Wall clock time and date at job start Tue Mar 31 2020 23:02:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42901 * 114.00132 * 2 1 4 4 H 1.08997 * 109.46981 * 29.98844 * 3 2 1 5 5 C 1.50704 * 109.46771 * 269.99383 * 3 2 1 6 6 O 1.21279 * 120.00006 * 355.00199 * 5 3 2 7 7 N 1.34773 * 119.99971 * 174.99570 * 5 3 2 8 8 C 1.46503 * 119.99928 * 180.02562 * 7 5 3 9 9 C 1.52997 * 109.46988 * 180.02562 * 8 7 5 10 10 H 1.09004 * 109.47346 * 304.99692 * 9 8 7 11 11 C 1.52997 * 109.47504 * 64.99769 * 9 8 7 12 12 C 1.52997 * 109.47504 * 179.97438 * 11 9 8 13 13 C 1.53004 * 109.47236 * 300.00184 * 12 11 9 14 14 H 1.09004 * 109.46741 * 300.00111 * 13 12 11 15 15 C 1.52997 * 109.47236 * 180.02562 * 13 12 11 16 16 N 1.46505 * 109.47212 * 64.99775 * 15 13 12 17 17 C 1.36936 * 119.99992 * 179.97438 * 16 15 13 18 18 H 1.08006 * 119.99834 * 0.02562 * 17 16 15 19 19 C 1.38801 * 120.00093 * 180.02562 * 17 16 15 20 20 N 1.31619 * 120.00176 * 0.02562 * 19 17 16 21 21 Si 1.86804 * 120.00265 * 180.02562 * 19 17 16 22 22 H 1.48503 * 109.46968 * 0.02562 * 21 19 17 23 23 H 1.48497 * 109.47299 * 119.99957 * 21 19 17 24 24 H 1.48495 * 109.47075 * 240.00117 * 21 19 17 25 25 C 1.52997 * 109.47024 * 59.99522 * 13 12 11 26 26 C 1.52997 * 109.47504 * 300.00313 * 25 13 12 27 27 C 1.52996 * 109.47628 * 149.99655 * 3 2 1 28 28 C 1.53789 * 113.61254 * 39.13008 * 27 3 2 29 29 C 1.53954 * 87.01938 * 220.05137 * 28 27 3 30 30 C 1.53781 * 87.11171 * 25.36575 * 29 28 27 31 31 H 1.08997 * 109.47759 * 300.00609 * 1 2 3 32 32 H 1.09008 * 109.46578 * 60.00956 * 1 2 3 33 33 H 1.09002 * 109.46649 * 180.02562 * 1 2 3 34 34 H 0.97003 * 120.00223 * 0.02562 * 7 5 3 35 35 H 1.08997 * 109.47229 * 60.00018 * 8 7 5 36 36 H 1.09001 * 109.47141 * 300.00183 * 8 7 5 37 37 H 1.09002 * 109.47016 * 300.00259 * 11 9 8 38 38 H 1.09004 * 109.47325 * 59.99936 * 11 9 8 39 39 H 1.09001 * 109.47630 * 180.02562 * 12 11 9 40 40 H 1.09004 * 109.47346 * 59.99924 * 12 11 9 41 41 H 1.09002 * 109.47153 * 304.99767 * 15 13 12 42 42 H 1.09001 * 109.46832 * 184.99958 * 15 13 12 43 43 H 0.96996 * 119.99606 * 0.02562 * 16 15 13 44 44 H 0.97001 * 120.00803 * 179.97438 * 20 19 17 45 45 H 1.09004 * 109.46881 * 60.00674 * 25 13 12 46 46 H 1.09002 * 109.47016 * 180.02562 * 25 13 12 47 47 H 1.09001 * 109.47630 * 179.97438 * 26 25 13 48 48 H 1.09004 * 109.47346 * 300.00076 * 26 25 13 49 49 H 1.08998 * 112.85449 * 170.33140 * 27 3 2 50 50 H 1.08994 * 113.61385 * 334.57025 * 28 27 3 51 51 H 1.08996 * 113.60843 * 105.47450 * 28 27 3 52 52 H 1.09003 * 113.53536 * 270.81423 * 29 28 27 53 53 H 1.08998 * 113.74156 * 139.94606 * 29 28 27 54 54 H 1.09001 * 113.61385 * 220.08934 * 30 29 28 55 55 H 1.09001 * 113.61256 * 89.18646 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3449 1.9994 0.5136 5 6 2.2147 1.7642 -1.4209 6 8 1.9793 1.0104 -2.3413 7 7 2.6589 3.0123 -1.6687 8 6 2.8571 3.4584 -3.0500 9 6 3.3631 4.9023 -3.0519 10 1 2.6735 5.5298 -2.4873 11 6 4.7489 4.9580 -2.4058 12 6 5.2551 6.4018 -2.4082 13 6 5.3435 6.9088 -3.8491 14 1 6.0331 6.2810 -4.4135 15 6 5.8504 8.3524 -3.8516 16 7 7.2239 8.3886 -3.3430 17 6 7.8896 9.5819 -3.2534 18 1 7.4019 10.4965 -3.5574 19 6 9.1910 9.6162 -2.7721 20 7 9.7854 8.5017 -2.4022 21 14 10.0989 11.2441 -2.6492 22 1 9.2163 12.3402 -3.1236 23 1 10.4801 11.4929 -1.2357 24 1 11.3217 11.1936 -3.4901 25 6 3.9578 6.8531 -4.4953 26 6 3.4515 5.4093 -4.4928 27 6 3.3588 1.2634 0.7213 28 6 4.1772 -0.0043 0.4238 29 6 4.5677 -0.0045 1.9130 30 6 3.2649 0.7695 2.1747 31 1 -0.3634 0.5139 0.8899 32 1 -0.3633 0.5137 -0.8902 33 1 -0.3633 -1.0277 0.0005 34 1 2.8475 3.6151 -0.9326 35 1 1.9112 3.4038 -3.5887 36 1 3.5905 2.8161 -3.5376 37 1 4.6860 4.5964 -1.3794 38 1 5.4386 4.3306 -2.9704 39 1 6.2426 6.4415 -1.9483 40 1 4.5656 7.0296 -1.8438 41 1 5.2108 8.9632 -3.2144 42 1 5.8292 8.7431 -4.8690 43 1 7.6619 7.5672 -3.0705 44 1 10.6951 8.5255 -2.0662 45 1 3.2683 7.4809 -3.9309 46 1 4.0209 7.2139 -5.5219 47 1 2.4641 5.3697 -4.9527 48 1 4.1411 4.7815 -5.0572 49 1 3.9276 2.1865 0.6097 50 1 3.5673 -0.8593 0.1323 51 1 5.0177 0.1666 -0.2488 52 1 5.4682 0.5713 2.1270 53 1 4.5834 -0.9974 2.3624 54 1 3.3699 1.5641 2.9134 55 1 2.4052 0.1264 2.3626 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001569864362.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:02:21 Heat of formation + Delta-G solvation = -102.011486 kcal Electronic energy + Delta-G solvation = -30075.384076 eV Core-core repulsion = 26111.142840 eV Total energy + Delta-G solvation = -3964.241236 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.46538 -40.15262 -39.26275 -37.84533 -36.88062 -35.55375 -33.68527 -31.93517 -31.60227 -30.56299 -28.04591 -27.14431 -26.46620 -25.79528 -24.58442 -24.03583 -23.16097 -21.62220 -21.38851 -20.63977 -20.25593 -19.14707 -18.56332 -17.77351 -17.31629 -16.69675 -16.47582 -16.35727 -16.05999 -15.94626 -15.49988 -15.45750 -15.24842 -14.93697 -14.70197 -14.57760 -14.51699 -14.11728 -13.85859 -13.50871 -13.30878 -13.15595 -13.06933 -13.00394 -12.88097 -12.81175 -12.59775 -12.45305 -12.35010 -12.06500 -11.94245 -11.86482 -11.76011 -11.65319 -11.49284 -11.31106 -11.26781 -11.08922 -11.03696 -10.91651 -10.80822 -10.23111 -10.08526 -8.97875 -7.95143 -5.23327 1.46654 1.47446 1.54929 1.57622 2.08521 2.55913 2.79708 3.38236 3.50152 3.65125 3.72922 3.75060 3.78731 3.84224 3.94506 3.98622 3.99627 4.21616 4.23270 4.30302 4.34968 4.42895 4.51277 4.54816 4.56718 4.59892 4.63486 4.67499 4.77157 4.78835 4.83119 4.86212 4.92194 4.95857 4.98879 5.06012 5.10930 5.11132 5.12573 5.21577 5.24931 5.31393 5.32038 5.34601 5.40169 5.46884 5.50659 5.61462 5.63304 5.68282 6.03398 6.27879 6.54731 7.22275 7.33779 8.11700 8.34765 9.28705 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.014308 B = 0.002114 C = 0.001894 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1956.523957 B =13241.284231 C =14781.893205 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.374 6.374 3 C 0.086 3.914 4 H 0.116 0.884 5 C 0.488 3.512 6 O -0.576 6.576 7 N -0.714 5.714 8 C 0.130 3.870 9 C -0.084 4.084 10 H 0.093 0.907 11 C -0.106 4.106 12 C -0.103 4.103 13 C -0.086 4.086 14 H 0.052 0.948 15 C 0.154 3.846 16 N -0.744 5.744 17 C -0.244 4.244 18 H 0.074 0.926 19 C -0.078 4.078 20 N -0.970 5.970 21 Si 0.973 3.027 22 H -0.266 1.266 23 H -0.292 1.292 24 H -0.294 1.294 25 C -0.102 4.102 26 C -0.106 4.106 27 C -0.109 4.109 28 C -0.139 4.139 29 C -0.140 4.140 30 C -0.119 4.119 31 H 0.066 0.934 32 H 0.031 0.969 33 H 0.097 0.903 34 H 0.414 0.586 35 H 0.066 0.934 36 H 0.051 0.949 37 H 0.073 0.927 38 H 0.051 0.949 39 H 0.037 0.963 40 H 0.065 0.935 41 H 0.020 0.980 42 H 0.013 0.987 43 H 0.374 0.626 44 H 0.251 0.749 45 H 0.072 0.928 46 H 0.064 0.936 47 H 0.082 0.918 48 H 0.058 0.942 49 H 0.118 0.882 50 H 0.076 0.924 51 H 0.052 0.948 52 H 0.085 0.915 53 H 0.070 0.930 54 H 0.085 0.915 55 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.828 -15.704 8.073 28.076 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.291 6.291 3 C 0.024 3.976 4 H 0.133 0.867 5 C 0.275 3.725 6 O -0.456 6.456 7 N -0.368 5.368 8 C 0.006 3.994 9 C -0.103 4.103 10 H 0.111 0.889 11 C -0.143 4.143 12 C -0.140 4.140 13 C -0.105 4.105 14 H 0.070 0.930 15 C 0.027 3.973 16 N -0.387 5.387 17 C -0.376 4.376 18 H 0.092 0.908 19 C -0.270 4.270 20 N -0.621 5.621 21 Si 0.802 3.198 22 H -0.191 1.191 23 H -0.219 1.219 24 H -0.221 1.221 25 C -0.140 4.140 26 C -0.144 4.144 27 C -0.128 4.128 28 C -0.176 4.176 29 C -0.177 4.177 30 C -0.156 4.156 31 H 0.085 0.915 32 H 0.050 0.950 33 H 0.115 0.885 34 H 0.251 0.749 35 H 0.084 0.916 36 H 0.069 0.931 37 H 0.092 0.908 38 H 0.069 0.931 39 H 0.056 0.944 40 H 0.083 0.917 41 H 0.038 0.962 42 H 0.031 0.969 43 H 0.206 0.794 44 H 0.060 0.940 45 H 0.091 0.909 46 H 0.083 0.917 47 H 0.100 0.900 48 H 0.077 0.923 49 H 0.136 0.864 50 H 0.095 0.905 51 H 0.071 0.929 52 H 0.104 0.896 53 H 0.088 0.912 54 H 0.103 0.897 55 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -21.906 -16.227 7.387 28.244 hybrid contribution 1.167 0.968 0.048 1.517 sum -20.739 -15.259 7.435 26.800 Atomic orbital electron populations 1.23000 0.79657 1.04019 1.00469 1.87953 1.21155 1.25733 1.94286 1.21995 0.98019 0.86940 0.90622 0.86670 1.21880 0.76242 0.81600 0.92824 1.90686 1.52169 1.54983 1.47724 1.46013 1.66958 1.14185 1.09655 1.21338 1.00517 0.94862 0.82703 1.21314 0.96893 0.94246 0.97805 0.88882 1.21550 0.96065 0.95688 1.01022 1.21412 1.00301 0.96523 0.95793 1.21237 0.97458 0.94773 0.97018 0.92967 1.20890 0.84995 0.95894 0.95497 1.42620 1.12190 1.06365 1.77537 1.19688 0.95711 0.87965 1.34212 0.90829 1.25568 0.98311 1.00342 1.02755 1.69822 1.13619 1.27264 1.51390 0.85073 0.78272 0.79545 0.76882 1.19082 1.21880 1.22118 1.21439 0.94610 0.97241 1.00678 1.21461 1.01933 0.95524 0.95444 1.22814 0.92832 1.00025 0.97135 1.22852 0.99018 0.98258 0.97494 1.22832 0.98293 1.01234 0.95364 1.22839 0.98226 1.00164 0.94362 0.91502 0.95022 0.88483 0.74900 0.91584 0.93056 0.90805 0.93054 0.94424 0.91673 0.96223 0.96902 0.79394 0.94029 0.90945 0.91706 0.89965 0.92305 0.86430 0.90515 0.92898 0.89638 0.91151 0.89671 0.89538 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.33 10.81 113.37 1.23 1.55 16 2 O -0.37 -7.06 7.99 -129.99 -1.04 -8.10 16 3 C 0.09 1.31 2.53 29.85 0.08 1.39 16 4 H 0.12 1.07 7.79 -2.39 -0.02 1.05 16 5 C 0.49 10.24 7.11 87.66 0.62 10.86 16 6 O -0.58 -17.67 16.51 15.96 0.26 -17.41 16 7 N -0.71 -11.49 5.22 -463.06 -2.42 -13.91 16 8 C 0.13 2.35 5.06 86.38 0.44 2.78 16 9 C -0.08 -1.41 2.23 -10.79 -0.02 -1.43 16 10 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 11 C -0.11 -2.24 5.08 30.59 0.16 -2.09 16 12 C -0.10 -2.92 5.08 30.59 0.16 -2.77 16 13 C -0.09 -2.64 2.22 -10.79 -0.02 -2.66 16 14 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 15 C 0.15 6.13 5.65 86.38 0.49 6.62 16 16 N -0.74 -38.28 5.33 -343.45 -1.83 -40.11 16 17 C -0.24 -13.81 9.99 84.03 0.84 -12.97 16 18 H 0.07 4.02 7.83 -2.91 -0.02 4.00 16 19 C -0.08 -4.51 5.50 84.86 0.47 -4.04 16 20 N -0.97 -59.83 13.06 21.65 0.28 -59.55 16 21 Si 0.97 46.42 29.55 68.60 2.03 48.45 16 22 H -0.27 -11.93 7.11 99.48 0.71 -11.23 16 23 H -0.29 -13.81 7.11 99.48 0.71 -13.10 16 24 H -0.29 -14.02 7.11 99.48 0.71 -13.32 16 25 C -0.10 -2.28 5.20 30.59 0.16 -2.13 16 26 C -0.11 -1.93 5.20 30.59 0.16 -1.77 16 27 C -0.11 -1.50 3.54 -10.26 -0.04 -1.53 16 28 C -0.14 -2.47 7.48 31.18 0.23 -2.23 16 29 C -0.14 -1.89 8.09 31.18 0.25 -1.64 16 30 C -0.12 -1.33 7.54 31.12 0.23 -1.10 16 31 H 0.07 0.55 8.08 -2.39 -0.02 0.53 16 32 H 0.03 0.50 8.14 -2.38 -0.02 0.48 16 33 H 0.10 1.10 8.14 -2.39 -0.02 1.08 16 34 H 0.41 4.41 7.52 -92.71 -0.70 3.72 16 35 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 36 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 37 H 0.07 1.31 7.18 -2.39 -0.02 1.29 16 38 H 0.05 1.23 8.14 -2.38 -0.02 1.21 16 39 H 0.04 1.35 7.18 -2.39 -0.02 1.33 16 40 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 41 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 42 H 0.01 0.53 8.14 -2.39 -0.02 0.51 16 43 H 0.37 20.41 6.85 -92.71 -0.64 19.78 16 44 H 0.25 14.94 8.31 -92.71 -0.77 14.17 16 45 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 46 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 47 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 48 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 49 H 0.12 1.32 7.97 -2.39 -0.02 1.30 16 50 H 0.08 1.64 7.03 -2.39 -0.02 1.62 16 51 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 52 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 53 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 54 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16 55 H 0.09 1.00 7.72 -2.39 -0.02 0.98 16 Total: -1.00 -73.82 427.30 2.23 -71.59 By element: Atomic # 1 Polarization: 32.67 SS G_CDS: -0.48 Total: 32.19 kcal Atomic # 6 Polarization: -18.58 SS G_CDS: 5.42 Total: -13.16 kcal Atomic # 7 Polarization: -109.60 SS G_CDS: -3.96 Total: -113.57 kcal Atomic # 8 Polarization: -24.73 SS G_CDS: -0.78 Total: -25.51 kcal Atomic # 14 Polarization: 46.42 SS G_CDS: 2.03 Total: 48.45 kcal Total: -73.82 2.23 -71.59 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569864362.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.424 kcal (2) G-P(sol) polarization free energy of solvation -73.816 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.240 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.228 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.588 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.011 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds