Wall clock time and date at job start Tue Mar 31 2020 23:02:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42892 * 114.00548 * 2 1 4 4 H 1.09000 * 109.47215 * 333.57351 * 3 2 1 5 5 C 1.50707 * 109.47155 * 93.57212 * 3 2 1 6 6 O 1.21285 * 119.99578 * 5.00477 * 5 3 2 7 7 N 1.34776 * 120.00037 * 185.00107 * 5 3 2 8 8 C 1.46499 * 119.99697 * 180.02562 * 7 5 3 9 9 C 1.53005 * 109.46829 * 179.97438 * 8 7 5 10 10 H 1.08990 * 109.47102 * 305.00064 * 9 8 7 11 11 C 1.52999 * 109.46869 * 65.00413 * 9 8 7 12 12 C 1.53005 * 109.46869 * 179.97438 * 11 9 8 13 13 C 1.52997 * 109.46811 * 299.99560 * 12 11 9 14 14 H 1.08999 * 109.47477 * 299.99709 * 13 12 11 15 15 C 1.53006 * 109.46993 * 180.02562 * 13 12 11 16 16 N 1.46501 * 109.47015 * 64.99653 * 15 13 12 17 17 C 1.36939 * 119.99802 * 179.97438 * 16 15 13 18 18 H 1.08003 * 119.99710 * 0.02562 * 17 16 15 19 19 C 1.38812 * 120.00152 * 180.02562 * 17 16 15 20 20 N 1.31614 * 119.99683 * 0.02562 * 19 17 16 21 21 Si 1.86795 * 120.00081 * 180.02562 * 19 17 16 22 22 H 1.48499 * 109.47425 * 59.99836 * 21 19 17 23 23 H 1.48500 * 109.47103 * 180.02562 * 21 19 17 24 24 H 1.48505 * 109.47168 * 300.00054 * 21 19 17 25 25 C 1.52994 * 109.47314 * 60.00363 * 13 12 11 26 26 C 1.52997 * 109.46811 * 184.99973 * 9 8 7 27 27 C 1.52999 * 109.47621 * 213.57123 * 3 2 1 28 28 C 1.53780 * 113.61308 * 323.03852 * 27 3 2 29 29 C 1.54053 * 86.98532 * 140.01346 * 28 27 3 30 30 C 1.53773 * 87.07879 * 334.56781 * 29 28 27 31 31 H 1.09000 * 109.47023 * 64.94471 * 1 2 3 32 32 H 1.09000 * 109.47687 * 184.94507 * 1 2 3 33 33 H 1.09008 * 109.46775 * 304.95076 * 1 2 3 34 34 H 0.96995 * 119.99869 * 0.02562 * 7 5 3 35 35 H 1.08999 * 109.47224 * 300.00329 * 8 7 5 36 36 H 1.08997 * 109.47058 * 60.00025 * 8 7 5 37 37 H 1.09004 * 109.47239 * 299.99340 * 11 9 8 38 38 H 1.09003 * 109.47536 * 59.99659 * 11 9 8 39 39 H 1.09008 * 109.47040 * 179.97438 * 12 11 9 40 40 H 1.08990 * 109.47102 * 59.99651 * 12 11 9 41 41 H 1.08992 * 109.46949 * 185.00358 * 15 13 12 42 42 H 1.09004 * 109.46922 * 305.00062 * 15 13 12 43 43 H 0.96991 * 120.00203 * 0.02562 * 16 15 13 44 44 H 0.97006 * 119.99885 * 180.02562 * 20 19 17 45 45 H 1.08997 * 109.47172 * 179.97438 * 25 13 12 46 46 H 1.09003 * 109.47251 * 59.99768 * 25 13 12 47 47 H 1.08999 * 109.47477 * 299.99709 * 26 9 8 48 48 H 1.08994 * 109.47242 * 60.00140 * 26 9 8 49 49 H 1.08997 * 112.85477 * 191.83661 * 27 3 2 50 50 H 1.08995 * 113.61478 * 254.60761 * 28 27 3 51 51 H 1.09001 * 113.61560 * 25.51221 * 28 27 3 52 52 H 1.09000 * 113.62115 * 220.01417 * 29 28 27 53 53 H 1.09008 * 113.68753 * 89.12791 * 29 28 27 54 54 H 1.09000 * 113.61498 * 270.88139 * 30 29 28 55 55 H 1.08997 * 113.61511 * 139.97549 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3053 0.0000 4 1 1.3175 2.0116 -0.4574 5 6 2.2956 1.7282 1.4181 6 8 2.1124 0.9511 2.3311 7 7 2.7543 2.9699 1.6717 8 6 3.0320 3.3807 3.0502 9 6 3.5383 4.8245 3.0598 10 1 4.4001 4.9117 2.3983 11 6 2.4270 5.7579 2.5755 12 6 2.9330 7.2018 2.5857 13 6 3.3404 7.5892 4.0087 14 1 2.4784 7.5017 4.6700 15 6 3.8459 9.0334 4.0191 16 7 2.7474 9.9378 3.6704 17 6 2.9638 11.2889 3.6163 18 1 3.9445 11.6876 3.8303 19 6 1.9229 12.1459 3.2865 20 7 0.7277 11.6599 3.0263 21 14 2.2183 13.9888 3.2121 22 1 3.2605 14.2825 2.1957 23 1 0.9563 14.6779 2.8411 24 1 2.6731 14.4714 4.5409 25 6 4.4517 6.6559 4.4931 26 6 3.9462 5.2124 4.4825 27 6 3.3157 1.2824 -0.7976 28 6 4.1232 -0.0143 -0.6204 29 6 4.4315 0.0678 -2.1276 30 6 3.1312 0.8764 -2.2694 31 1 -0.3633 0.4352 -0.9310 32 1 -0.3634 -1.0238 0.0886 33 1 -0.3633 0.5888 0.8424 34 1 2.9004 3.5914 0.9416 35 1 2.1187 3.3116 3.6410 36 1 3.7919 2.7268 3.4781 37 1 2.1364 5.4816 1.5619 38 1 1.5651 5.6706 3.2371 39 1 2.1414 7.8667 2.2402 40 1 3.7950 7.2893 1.9245 41 1 4.2187 9.2806 5.0129 42 1 4.6506 9.1419 3.2918 43 1 1.8666 9.5797 3.4787 44 1 0.0004 12.2588 2.7955 45 1 4.7422 6.9323 5.5066 46 1 5.3138 6.7435 3.8317 47 1 3.0843 5.1252 5.1441 48 1 4.7378 4.5475 4.8276 49 1 3.9086 2.1874 -0.6654 50 1 5.0022 0.1018 0.0135 51 1 3.5128 -0.8747 -0.3459 52 1 4.4027 -0.8978 -2.6325 53 1 5.3294 0.6404 -2.3603 54 1 2.2502 0.2591 -2.4449 55 1 3.2100 1.7112 -2.9658 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001569864363.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:02:26 Heat of formation + Delta-G solvation = -101.660242 kcal Electronic energy + Delta-G solvation = -29935.852434 eV Core-core repulsion = 25971.626429 eV Total energy + Delta-G solvation = -3964.226005 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.45799 -40.15769 -39.26396 -37.84377 -36.88241 -35.55466 -33.68601 -31.93807 -31.60438 -30.56357 -28.04763 -27.16664 -26.44068 -25.79613 -24.57731 -24.02566 -23.16894 -21.61983 -21.38945 -20.64095 -20.25499 -19.14463 -18.55684 -17.79284 -17.29180 -16.70580 -16.49207 -16.30830 -16.18281 -15.80179 -15.57946 -15.45134 -15.25614 -14.92621 -14.71314 -14.56404 -14.49015 -14.15627 -13.88183 -13.46251 -13.32562 -13.15562 -13.06394 -13.00434 -12.83833 -12.79644 -12.58444 -12.47158 -12.36259 -12.12680 -11.94294 -11.87032 -11.76292 -11.63125 -11.50131 -11.31081 -11.26192 -11.08230 -11.02613 -10.91217 -10.80432 -10.23816 -10.08566 -8.97897 -7.94844 -5.23028 1.46524 1.49688 1.55243 1.55872 2.06300 2.56280 2.80341 3.38205 3.50908 3.64605 3.73024 3.75853 3.78492 3.84399 3.94908 3.98963 4.00434 4.20362 4.22915 4.30559 4.34526 4.42991 4.51433 4.52908 4.56487 4.59749 4.63408 4.67465 4.77201 4.79088 4.81761 4.86357 4.92573 4.95678 5.00147 5.05969 5.11024 5.12951 5.13614 5.21629 5.24903 5.31115 5.32768 5.34557 5.39941 5.46517 5.50411 5.61303 5.64626 5.68173 6.01741 6.27899 6.54426 7.22071 7.33876 8.11908 8.35094 9.28604 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.015976 B = 0.001920 C = 0.001864 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1752.219732 B =14576.610669 C =15016.339874 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.373 6.373 3 C 0.083 3.917 4 H 0.111 0.889 5 C 0.489 3.511 6 O -0.577 6.577 7 N -0.714 5.714 8 C 0.130 3.870 9 C -0.084 4.084 10 H 0.092 0.908 11 C -0.106 4.106 12 C -0.103 4.103 13 C -0.086 4.086 14 H 0.052 0.948 15 C 0.153 3.847 16 N -0.744 5.744 17 C -0.247 4.247 18 H 0.073 0.927 19 C -0.077 4.077 20 N -0.970 5.970 21 Si 0.974 3.026 22 H -0.277 1.277 23 H -0.295 1.295 24 H -0.279 1.279 25 C -0.102 4.102 26 C -0.106 4.106 27 C -0.110 4.110 28 C -0.137 4.137 29 C -0.137 4.137 30 C -0.123 4.123 31 H 0.065 0.935 32 H 0.096 0.904 33 H 0.031 0.969 34 H 0.414 0.586 35 H 0.053 0.947 36 H 0.064 0.936 37 H 0.073 0.927 38 H 0.052 0.948 39 H 0.037 0.963 40 H 0.064 0.936 41 H 0.013 0.987 42 H 0.019 0.981 43 H 0.374 0.626 44 H 0.251 0.749 45 H 0.064 0.936 46 H 0.071 0.929 47 H 0.059 0.941 48 H 0.081 0.919 49 H 0.121 0.879 50 H 0.058 0.942 51 H 0.075 0.925 52 H 0.069 0.931 53 H 0.090 0.910 54 H 0.082 0.918 55 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.333 -25.430 -10.051 28.068 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.290 6.290 3 C 0.022 3.978 4 H 0.128 0.872 5 C 0.276 3.724 6 O -0.456 6.456 7 N -0.368 5.368 8 C 0.006 3.994 9 C -0.102 4.102 10 H 0.111 0.889 11 C -0.143 4.143 12 C -0.141 4.141 13 C -0.105 4.105 14 H 0.071 0.929 15 C 0.027 3.973 16 N -0.387 5.387 17 C -0.379 4.379 18 H 0.091 0.909 19 C -0.269 4.269 20 N -0.621 5.621 21 Si 0.803 3.197 22 H -0.203 1.203 23 H -0.221 1.221 24 H -0.205 1.205 25 C -0.140 4.140 26 C -0.144 4.144 27 C -0.128 4.128 28 C -0.174 4.174 29 C -0.174 4.174 30 C -0.160 4.160 31 H 0.084 0.916 32 H 0.115 0.885 33 H 0.050 0.950 34 H 0.251 0.749 35 H 0.071 0.929 36 H 0.083 0.917 37 H 0.092 0.908 38 H 0.070 0.930 39 H 0.056 0.944 40 H 0.083 0.917 41 H 0.031 0.969 42 H 0.037 0.963 43 H 0.206 0.794 44 H 0.060 0.940 45 H 0.083 0.917 46 H 0.090 0.910 47 H 0.078 0.922 48 H 0.100 0.900 49 H 0.139 0.861 50 H 0.077 0.923 51 H 0.093 0.907 52 H 0.087 0.913 53 H 0.109 0.891 54 H 0.101 0.899 55 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 6.414 -26.016 -9.382 28.390 hybrid contribution -0.806 1.645 0.064 1.833 sum 5.608 -24.371 -9.318 26.688 Atomic orbital electron populations 1.23001 0.79765 1.03844 1.00558 1.87945 1.20992 1.25768 1.94306 1.22014 0.98260 0.87001 0.90572 0.87167 1.21838 0.76367 0.81649 0.92588 1.90687 1.53357 1.53398 1.48120 1.46003 1.66586 1.14103 1.10105 1.21338 1.00201 0.95155 0.82713 1.21310 0.98738 0.91727 0.98474 0.88926 1.21556 0.97689 0.93603 1.01492 1.21412 1.00522 0.96096 0.96021 1.21234 0.98601 0.93334 0.97295 0.92916 1.20889 0.90395 0.89653 0.96344 1.42600 1.09585 1.02813 1.83697 1.19620 0.95601 0.84631 1.38004 0.90876 1.25572 0.95584 1.02494 1.03266 1.69810 1.01531 1.35161 1.55563 0.85205 0.76410 0.80070 0.78046 1.20267 1.22090 1.20529 1.21429 0.97193 0.93907 1.01449 1.21448 1.01445 0.95865 0.95600 1.22847 0.93355 1.00267 0.96350 1.22860 0.99178 0.97835 0.97545 1.22844 0.98295 1.00951 0.95350 1.22861 0.98475 1.00462 0.94222 0.91639 0.88531 0.95017 0.74895 0.92892 0.91719 0.90821 0.92952 0.94406 0.91709 0.96917 0.96264 0.79389 0.94014 0.91702 0.90993 0.92246 0.90018 0.86134 0.92338 0.90663 0.91252 0.89148 0.89949 0.89710 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.36 10.80 113.37 1.22 1.58 16 2 O -0.37 -7.19 8.01 -129.99 -1.04 -8.23 16 3 C 0.08 1.29 2.53 29.85 0.08 1.37 16 4 H 0.11 1.20 7.78 -2.39 -0.02 1.18 16 5 C 0.49 10.35 7.17 87.66 0.63 10.98 16 6 O -0.58 -17.82 16.51 15.95 0.26 -17.56 16 7 N -0.71 -11.54 5.19 -463.05 -2.40 -13.95 16 8 C 0.13 2.35 5.06 86.38 0.44 2.79 16 9 C -0.08 -1.41 2.23 -10.79 -0.02 -1.43 16 10 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 11 C -0.11 -2.23 5.08 30.60 0.16 -2.07 16 12 C -0.10 -2.92 5.08 30.59 0.16 -2.77 16 13 C -0.09 -2.63 2.22 -10.79 -0.02 -2.65 16 14 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 15 C 0.15 6.13 5.65 86.38 0.49 6.62 16 16 N -0.74 -38.25 5.33 -343.44 -1.83 -40.08 16 17 C -0.25 -13.97 9.99 84.03 0.84 -13.13 16 18 H 0.07 3.98 7.83 -2.91 -0.02 3.96 16 19 C -0.08 -4.47 5.50 84.86 0.47 -4.00 16 20 N -0.97 -59.69 13.06 21.65 0.28 -59.41 16 21 Si 0.97 46.31 29.55 68.60 2.03 48.33 16 22 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 23 H -0.29 -14.07 7.11 99.48 0.71 -13.36 16 24 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 25 C -0.10 -2.29 5.20 30.58 0.16 -2.13 16 26 C -0.11 -1.93 5.20 30.58 0.16 -1.77 16 27 C -0.11 -1.33 3.54 -10.27 -0.04 -1.37 16 28 C -0.14 -2.07 7.50 31.21 0.23 -1.84 16 29 C -0.14 -1.48 8.09 31.21 0.25 -1.23 16 30 C -0.12 -1.22 7.55 31.12 0.23 -0.98 16 31 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 32 H 0.10 1.21 8.14 -2.39 -0.02 1.19 16 33 H 0.03 0.53 8.14 -2.38 -0.02 0.51 16 34 H 0.41 4.44 7.50 -92.71 -0.70 3.74 16 35 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 36 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 37 H 0.07 1.30 7.18 -2.38 -0.02 1.28 16 38 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 39 H 0.04 1.35 7.18 -2.38 -0.02 1.33 16 40 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 41 H 0.01 0.52 8.14 -2.39 -0.02 0.50 16 42 H 0.02 0.77 8.14 -2.38 -0.02 0.75 16 43 H 0.37 20.38 6.85 -92.71 -0.64 19.74 16 44 H 0.25 14.98 8.31 -92.70 -0.77 14.21 16 45 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 46 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 47 H 0.06 1.17 8.14 -2.39 -0.02 1.16 16 48 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 49 H 0.12 1.06 7.93 -2.39 -0.02 1.04 16 50 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 51 H 0.07 1.46 6.96 -2.39 -0.02 1.44 16 52 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 53 H 0.09 0.79 8.14 -2.38 -0.02 0.77 16 54 H 0.08 0.91 7.80 -2.39 -0.02 0.89 16 55 H 0.08 0.61 8.14 -2.39 -0.02 0.59 16 Total: -1.00 -73.53 427.36 2.25 -71.28 By element: Atomic # 1 Polarization: 32.12 SS G_CDS: -0.48 Total: 31.64 kcal Atomic # 6 Polarization: -17.46 SS G_CDS: 5.43 Total: -12.04 kcal Atomic # 7 Polarization: -109.49 SS G_CDS: -3.95 Total: -113.44 kcal Atomic # 8 Polarization: -25.00 SS G_CDS: -0.78 Total: -25.78 kcal Atomic # 14 Polarization: 46.31 SS G_CDS: 2.03 Total: 48.33 kcal Total: -73.53 2.25 -71.28 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569864363.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.377 kcal (2) G-P(sol) polarization free energy of solvation -73.528 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.246 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.283 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.660 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds