Wall clock time and date at job start Tue Mar 31 2020 22:59:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42907 * 113.99750 * 2 1 4 4 H 1.09005 * 109.46643 * 30.00103 * 3 2 1 5 5 C 1.50701 * 109.47060 * 269.99894 * 3 2 1 6 6 O 1.21274 * 120.00157 * 352.82793 * 5 3 2 7 7 N 1.34772 * 119.99659 * 172.82768 * 5 3 2 8 8 C 1.47025 * 125.64742 * 175.05979 * 7 5 3 9 9 C 1.54369 * 107.28607 * 178.94263 * 8 7 5 10 10 C 1.55155 * 102.92565 * 337.86133 * 9 8 7 11 11 H 1.08998 * 111.00647 * 277.36376 * 10 9 8 12 12 C 1.52998 * 111.00630 * 153.54700 * 10 9 8 13 13 C 1.53000 * 109.47101 * 69.58363 * 12 10 9 14 14 N 1.46501 * 109.46966 * 180.02562 * 13 12 10 15 15 C 1.36939 * 119.99986 * 179.72549 * 14 13 12 16 16 H 1.08005 * 119.99880 * 359.97438 * 15 14 13 17 17 C 1.38812 * 120.00288 * 179.97438 * 15 14 13 18 18 N 1.31619 * 119.99880 * 0.02562 * 17 15 14 19 19 Si 1.86794 * 120.00141 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.47255 * 89.99872 * 19 17 15 21 21 H 1.48501 * 109.46986 * 209.99865 * 19 17 15 22 22 H 1.48507 * 109.47270 * 329.99535 * 19 17 15 23 23 C 1.47432 * 125.65020 * 355.10161 * 7 5 3 24 24 C 1.52998 * 109.46677 * 149.99863 * 3 2 1 25 25 C 1.53000 * 109.47352 * 57.02403 * 24 3 2 26 26 C 1.52998 * 109.47352 * 179.97438 * 25 24 3 27 27 C 1.53005 * 109.47154 * 59.99483 * 26 25 24 28 28 C 1.53004 * 109.47052 * 300.00109 * 27 26 25 29 29 C 1.53000 * 109.47033 * 60.00455 * 28 27 26 30 30 H 1.08999 * 109.47013 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47145 * 300.00001 * 1 2 3 32 32 H 1.09001 * 109.46919 * 60.00086 * 1 2 3 33 33 H 1.08998 * 109.88162 * 298.39143 * 8 7 5 34 34 H 1.08999 * 109.87938 * 59.56262 * 8 7 5 35 35 H 1.09003 * 110.75612 * 219.49460 * 9 8 7 36 36 H 1.08999 * 110.70675 * 96.20680 * 9 8 7 37 37 H 1.09007 * 109.47140 * 309.58342 * 12 10 9 38 38 H 1.09002 * 109.47059 * 189.58658 * 12 10 9 39 39 H 1.08994 * 109.47446 * 60.00041 * 13 12 10 40 40 H 1.08996 * 109.46987 * 299.99962 * 13 12 10 41 41 H 0.97005 * 120.00016 * 0.02562 * 14 13 12 42 42 H 0.97000 * 119.99993 * 180.02562 * 18 17 15 43 43 H 1.08997 * 110.36776 * 85.25492 * 23 7 5 44 44 H 1.08999 * 110.45818 * 322.98073 * 23 7 5 45 45 H 1.09008 * 109.46645 * 177.02361 * 24 3 2 46 46 H 1.09008 * 109.46687 * 299.99581 * 25 24 3 47 47 H 1.08992 * 109.47080 * 59.99350 * 25 24 3 48 48 H 1.09008 * 109.46645 * 299.99958 * 26 25 24 49 49 H 1.08997 * 109.47533 * 179.97438 * 26 25 24 50 50 H 1.09004 * 109.46953 * 180.02562 * 27 26 25 51 51 H 1.08995 * 109.46784 * 60.00569 * 27 26 25 52 52 H 1.08995 * 109.47176 * 299.99928 * 28 27 26 53 53 H 1.09000 * 109.46448 * 180.02562 * 28 27 26 54 54 H 1.08999 * 109.46891 * 179.97438 * 29 28 27 55 55 H 1.08995 * 109.47332 * 59.99217 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 1 1.3449 1.9994 0.5139 5 6 2.2146 1.7644 -1.4208 6 8 2.0170 0.9982 -2.3399 7 7 2.6168 3.0263 -1.6701 8 6 2.9520 3.5733 -2.9930 9 6 3.3310 5.0564 -2.7935 10 6 2.6442 5.4123 -1.4486 11 1 1.5935 5.6598 -1.5999 12 6 3.3778 6.5550 -0.7437 13 6 3.1690 7.8538 -1.5249 14 7 3.8720 8.9479 -0.8503 15 6 3.8324 10.2128 -1.3734 16 1 3.2833 10.4037 -2.2836 17 6 4.4980 11.2495 -0.7339 18 7 5.1676 11.0167 0.3751 19 14 4.4446 12.9748 -1.4479 20 1 3.2809 13.7070 -0.8867 21 1 5.6965 13.6936 -1.0997 22 1 4.3139 12.8954 -2.9251 23 6 2.7945 4.0867 -0.6613 24 6 3.3589 1.2633 0.7213 25 6 4.2672 0.2347 0.0446 26 6 5.6161 0.1929 0.7655 27 6 5.4006 -0.2009 2.2282 28 6 4.4923 0.8278 2.9049 29 6 3.1434 0.8695 2.1840 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 3.7957 3.0285 -3.4165 34 1 2.0892 3.4977 -3.6548 35 1 2.9340 5.6688 -3.6032 36 1 4.4123 5.1709 -2.7165 37 1 4.4427 6.3276 -0.6946 38 1 2.9842 6.6712 0.2662 39 1 2.1042 8.0813 -1.5740 40 1 3.5626 7.7376 -2.5347 41 1 4.3691 8.7754 -0.0353 42 1 5.6323 11.7413 0.8222 43 1 3.7861 4.0219 -0.2133 44 1 2.0259 4.0132 0.1081 45 1 3.8264 2.2469 0.6753 46 1 3.7996 -0.7489 0.0907 47 1 4.4210 0.5155 -0.9972 48 1 6.0834 1.1767 0.7191 49 1 6.2630 -0.5402 0.2838 50 1 6.3616 -0.2302 2.7419 51 1 4.9333 -1.1845 2.2746 52 1 4.9597 1.8114 2.8585 53 1 4.3393 0.5475 3.9470 54 1 2.4963 1.6020 2.6663 55 1 2.6762 -0.1141 2.2304 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001570024419.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:59:48 Heat of formation + Delta-G solvation = -116.818376 kcal Electronic energy + Delta-G solvation = -30811.979368 eV Core-core repulsion = 26847.096058 eV Total energy + Delta-G solvation = -3964.883311 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.70352 -39.82184 -38.79842 -37.87190 -36.77485 -34.52897 -33.32373 -32.35330 -31.63486 -30.82603 -28.75780 -28.23865 -26.95472 -25.69545 -24.10111 -23.45772 -23.11749 -22.47651 -21.29004 -20.56216 -20.34136 -19.10807 -18.37107 -17.74523 -17.26967 -16.97346 -16.66341 -16.27343 -15.76871 -15.73408 -15.35720 -15.20335 -15.16290 -14.98045 -14.85431 -14.64086 -14.40722 -14.25405 -13.95694 -13.86698 -13.29696 -13.14909 -13.07450 -13.02088 -12.82468 -12.81447 -12.76076 -12.33097 -12.31621 -12.15589 -12.00520 -11.97322 -11.93848 -11.73077 -11.59450 -11.50936 -11.46503 -11.30616 -11.11908 -10.91960 -10.89240 -10.29672 -9.73307 -8.96506 -7.93795 -5.21817 1.46105 1.48972 1.50049 1.58472 1.82451 2.57526 2.75345 3.28641 3.40284 3.47810 3.59329 3.66467 3.77952 3.82592 3.90083 4.06407 4.17885 4.25287 4.29474 4.32005 4.40019 4.41069 4.46054 4.49798 4.51436 4.55536 4.59299 4.64115 4.66703 4.67259 4.73428 4.79353 4.80695 4.86719 4.91677 4.96447 5.01618 5.03513 5.16293 5.22562 5.26055 5.29069 5.30026 5.31645 5.38579 5.42600 5.43283 5.49569 5.52944 5.62221 5.99426 6.29786 6.42610 7.05178 7.35891 8.13800 8.35624 9.29821 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.014242 B = 0.002298 C = 0.002117 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1965.594558 B =12183.033618 C =13222.577917 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.371 6.371 3 C 0.084 3.916 4 H 0.107 0.893 5 C 0.503 3.497 6 O -0.576 6.576 7 N -0.614 5.614 8 C 0.107 3.893 9 C -0.121 4.121 10 C -0.085 4.085 11 H 0.090 0.910 12 C -0.100 4.100 13 C 0.151 3.849 14 N -0.749 5.749 15 C -0.245 4.245 16 H 0.074 0.926 17 C -0.076 4.076 18 N -0.969 5.969 19 Si 0.971 3.029 20 H -0.287 1.287 21 H -0.295 1.295 22 H -0.271 1.271 23 C 0.101 3.899 24 C -0.075 4.075 25 C -0.105 4.105 26 C -0.117 4.117 27 C -0.118 4.118 28 C -0.118 4.118 29 C -0.106 4.106 30 H 0.100 0.900 31 H 0.066 0.934 32 H 0.028 0.972 33 H 0.061 0.939 34 H 0.061 0.939 35 H 0.088 0.912 36 H 0.080 0.920 37 H 0.065 0.935 38 H 0.070 0.930 39 H 0.017 0.983 40 H 0.022 0.978 41 H 0.375 0.625 42 H 0.251 0.749 43 H 0.086 0.914 44 H 0.098 0.902 45 H 0.096 0.904 46 H 0.059 0.941 47 H 0.033 0.967 48 H 0.062 0.938 49 H 0.060 0.940 50 H 0.068 0.932 51 H 0.059 0.941 52 H 0.065 0.935 53 H 0.073 0.927 54 H 0.077 0.923 55 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.848 -24.681 4.017 25.681 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.288 6.288 3 C 0.023 3.977 4 H 0.125 0.875 5 C 0.293 3.707 6 O -0.455 6.455 7 N -0.349 5.349 8 C -0.015 4.015 9 C -0.159 4.159 10 C -0.105 4.105 11 H 0.108 0.892 12 C -0.138 4.138 13 C 0.025 3.975 14 N -0.392 5.392 15 C -0.377 4.377 16 H 0.092 0.908 17 C -0.268 4.268 18 N -0.620 5.620 19 Si 0.800 3.200 20 H -0.214 1.214 21 H -0.222 1.222 22 H -0.195 1.195 23 C -0.021 4.021 24 C -0.094 4.094 25 C -0.142 4.142 26 C -0.155 4.155 27 C -0.156 4.156 28 C -0.156 4.156 29 C -0.143 4.143 30 H 0.119 0.881 31 H 0.085 0.915 32 H 0.047 0.953 33 H 0.079 0.921 34 H 0.079 0.921 35 H 0.107 0.893 36 H 0.098 0.902 37 H 0.084 0.916 38 H 0.089 0.911 39 H 0.035 0.965 40 H 0.040 0.960 41 H 0.206 0.794 42 H 0.060 0.940 43 H 0.104 0.896 44 H 0.116 0.884 45 H 0.114 0.886 46 H 0.078 0.922 47 H 0.052 0.948 48 H 0.081 0.919 49 H 0.079 0.921 50 H 0.087 0.913 51 H 0.078 0.922 52 H 0.084 0.916 53 H 0.092 0.908 54 H 0.095 0.905 55 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -5.938 -25.251 3.406 26.162 hybrid contribution 0.064 1.230 -0.530 1.341 sum -5.874 -24.021 2.877 24.895 Atomic orbital electron populations 1.23015 0.79715 1.04147 1.00362 1.87969 1.21126 1.25493 1.94239 1.22210 0.98295 0.86840 0.90355 0.87513 1.21597 0.76054 0.80126 0.92958 1.90674 1.52610 1.54319 1.47905 1.48653 1.66013 1.10307 1.09901 1.21963 1.00035 0.94523 0.84989 1.22722 1.01701 0.93164 0.98329 1.22200 1.00661 0.92960 0.94676 0.89169 1.21490 1.00559 0.92538 0.99242 1.20813 0.94480 0.87217 0.95014 1.42615 1.61424 1.05091 1.30021 1.19630 1.25268 0.86810 1.05961 0.90823 1.25540 1.00967 1.01936 0.98359 1.69800 1.39163 1.32418 1.20585 0.85181 0.76570 0.80163 0.78107 1.21391 1.22189 1.19546 1.22642 1.03278 0.85002 0.91188 1.21334 0.91328 1.00847 0.95900 1.21394 0.95941 0.99397 0.97498 1.21528 0.96061 1.01712 0.96189 1.21533 1.00047 0.99134 0.94840 1.21536 0.95048 0.99619 0.99386 1.21506 0.98036 1.02442 0.92353 0.88141 0.91535 0.95298 0.92064 0.92058 0.89328 0.90179 0.91580 0.91125 0.96463 0.96042 0.79359 0.93991 0.89620 0.88423 0.88635 0.92243 0.94777 0.91884 0.92121 0.91329 0.92197 0.91618 0.90811 0.90461 0.91598 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.37 10.81 113.37 1.23 1.60 16 2 O -0.37 -7.86 8.55 -130.04 -1.11 -8.97 16 3 C 0.08 1.57 1.61 29.85 0.05 1.62 16 4 H 0.11 1.46 7.08 -2.38 -0.02 1.44 16 5 C 0.50 12.48 6.03 87.66 0.53 13.01 16 6 O -0.58 -19.32 16.85 15.93 0.27 -19.06 16 7 N -0.61 -13.07 3.33 -811.69 -2.70 -15.77 16 8 C 0.11 2.32 6.87 86.74 0.60 2.91 16 9 C -0.12 -2.42 5.75 31.80 0.18 -2.23 16 10 C -0.09 -1.69 3.04 -9.40 -0.03 -1.72 16 11 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 12 C -0.10 -2.61 4.83 30.59 0.15 -2.46 16 13 C 0.15 5.48 6.14 86.38 0.53 6.01 16 14 N -0.75 -36.68 5.60 -343.46 -1.92 -38.60 16 15 C -0.24 -13.43 9.99 84.03 0.84 -12.59 16 16 H 0.07 3.89 7.83 -2.91 -0.02 3.87 16 17 C -0.08 -4.29 5.50 84.86 0.47 -3.82 16 18 N -0.97 -58.26 13.06 21.65 0.28 -57.98 16 19 Si 0.97 45.42 29.55 68.60 2.03 47.44 16 20 H -0.29 -13.18 7.11 99.48 0.71 -12.47 16 21 H -0.30 -13.90 7.11 99.48 0.71 -13.20 16 22 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 23 C 0.10 1.68 5.11 86.85 0.44 2.12 16 24 C -0.08 -1.21 1.96 -10.79 -0.02 -1.23 16 25 C -0.10 -2.04 4.82 30.59 0.15 -1.90 16 26 C -0.12 -1.87 5.92 30.60 0.18 -1.69 16 27 C -0.12 -1.56 5.92 30.60 0.18 -1.38 16 28 C -0.12 -1.42 5.92 30.60 0.18 -1.23 16 29 C -0.11 -1.35 5.09 30.60 0.16 -1.20 16 30 H 0.10 1.30 8.14 -2.39 -0.02 1.28 16 31 H 0.07 0.71 8.08 -2.39 -0.02 0.69 16 32 H 0.03 0.53 8.14 -2.39 -0.02 0.51 16 33 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 34 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 35 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 36 H 0.08 1.64 7.96 -2.39 -0.02 1.62 16 37 H 0.07 1.76 8.04 -2.38 -0.02 1.74 16 38 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 39 H 0.02 0.64 8.14 -2.39 -0.02 0.62 16 40 H 0.02 0.78 7.63 -2.39 -0.02 0.76 16 41 H 0.37 19.37 7.67 -92.70 -0.71 18.66 16 42 H 0.25 14.65 8.31 -92.71 -0.77 13.88 16 43 H 0.09 1.31 7.01 -2.39 -0.02 1.29 16 44 H 0.10 1.23 7.30 -2.39 -0.02 1.22 16 45 H 0.10 1.41 5.94 -2.38 -0.01 1.39 16 46 H 0.06 1.32 7.61 -2.38 -0.02 1.30 16 47 H 0.03 0.82 7.31 -2.39 -0.02 0.80 16 48 H 0.06 0.99 8.14 -2.38 -0.02 0.97 16 49 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 50 H 0.07 0.81 8.14 -2.38 -0.02 0.79 16 51 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 52 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 53 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 54 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 55 H 0.07 0.95 7.77 -2.39 -0.02 0.93 16 Total: -1.00 -71.12 421.24 2.78 -68.34 By element: Atomic # 1 Polarization: 28.66 SS G_CDS: 0.13 Total: 28.79 kcal Atomic # 6 Polarization: -10.00 SS G_CDS: 5.81 Total: -4.20 kcal Atomic # 7 Polarization: -108.01 SS G_CDS: -4.34 Total: -112.35 kcal Atomic # 8 Polarization: -27.19 SS G_CDS: -0.84 Total: -28.03 kcal Atomic # 14 Polarization: 45.42 SS G_CDS: 2.03 Total: 47.44 kcal Total: -71.12 2.78 -68.34 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570024419.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.475 kcal (2) G-P(sol) polarization free energy of solvation -71.123 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.598 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.779 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.344 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.818 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds