H 1.48506 * 109.47023 * 329.99924 * 19 17 15 23 23 C 1.47663 * 91.08515 * 335.68186 * 14 13 12 24 24 C 1.52667 * 113.18904 * 57.46007 * 12 11 10 25 25 C 1.46880 * 120.47077 * 180.02562 * 9 7 6 26 26 C 1.53005 * 109.47298 * 274.18560 * 4 3 2 27 27 C 1.52999 * 109.47408 * 175.91586 * 26 4 3 28 28 C 1.53004 * 109.46746 * 295.91643 * 26 4 3 29 29 H 1.08998 * 109.47945 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47180 * 300.00019 * 1 2 3 31 31 H 1.09006 * 109.47236 * 59.99608 * 1 2 3 32 32 H 1.09006 * 109.47009 * 239.99616 * 2 1 3 33 33 H 1.09003 * 109.46732 * 120.00340 * 2 1 3 34 34 H 1.09000 * 109.47328 * 55.00196 * 6 4 3 35 35 H 1.09008 * 109.47379 * 174.99839 * 6 4 3 36 36 H 1.09007 * 109.58601 * 355.30764 * 10 9 7 37 37 H 1.08993 * 109.59342 * 115.74720 * 10 9 7 38 38 H 1.09001 * 109.61522 * 187.83831 * 11 10 9 39 39 H 1.09002 * 109.38709 * 67.65780 * 11 10 9 40 40 H 1.09002 * 113.79368 * 251.96893 * 13 12 11 41 41 H 1.08995 * 113.79538 * 23.43805 * 13 12 11 42 42 H 0.96997 * 119.99583 * 180.02562 * 18 17 15 43 43 H 1.09006 * 113.79299 * 270.04666 * 23 14 13 44 44 H 1.08998 * 113.79486 * 138.58112 * 23 14 13 45 45 H 1.08999 * 109.53223 * 182.52011 * 24 12 11 46 46 H 1.09001 * 109.53273 * 62.29838 * 24 12 11 47 47 H 1.08993 * 109.59113 * 244.25880 * 25 9 7 48 48 H 1.09000 * 109.58677 * 4.69529 * 25 9 7 49 49 H 1.09000 * 109.47155 * 55.91194 * 26 4 3 50 50 H 1.09000 * 109.47171 * 65.98456 * 27 26 4 51 51 H 1.08999 * 109.47097 * 185.98646 * 27 26 4 52 52 H 1.08997 * 109.46678 * 305.98967 * 27 26 4 53 53 H 1.08991 * 109.47737 * 59.99600 * 28 26 4 54 54 H 1.09004 * 109.46847 * 180.02562 * 28 26 4 55 55 H 1.09000 * 109.46927 * 299.99691 * 28 26 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.4272 1.4613 -0.1004 5 1 3.8128 0.6579 -0.7281 6 6 3.7878 2.8120 -0.7219 7 6 3.2826 2.8630 -2.1407 8 8 2.6918 1.9127 -2.6086 9 7 3.4863 3.9650 -2.8895 10 6 4.1942 5.1244 -2.3310 11 6 3.3104 6.3635 -2.4728 12 6 2.8531 6.4897 -3.9240 13 6 2.1408 7.8141 -4.2313 14 7 2.9232 7.8245 -5.4837 15 6 2.7557 8.4009 -6.7144 16 1 3.4964 8.2515 -7.4861 17 6 1.6336 9.1771 -6.9704 18 7 0.7306 9.3585 -6.0303 19 14 1.4054 9.9640 -8.6492 20 1 0.6582 9.0345 -9.5341 21 1 0.6421 11.2294 -8.5030 22 1 2.7345 10.2536 -9.2449 23 6 3.9591 6.9648 -4.8767 24 6 2.1011 5.2598 -4.4265 25 6 2.9978 4.0259 -4.2734 26 6 4.0469 1.3602 1.2949 27 6 5.5723 1.3801 1.1783 28 6 3.5849 2.5455 2.1451 29 1 -0.3635 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 1.8933 -0.5139 -0.8900 33 1 1.8932 -0.5139 0.8900 34 1 3.3273 3.6127 -0.1432 35 1 4.8707 2.9367 -0.7171 36 1 4.4080 4.9488 -1.2766 37 1 5.1263 5.2799 -2.8741 38 1 3.8766 7.2511 -2.1906 39 1 2.4402 6.2634 -1.8240 40 1 1.0667 7.7104 -4.3848 41 1 2.3981 8.6213 -3.5455 42 1 -0.0537 9.9005 -6.2092 43 1 4.7568 7.5195 -4.3826 44 1 4.3300 6.1860 -5.5430 45 1 1.8427 5.3946 -5.4768 46 1 1.1918 5.1241 -3.8409 47 1 3.8437 4.1022 -4.9565 48 1 2.4237 3.1271 -4.4981 49 1 3.7306 0.4297 1.7664 50 1 5.8956 2.3520 0.8055 51 1 6.0140 1.2016 2.1586 52 1 5.8939 0.6008 0.4874 53 1 2.4982 2.5314 2.2282 54 1 4.0267 2.4737 3.1390 55 1 3.9012 3.4759 1.6736 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001568250486.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:57:05 Heat of formation + Delta-G solvation = -61.675010 kcal Electronic energy + Delta-G solvation = -31341.966403 eV Core-core repulsion = 27379.474289 eV Total energy + Delta-G solvation = -3962.492115 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.61506 -40.44477 -39.20532 -36.97124 -36.21690 -34.39967 -32.76167 -32.03614 -31.99134 -30.42445 -28.58877 -27.95191 -26.73651 -25.72609 -24.87260 -24.05714 -23.65859 -22.86413 -20.97527 -20.08397 -18.97336 -18.68849 -17.96787 -17.77499 -17.09738 -16.85369 -16.39370 -16.15241 -16.10179 -15.69567 -15.61896 -15.09437 -14.89633 -14.71809 -14.62866 -14.19426 -14.02483 -13.93562 -13.77920 -13.61086 -13.44315 -13.11164 -13.01502 -12.96688 -12.89927 -12.81610 -12.66034 -12.59782 -12.40262 -12.18373 -12.11353 -12.05054 -11.79911 -11.67987 -11.64837 -11.53477 -11.32429 -11.15702 -11.00485 -10.80702 -10.62055 -10.25763 -9.52166 -8.86199 -7.88271 -5.20075 1.43707 1.45614 1.53814 1.74488 2.10146 2.48196 2.83202 3.32470 3.43777 3.54075 3.65116 3.77225 3.95150 3.99719 4.07596 4.17431 4.20466 4.25618 4.32428 4.32742 4.38735 4.47015 4.47674 4.52228 4.56279 4.66590 4.72363 4.74775 4.79152 4.84384 4.89664 4.91768 4.93599 4.94720 4.98399 5.07020 5.07924 5.12442 5.14611 5.16279 5.23246 5.26327 5.29949 5.30662 5.37458 5.51093 5.53257 5.59733 5.62027 5.78647 5.98275 6.42029 6.55460 6.95005 7.29091 7.64289 8.61738 9.28502 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.020330 B = 0.002446 C = 0.002333 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1376.963624 B =11445.916133 C =11999.250471 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.061 3.939 3 O -0.392 6.392 4 C 0.109 3.891 5 H 0.052 0.948 6 C -0.134 4.134 7 C 0.510 3.490 8 O -0.581 6.581 9 N -0.609 5.609 10 C 0.111 3.889 11 C -0.114 4.114 12 C -0.082 4.082 13 C 0.167 3.833 14 N -0.640 5.640 15 C -0.229 4.229 16 H 0.081 0.919 17 C -0.070 4.070 18 N -0.954 5.954 19 Si 0.974 3.026 20 H -0.288 1.288 21 H -0.296 1.296 22 H -0.268 1.268 23 C 0.131 3.869 24 C -0.088 4.088 25 C 0.126 3.874 26 C -0.113 4.113 27 C -0.148 4.148 28 C -0.144 4.144 29 H 0.087 0.913 30 H 0.063 0.937 31 H 0.041 0.959 32 H 0.036 0.964 33 H 0.059 0.941 34 H 0.116 0.884 35 H 0.137 0.863 36 H 0.118 0.882 37 H 0.086 0.914 38 H 0.091 0.909 39 H 0.064 0.936 40 H 0.030 0.970 41 H 0.017 0.983 42 H 0.246 0.754 43 H 0.053 0.947 44 H 0.049 0.951 45 H 0.051 0.949 46 H 0.048 0.952 47 H 0.074 0.926 48 H 0.072 0.928 49 H 0.070 0.930 50 H 0.071 0.929 51 H 0.067 0.933 52 H 0.054 0.946 53 H 0.045 0.955 54 H 0.062 0.938 55 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.700 -17.682 19.231 28.231 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.015 4.015 3 O -0.312 6.312 4 C 0.051 3.949 5 H 0.070 0.930 6 C -0.173 4.173 7 C 0.300 3.700 8 O -0.461 6.461 9 N -0.341 5.341 10 C -0.010 4.010 11 C -0.153 4.153 12 C -0.083 4.083 13 C 0.042 3.958 14 N -0.366 5.366 15 C -0.358 4.358 16 H 0.099 0.901 17 C -0.263 4.263 18 N -0.604 5.604 19 Si 0.803 3.197 20 H -0.215 1.215 21 H -0.222 1.222 22 H -0.193 1.193 23 C 0.007 3.993 24 C -0.127 4.127 25 C 0.003 3.997 26 C -0.132 4.132 27 C -0.205 4.205 28 C -0.201 4.201 29 H 0.105 0.895 30 H 0.082 0.918 31 H 0.060 0.940 32 H 0.054 0.946 33 H 0.078 0.922 34 H 0.134 0.866 35 H 0.155 0.845 36 H 0.136 0.864 37 H 0.104 0.896 38 H 0.109 0.891 39 H 0.083 0.917 40 H 0.048 0.952 41 H 0.035 0.965 42 H 0.055 0.945 43 H 0.070 0.930 44 H 0.067 0.933 45 H 0.069 0.931 46 H 0.067 0.933 47 H 0.093 0.907 48 H 0.091 0.909 49 H 0.088 0.912 50 H 0.090 0.910 51 H 0.086 0.914 52 H 0.073 0.927 53 H 0.064 0.936 54 H 0.081 0.919 55 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 10.148 -17.833 18.744 27.791 hybrid contribution -0.777 0.771 -1.439 1.808 sum 9.371 -17.062 17.305 26.046 Atomic orbital electron populations 1.21721 0.93743 1.02913 1.02060 1.22452 0.95704 0.83654 0.99683 1.87878 1.21774 1.27046 1.94514 1.21918 0.81261 0.96269 0.95455 0.93028 1.22029 1.04540 0.99930 0.90819 1.21221 0.78505 0.81515 0.88726 1.90651 1.43487 1.37597 1.74404 1.48209 1.56868 1.15971 1.13086 1.21880 0.94736 0.83267 1.01137 1.21725 1.00378 0.99077 0.94097 1.22090 0.96645 0.94182 0.95390 1.22177 0.95754 0.92398 0.85483 1.46331 1.23316 1.58684 1.08293 1.19404 1.04330 1.23369 0.88651 0.90089 1.25582 0.97417 1.01893 1.01393 1.70018 1.12061 1.44442 1.33845 0.85136 0.77808 0.77290 0.79466 1.21526 1.22214 1.19307 1.22768 0.91890 0.91868 0.92789 1.21323 0.97482 0.93471 1.00385 1.21354 0.97842 0.97495 0.83006 1.21584 0.96772 1.00063 0.94754 1.21885 0.93200 1.02792 1.02646 1.21807 1.00949 0.97710 0.99628 0.89453 0.91816 0.93955 0.94607 0.92239 0.86621 0.84483 0.86389 0.89571 0.89069 0.91727 0.95167 0.96476 0.94517 0.92952 0.93323 0.93058 0.93283 0.90737 0.90903 0.91201 0.91033 0.91396 0.92705 0.93595 0.91871 0.91478 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.81 10.28 71.98 0.74 -2.07 16 2 C 0.06 1.27 6.48 71.98 0.47 1.73 16 3 O -0.39 -9.41 8.73 -135.18 -1.18 -10.59 16 4 C 0.11 2.02 1.43 30.59 0.04 2.07 16 5 H 0.05 1.09 7.59 -2.38 -0.02 1.07 16 6 C -0.13 -2.25 2.97 29.84 0.09 -2.16 16 7 C 0.51 13.24 7.57 87.66 0.66 13.90 16 8 O -0.58 -20.01 14.81 10.76 0.16 -19.85 16 9 N -0.61 -15.09 2.95 -819.58 -2.42 -17.50 16 10 C 0.11 2.04 6.19 86.26 0.53 2.58 16 11 C -0.11 -2.81 5.24 30.44 0.16 -2.65 16 12 C -0.08 -2.86 0.77 -52.04 -0.04 -2.90 16 13 C 0.17 7.94 6.64 86.31 0.57 8.52 16 14 N -0.64 -32.63 3.53 -722.61 -2.55 -35.19 16 15 C -0.23 -12.98 10.70 84.04 0.90 -12.08 16 16 H 0.08 4.40 7.83 -2.91 -0.02 4.37 16 17 C -0.07 -4.08 5.50 84.86 0.47 -3.61 16 18 N -0.95 -58.91 11.39 21.65 0.25 -58.66 16 19 Si 0.97 46.73 29.55 68.60 2.03 48.76 16 20 H -0.29 -13.66 7.11 99.48 0.71 -12.95 16 21 H -0.30 -14.27 7.11 99.48 0.71 -13.56 16 22 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 23 C 0.13 4.97 7.72 86.32 0.67 5.63 16 24 C -0.09 -3.16 5.21 30.58 0.16 -3.00 16 25 C 0.13 3.77 6.30 86.41 0.54 4.32 16 26 C -0.11 -1.44 2.85 -10.79 -0.03 -1.47 16 27 C -0.15 -1.32 8.78 71.98 0.63 -0.69 16 28 C -0.14 -1.75 8.62 71.98 0.62 -1.13 16 29 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 30 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 31 H 0.04 0.98 8.14 -2.38 -0.02 0.96 16 32 H 0.04 0.81 7.99 -2.38 -0.02 0.79 16 33 H 0.06 0.96 7.58 -2.39 -0.02 0.94 16 34 H 0.12 1.73 6.22 -2.39 -0.01 1.71 16 35 H 0.14 1.38 6.21 -2.38 -0.01 1.37 16 36 H 0.12 1.30 5.89 -2.38 -0.01 1.29 16 37 H 0.09 1.39 8.07 -2.39 -0.02 1.37 16 38 H 0.09 2.03 8.12 -2.39 -0.02 2.01 16 39 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 40 H 0.03 1.66 7.12 -2.39 -0.02 1.64 16 41 H 0.02 0.84 8.09 -2.39 -0.02 0.82 16 42 H 0.25 14.82 8.31 -92.71 -0.77 14.05 16 43 H 0.05 1.81 8.07 -2.38 -0.02 1.79 16 44 H 0.05 1.76 7.41 -2.39 -0.02 1.74 16 45 H 0.05 2.17 8.01 -2.39 -0.02 2.15 16 46 H 0.05 1.83 8.14 -2.39 -0.02 1.82 16 47 H 0.07 2.10 7.49 -2.39 -0.02 2.08 16 48 H 0.07 2.40 6.98 -2.39 -0.02 2.39 16 49 H 0.07 0.93 7.55 -2.39 -0.02 0.91 16 50 H 0.07 0.48 6.73 -2.39 -0.02 0.46 16 51 H 0.07 0.50 8.14 -2.39 -0.02 0.48 16 52 H 0.05 0.51 8.14 -2.39 -0.02 0.50 16 53 H 0.04 0.72 7.80 -2.39 -0.02 0.70 16 54 H 0.06 0.63 8.14 -2.38 -0.02 0.61 16 55 H 0.07 0.68 6.47 -2.39 -0.02 0.67 16 Total: -1.00 -75.64 416.22 4.31 -71.33 By element: Atomic # 1 Polarization: 13.88 SS G_CDS: 0.84 Total: 14.72 kcal Atomic # 6 Polarization: -0.20 SS G_CDS: 7.19 Total: 6.98 kcal Atomic # 7 Polarization: -106.63 SS G_CDS: -4.72 Total: -111.35 kcal Atomic # 8 Polarization: -29.42 SS G_CDS: -1.02 Total: -30.44 kcal Atomic # 14 Polarization: 46.73 SS G_CDS: 2.03 Total: 48.76 kcal Total: -75.64 4.31 -71.33 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001568250486.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.656 kcal (2) G-P(sol) polarization free energy of solvation -75.642 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.985 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.331 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.675 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds