Wall clock time and date at job start Tue Mar 31 2020 22:16:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.36934 * 120.00008 * 2 1 4 4 H 1.07999 * 119.99768 * 163.00081 * 3 2 1 5 5 C 1.38808 * 120.00178 * 343.27291 * 3 2 1 6 6 N 1.31627 * 119.99706 * 344.40209 * 5 3 2 7 7 Si 1.86791 * 120.00305 * 164.40190 * 5 3 2 8 8 H 1.48498 * 109.47120 * 59.99899 * 7 5 3 9 9 H 1.48502 * 109.47573 * 179.97438 * 7 5 3 10 10 H 1.48501 * 109.47398 * 300.00131 * 7 5 3 11 11 C 1.46501 * 120.00052 * 179.97438 * 2 1 3 12 12 C 1.52997 * 109.47731 * 270.00609 * 11 2 1 13 13 C 1.52991 * 109.47469 * 179.97438 * 12 11 2 14 14 C 1.53043 * 109.46099 * 295.06497 * 13 12 11 15 15 C 1.53193 * 109.31583 * 178.61237 * 14 13 12 16 16 N 1.46932 * 108.77185 * 54.63632 * 15 14 13 17 17 C 1.34770 * 120.62897 * 126.37271 * 16 15 14 18 18 O 1.21278 * 120.00209 * 180.02562 * 17 16 15 19 19 C 1.50702 * 120.00249 * 0.02562 * 17 16 15 20 20 C 1.52999 * 109.47538 * 179.97438 * 19 17 16 21 21 H 1.09006 * 109.47683 * 54.98098 * 20 19 17 22 22 C 1.53090 * 109.48425 * 174.99917 * 20 19 17 23 23 C 1.53178 * 109.16581 * 177.59313 * 22 20 19 24 24 C 1.53168 * 109.03450 * 303.02320 * 23 22 20 25 25 C 1.53093 * 109.16844 * 56.97774 * 24 23 22 26 26 O 1.42898 * 109.41618 * 302.39339 * 25 24 23 27 27 C 1.46925 * 118.73918 * 306.39013 * 16 15 14 28 28 C 1.53039 * 109.46114 * 175.00060 * 13 12 11 29 29 H 1.09007 * 109.47235 * 84.96408 * 1 2 3 30 30 H 1.09002 * 109.47443 * 204.96620 * 1 2 3 31 31 H 1.09003 * 109.47577 * 324.96632 * 1 2 3 32 32 H 0.96999 * 119.99827 * 180.02562 * 6 5 3 33 33 H 1.09006 * 109.46678 * 30.00592 * 11 2 1 34 34 H 1.09000 * 109.47251 * 149.99513 * 11 2 1 35 35 H 1.09000 * 109.46830 * 300.00163 * 12 11 2 36 36 H 1.09006 * 109.47233 * 59.99723 * 12 11 2 37 37 H 1.09005 * 109.46312 * 55.02538 * 13 12 11 38 38 H 1.08992 * 109.50040 * 298.56813 * 14 13 12 39 39 H 1.09006 * 109.49370 * 58.66301 * 14 13 12 40 40 H 1.09005 * 109.58701 * 294.85241 * 15 14 13 41 41 H 1.08995 * 109.70892 * 174.49519 * 15 14 13 42 42 H 1.09003 * 109.46930 * 300.00670 * 19 17 16 43 43 H 1.09003 * 109.47198 * 59.99993 * 19 17 16 44 44 H 1.09001 * 109.52157 * 297.50513 * 22 20 19 45 45 H 1.08999 * 109.51732 * 57.68553 * 22 20 19 46 46 H 1.09001 * 109.53996 * 62.88896 * 23 22 20 47 47 H 1.08993 * 109.54041 * 183.15281 * 23 22 20 48 48 H 1.09003 * 109.52386 * 176.88351 * 24 23 22 49 49 H 1.09002 * 109.52487 * 297.07421 * 24 23 22 50 50 H 1.09005 * 109.47693 * 62.37049 * 25 24 23 51 51 H 1.08997 * 109.48171 * 182.39452 * 25 24 23 52 52 H 1.08994 * 109.58612 * 293.82288 * 27 16 15 53 53 H 1.08998 * 109.70181 * 173.46863 * 27 16 15 54 54 H 1.09005 * 109.49465 * 301.33531 * 28 13 12 55 55 H 1.08996 * 109.49945 * 61.39890 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1496 1.1859 0.0000 4 1 3.1942 1.2063 0.2734 5 6 1.4997 2.3626 -0.3460 6 7 0.3372 2.3158 -0.9616 7 14 2.2747 4.0124 0.0620 8 1 3.5937 4.1198 -0.6116 9 1 1.3880 5.1062 -0.4100 10 1 2.4589 4.1231 1.5314 11 6 2.1975 -1.2687 0.0006 12 6 2.4524 -1.7100 1.4432 13 6 3.2168 -3.0352 1.4437 14 6 2.3393 -4.1302 0.8329 15 6 3.1203 -5.4478 0.8033 16 7 3.5984 -5.7447 2.1606 17 6 3.3287 -6.9315 2.7393 18 8 3.7286 -7.1644 3.8603 19 6 2.5302 -7.9694 1.9935 20 6 2.3685 -9.2142 2.8682 21 1 1.9284 -8.9317 3.8246 22 6 1.4540 -10.2189 2.1625 23 6 1.3453 -11.4860 3.0164 24 6 2.7497 -12.0478 3.2575 25 6 3.6142 -10.9725 3.9209 26 8 3.6481 -9.8106 3.0897 27 6 4.3757 -4.7229 2.8750 28 6 3.5806 -3.4134 2.8813 29 1 -0.3634 0.0902 -1.0238 30 1 -0.3634 -0.9316 0.4338 31 1 -0.3634 0.8415 0.5899 32 1 -0.1169 3.1380 -1.2037 33 1 1.6083 -2.0286 -0.5131 34 1 3.1498 -1.1387 -0.5134 35 1 3.0414 -0.9501 1.9568 36 1 1.4999 -1.8401 1.9571 37 1 4.1278 -2.9293 0.8545 38 1 1.4397 -4.2540 1.4357 39 1 2.0613 -3.8492 -0.1829 40 1 3.9712 -5.3531 0.1287 41 1 2.4702 -6.2528 0.4607 42 1 1.5474 -7.5658 1.7498 43 1 3.0511 -8.2371 1.0741 44 1 0.4642 -9.7814 2.0322 45 1 1.8729 -10.4709 1.1883 46 1 0.8808 -11.2430 3.9720 47 1 0.7409 -12.2271 2.4936 48 1 2.6867 -12.9185 3.9103 49 1 3.1949 -12.3368 2.3054 50 1 3.1906 -10.7131 4.8912 51 1 4.6268 -11.3526 4.0562 52 1 5.3290 -4.5691 2.3693 53 1 4.5541 -5.0471 3.9002 54 1 4.1861 -2.6222 3.3235 55 1 2.6693 -3.5434 3.4650 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001568436277.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:16:02 Heat of formation + Delta-G solvation = -100.383350 kcal Electronic energy + Delta-G solvation = -30133.859100 eV Core-core repulsion = 26169.688466 eV Total energy + Delta-G solvation = -3964.170634 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -41.36886 -40.14293 -38.86932 -37.44476 -35.15968 -34.49188 -33.96773 -33.07091 -32.06151 -30.26168 -29.14476 -27.91019 -26.50612 -25.31882 -24.32985 -24.07005 -23.27703 -21.92149 -21.17974 -21.11497 -19.83273 -18.68303 -18.07018 -17.49394 -17.04716 -16.90009 -16.60604 -16.22839 -15.75444 -15.55986 -15.47060 -15.33996 -15.16222 -14.97164 -14.81888 -14.41696 -14.27561 -14.09506 -13.77088 -13.58513 -13.53421 -13.26600 -13.06454 -12.96530 -12.79826 -12.75084 -12.57545 -12.40071 -12.16821 -12.15512 -12.13190 -11.95886 -11.94943 -11.73390 -11.62034 -11.52882 -11.33445 -11.23665 -11.06477 -10.71824 -10.56878 -10.29258 -9.59356 -8.77559 -7.80465 -5.22359 1.46260 1.48969 1.55311 1.70339 2.05968 2.53057 2.86494 3.31727 3.50402 3.67622 3.75130 3.85018 3.92650 3.95881 4.00499 4.04533 4.14350 4.17783 4.24070 4.31189 4.38225 4.42407 4.49166 4.52795 4.59868 4.64496 4.72391 4.74757 4.78312 4.84003 4.86077 4.88096 4.90811 4.96090 4.98824 5.02717 5.09030 5.10714 5.13914 5.15569 5.20274 5.27347 5.29255 5.39304 5.41043 5.55009 5.62208 5.65245 5.67097 5.74782 6.34215 6.35497 6.49209 7.18304 7.24582 7.93863 8.34466 9.23393 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.029963 B = 0.001825 C = 0.001755 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 934.261414 B =15338.663359 C =15947.693480 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.180 3.820 2 N -0.626 5.626 3 C -0.256 4.256 4 H 0.071 0.929 5 C -0.061 4.061 6 N -0.942 5.942 7 Si 0.965 3.035 8 H -0.275 1.275 9 H -0.295 1.295 10 H -0.282 1.282 11 C 0.150 3.850 12 C -0.116 4.116 13 C -0.076 4.076 14 C -0.127 4.127 15 C 0.107 3.893 16 N -0.613 5.613 17 C 0.509 3.491 18 O -0.582 6.582 19 C -0.130 4.130 20 C 0.102 3.898 21 H 0.043 0.957 22 C -0.146 4.146 23 C -0.125 4.125 24 C -0.152 4.152 25 C 0.056 3.944 26 O -0.395 6.395 27 C 0.115 3.885 28 C -0.120 4.120 29 H 0.000 1.000 30 H 0.028 0.972 31 H 0.016 0.984 32 H 0.246 0.754 33 H 0.056 0.944 34 H 0.040 0.960 35 H 0.039 0.961 36 H 0.043 0.957 37 H 0.076 0.924 38 H 0.061 0.939 39 H 0.087 0.913 40 H 0.083 0.917 41 H 0.112 0.888 42 H 0.135 0.865 43 H 0.120 0.880 44 H 0.090 0.910 45 H 0.080 0.920 46 H 0.060 0.940 47 H 0.083 0.917 48 H 0.085 0.915 49 H 0.071 0.929 50 H 0.040 0.960 51 H 0.094 0.906 52 H 0.076 0.924 53 H 0.071 0.929 54 H 0.074 0.926 55 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.591 -29.732 5.103 30.380 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 N -0.350 5.350 3 C -0.386 4.386 4 H 0.089 0.911 5 C -0.255 4.255 6 N -0.590 5.590 7 Si 0.794 3.206 8 H -0.201 1.201 9 H -0.221 1.221 10 H -0.208 1.208 11 C 0.025 3.975 12 C -0.156 4.156 13 C -0.095 4.095 14 C -0.165 4.165 15 C -0.014 4.014 16 N -0.346 5.346 17 C 0.299 3.701 18 O -0.462 6.462 19 C -0.170 4.170 20 C 0.044 3.956 21 H 0.061 0.939 22 C -0.183 4.183 23 C -0.162 4.162 24 C -0.189 4.189 25 C -0.020 4.020 26 O -0.314 6.314 27 C -0.008 4.008 28 C -0.158 4.158 29 H 0.019 0.981 30 H 0.047 0.953 31 H 0.035 0.965 32 H 0.056 0.944 33 H 0.074 0.926 34 H 0.059 0.941 35 H 0.058 0.942 36 H 0.062 0.938 37 H 0.094 0.906 38 H 0.080 0.920 39 H 0.106 0.894 40 H 0.101 0.899 41 H 0.130 0.870 42 H 0.153 0.847 43 H 0.138 0.862 44 H 0.109 0.891 45 H 0.098 0.902 46 H 0.079 0.921 47 H 0.101 0.899 48 H 0.104 0.896 49 H 0.090 0.910 50 H 0.059 0.941 51 H 0.113 0.887 52 H 0.094 0.906 53 H 0.089 0.911 54 H 0.092 0.908 55 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 3.869 -29.653 5.536 30.412 hybrid contribution 0.013 1.459 0.525 1.550 sum 3.882 -28.194 6.061 29.098 Atomic orbital electron populations 1.20503 0.82880 0.95755 0.97364 1.44258 1.02206 1.02092 1.86406 1.19515 0.95295 0.85939 1.37844 0.91095 1.25656 0.98400 1.01364 1.00086 1.70268 1.18226 1.26531 1.43992 0.85357 0.77590 0.79721 0.77928 1.20074 1.22136 1.20842 1.20981 0.95286 0.86329 0.94887 1.22014 0.99038 0.95907 0.98649 1.21040 0.98821 0.93843 0.95834 1.21992 0.98244 0.93956 1.02346 1.21993 0.99591 0.98175 0.81688 1.48283 1.54106 1.14646 1.17548 1.21157 0.79866 0.82844 0.86216 1.90668 1.54641 1.79374 1.21470 1.21874 1.02752 0.92283 1.00043 1.21857 0.84560 0.91893 0.97262 0.93912 1.22207 1.00461 0.95816 0.99851 1.21616 0.96842 0.97438 1.00320 1.22173 0.96080 0.98567 1.02113 1.22638 1.01294 0.85413 0.92689 1.87926 1.29738 1.43445 1.70337 1.21502 0.94290 0.87194 0.97788 1.21874 1.00136 0.96567 0.97222 0.98121 0.95308 0.96544 0.94438 0.92604 0.94132 0.94245 0.93835 0.90576 0.92047 0.89433 0.89901 0.87027 0.84738 0.86238 0.89105 0.90180 0.92120 0.89870 0.89649 0.90985 0.94144 0.88738 0.90593 0.91050 0.90781 0.92871 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 8.98 8.97 127.77 1.15 10.13 16 2 N -0.63 -31.29 2.93 -726.94 -2.13 -33.42 16 3 C -0.26 -14.12 9.70 84.03 0.82 -13.30 16 4 H 0.07 3.79 7.88 -2.91 -0.02 3.77 16 5 C -0.06 -3.46 5.07 84.86 0.43 -3.03 16 6 N -0.94 -56.45 10.50 21.65 0.23 -56.22 16 7 Si 0.97 45.63 29.58 68.60 2.03 47.66 16 8 H -0.27 -12.47 7.11 99.48 0.71 -11.76 16 9 H -0.30 -14.03 7.11 99.48 0.71 -13.32 16 10 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 11 C 0.15 5.71 5.40 86.38 0.47 6.17 16 12 C -0.12 -3.72 5.01 30.59 0.15 -3.57 16 13 C -0.08 -1.77 2.15 -10.77 -0.02 -1.80 16 14 C -0.13 -2.37 5.14 30.67 0.16 -2.22 16 15 C 0.11 1.55 6.34 86.36 0.55 2.10 16 16 N -0.61 -12.44 2.97 -818.90 -2.43 -14.87 16 17 C 0.51 11.81 7.58 87.66 0.66 12.48 16 18 O -0.58 -18.74 14.84 10.69 0.16 -18.58 16 19 C -0.13 -1.92 3.76 29.85 0.11 -1.81 16 20 C 0.10 1.77 2.19 30.62 0.07 1.84 16 21 H 0.04 0.91 7.95 -2.38 -0.02 0.89 16 22 C -0.15 -1.59 5.42 30.68 0.17 -1.42 16 23 C -0.12 -1.29 6.03 30.71 0.19 -1.11 16 24 C -0.15 -1.72 6.14 30.68 0.19 -1.53 16 25 C 0.06 0.94 6.84 72.01 0.49 1.43 16 26 O -0.39 -8.74 9.64 -135.27 -1.30 -10.05 16 27 C 0.11 2.54 6.43 86.36 0.56 3.09 16 28 C -0.12 -2.73 5.36 30.67 0.16 -2.57 16 29 H 0.00 0.03 7.50 -2.38 -0.02 0.01 16 30 H 0.03 1.20 8.03 -2.39 -0.02 1.18 16 31 H 0.02 0.88 6.97 -2.39 -0.02 0.86 16 32 H 0.25 14.39 8.31 -92.71 -0.77 13.62 16 33 H 0.06 1.89 6.46 -2.38 -0.02 1.87 16 34 H 0.04 1.55 8.04 -2.39 -0.02 1.53 16 35 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 36 H 0.04 1.47 8.14 -2.38 -0.02 1.45 16 37 H 0.08 1.71 8.14 -2.38 -0.02 1.69 16 38 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 39 H 0.09 1.59 6.50 -2.38 -0.02 1.57 16 40 H 0.08 1.06 8.14 -2.38 -0.02 1.04 16 41 H 0.11 0.99 5.93 -2.39 -0.01 0.97 16 42 H 0.13 1.21 7.69 -2.39 -0.02 1.20 16 43 H 0.12 1.35 7.94 -2.39 -0.02 1.33 16 44 H 0.09 0.71 8.14 -2.39 -0.02 0.69 16 45 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 46 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 47 H 0.08 0.63 8.14 -2.39 -0.02 0.61 16 48 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 49 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 50 H 0.04 0.72 8.14 -2.38 -0.02 0.70 16 51 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 52 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 53 H 0.07 1.84 7.01 -2.39 -0.02 1.83 16 54 H 0.07 1.68 8.14 -2.38 -0.02 1.66 16 55 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 Total: -1.00 -73.49 415.81 3.66 -69.83 By element: Atomic # 1 Polarization: 9.92 SS G_CDS: 0.83 Total: 10.75 kcal Atomic # 6 Polarization: -1.40 SS G_CDS: 6.29 Total: 4.89 kcal Atomic # 7 Polarization: -100.17 SS G_CDS: -4.34 Total: -104.51 kcal Atomic # 8 Polarization: -27.48 SS G_CDS: -1.15 Total: -28.62 kcal Atomic # 14 Polarization: 45.63 SS G_CDS: 2.03 Total: 47.66 kcal Total: -73.49 3.66 -69.83 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001568436277.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.550 kcal (2) G-P(sol) polarization free energy of solvation -73.494 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.044 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.661 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.834 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.383 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds