Wall clock time and date at job start Tue Mar 31 2020 22:59:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42902 * 113.99763 * 2 1 4 4 H 1.08991 * 109.47081 * 30.00270 * 3 2 1 5 5 C 1.50702 * 109.47061 * 269.99998 * 3 2 1 6 6 O 1.21285 * 119.99697 * 349.73363 * 5 3 2 7 7 N 1.34773 * 119.99989 * 169.72835 * 5 3 2 8 8 C 1.47019 * 125.64793 * 354.82246 * 7 5 3 9 9 C 1.54323 * 107.26809 * 181.10089 * 8 7 5 10 10 C 1.55152 * 102.94496 * 22.19341 * 9 8 7 11 11 H 1.09003 * 111.00150 * 82.60930 * 10 9 8 12 12 C 1.52992 * 111.00644 * 206.41864 * 10 9 8 13 13 C 1.53000 * 109.47708 * 293.54590 * 12 10 9 14 14 N 1.46491 * 109.47579 * 179.97438 * 13 12 10 15 15 C 1.36940 * 120.00263 * 180.02562 * 14 13 12 16 16 H 1.08007 * 119.99694 * 0.02562 * 15 14 13 17 17 C 1.38809 * 120.00152 * 180.02562 * 15 14 13 18 18 N 1.31613 * 120.00253 * 359.97438 * 17 15 14 19 19 Si 1.86807 * 119.99881 * 180.27469 * 17 15 14 20 20 H 1.48494 * 109.46699 * 269.72125 * 19 17 15 21 21 H 1.48501 * 109.46954 * 29.71910 * 19 17 15 22 22 H 1.48496 * 109.46690 * 149.72236 * 19 17 15 23 23 C 1.47430 * 125.64679 * 174.87114 * 7 5 3 24 24 C 1.53004 * 109.46828 * 150.00418 * 3 2 1 25 25 C 1.52991 * 109.47265 * 54.40272 * 24 3 2 26 26 C 1.53004 * 109.47265 * 180.02562 * 25 24 3 27 27 C 1.53004 * 109.46804 * 59.99637 * 26 25 24 28 28 C 1.52991 * 109.47505 * 300.00216 * 27 26 25 29 29 C 1.52999 * 109.46917 * 294.40236 * 24 3 2 30 30 H 1.09002 * 109.46733 * 299.99690 * 1 2 3 31 31 H 1.08991 * 109.47280 * 60.00208 * 1 2 3 32 32 H 1.09009 * 109.46955 * 180.02562 * 1 2 3 33 33 H 1.09005 * 109.88201 * 61.68976 * 8 7 5 34 34 H 1.08996 * 110.01377 * 300.59158 * 8 7 5 35 35 H 1.09001 * 110.72652 * 263.82956 * 9 8 7 36 36 H 1.09006 * 110.71626 * 140.55825 * 9 8 7 37 37 H 1.09002 * 109.47076 * 173.54633 * 12 10 9 38 38 H 1.09004 * 109.47457 * 53.54946 * 12 10 9 39 39 H 1.09002 * 109.46817 * 59.99885 * 13 12 10 40 40 H 1.09001 * 109.47313 * 300.00283 * 13 12 10 41 41 H 0.97006 * 120.00149 * 0.02562 * 14 13 12 42 42 H 0.97002 * 120.00568 * 180.02562 * 18 17 15 43 43 H 1.09002 * 110.36125 * 36.99412 * 23 7 5 44 44 H 1.08996 * 110.36648 * 274.66946 * 23 7 5 45 45 H 1.09000 * 109.46846 * 174.40870 * 24 3 2 46 46 H 1.09000 * 109.47677 * 300.00089 * 25 24 3 47 47 H 1.09001 * 109.47640 * 60.00298 * 25 24 3 48 48 H 1.09009 * 109.46762 * 300.00366 * 26 25 24 49 49 H 1.08993 * 109.47366 * 180.02562 * 26 25 24 50 50 H 1.09001 * 109.46614 * 179.97438 * 27 26 25 51 51 H 1.09000 * 109.46635 * 60.00832 * 27 26 25 52 52 H 1.09000 * 109.47677 * 299.99978 * 28 27 26 53 53 H 1.09001 * 109.47640 * 179.97438 * 28 27 26 54 54 H 1.09003 * 109.47139 * 299.99937 * 29 24 3 55 55 H 1.08996 * 109.47182 * 60.00259 * 29 24 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3450 1.9993 0.5138 5 6 2.2145 1.7644 -1.4208 6 8 2.0714 0.9827 -2.3370 7 7 2.5561 3.0434 -1.6734 8 6 2.6568 4.1167 -0.6737 9 6 3.0481 5.4069 -1.4246 10 6 2.5936 5.1140 -2.8789 11 1 1.5298 5.3160 -3.0039 12 6 3.4227 5.9153 -3.8845 13 6 3.1287 7.4072 -3.7142 14 7 3.9231 8.1744 -4.6767 15 6 3.8257 9.5399 -4.7107 16 1 3.1635 10.0512 -4.0276 17 6 4.5779 10.2669 -5.6231 18 7 5.3852 9.6439 -6.4551 19 14 4.4508 12.1302 -5.6643 20 1 3.3804 12.5323 -6.6118 21 1 4.1245 12.6342 -4.3060 22 1 5.7462 12.7050 -6.1077 23 6 2.8896 3.5982 -2.9979 24 6 3.3590 1.2632 0.7212 25 6 4.2437 0.1890 0.0857 26 6 5.5922 0.1463 0.8073 27 6 5.3698 -0.1843 2.2846 28 6 4.4851 0.8900 2.9200 29 6 3.1371 0.9330 2.1985 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3633 -1.0278 0.0005 33 1 3.4231 3.8685 0.0608 34 1 1.6970 4.2542 -0.1759 35 1 4.1256 5.5663 -1.3821 36 1 2.5138 6.2662 -1.0192 37 1 3.1628 5.6071 -4.8972 38 1 4.4828 5.7317 -3.7097 39 1 3.3887 7.7154 -2.7015 40 1 2.0686 7.5909 -3.8891 41 1 4.5181 7.7152 -5.2900 42 1 5.9112 10.1519 -7.0925 43 1 2.2614 3.1482 -3.7667 44 1 3.9433 3.4340 -3.2236 45 1 3.8474 2.2339 0.6353 46 1 3.7552 -0.7817 0.1716 47 1 4.4018 0.4242 -0.9668 48 1 6.0809 1.1169 0.7218 49 1 6.2226 -0.6187 0.3543 50 1 6.3305 -0.2151 2.7985 51 1 4.8811 -1.1548 2.3701 52 1 4.9737 1.8606 2.8346 53 1 4.3263 0.6543 3.9724 54 1 2.5068 1.6984 2.6513 55 1 2.6487 -0.0376 2.2845 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001570024420.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:59:52 Heat of formation + Delta-G solvation = -116.732265 kcal Electronic energy + Delta-G solvation = -30560.544509 eV Core-core repulsion = 26595.664932 eV Total energy + Delta-G solvation = -3964.879576 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.69158 -39.84839 -38.77813 -37.87130 -36.81666 -34.64611 -33.22881 -32.34253 -31.63620 -30.61187 -29.27174 -28.09251 -26.90880 -25.51523 -24.18382 -23.47865 -23.15679 -22.48587 -21.24318 -20.66856 -20.30231 -19.12185 -18.41410 -17.76573 -17.25779 -16.68704 -16.67221 -16.41465 -15.91238 -15.69464 -15.38625 -15.22973 -15.14550 -15.01286 -14.89566 -14.64371 -14.41345 -14.26611 -13.93976 -13.71228 -13.36606 -13.13965 -13.08781 -13.01054 -12.84605 -12.82472 -12.77776 -12.42740 -12.29207 -12.16553 -11.99084 -11.96550 -11.94580 -11.64932 -11.60140 -11.55945 -11.49421 -11.29716 -11.12015 -10.92102 -10.90995 -10.29513 -9.70995 -8.98950 -7.94639 -5.23713 1.46825 1.48022 1.50066 1.58510 1.82122 2.56876 2.75402 3.29202 3.39367 3.55105 3.60646 3.65158 3.72711 3.81490 3.90148 4.04819 4.16917 4.24522 4.29552 4.34202 4.37969 4.39885 4.45877 4.48617 4.50361 4.50930 4.60332 4.63572 4.66801 4.67187 4.73976 4.78048 4.80657 4.84601 4.88506 4.96391 5.02290 5.09544 5.16870 5.20479 5.27548 5.29754 5.30425 5.31839 5.38586 5.38958 5.43110 5.46637 5.50775 5.62450 5.99611 6.28050 6.45815 7.06203 7.33680 8.11313 8.32753 9.29228 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.017826 B = 0.002037 C = 0.001944 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1570.347309 B =13743.689435 C =14398.985587 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.373 6.373 3 C 0.087 3.913 4 H 0.111 0.889 5 C 0.500 3.500 6 O -0.579 6.579 7 N -0.615 5.615 8 C 0.094 3.906 9 C -0.123 4.123 10 C -0.083 4.083 11 H 0.088 0.912 12 C -0.103 4.103 13 C 0.155 3.845 14 N -0.751 5.751 15 C -0.244 4.244 16 H 0.078 0.922 17 C -0.080 4.080 18 N -0.972 5.972 19 Si 0.975 3.025 20 H -0.288 1.288 21 H -0.266 1.266 22 H -0.296 1.296 23 C 0.109 3.891 24 C -0.075 4.075 25 C -0.107 4.107 26 C -0.118 4.118 27 C -0.119 4.119 28 C -0.117 4.117 29 C -0.106 4.106 30 H 0.069 0.931 31 H 0.027 0.973 32 H 0.099 0.901 33 H 0.092 0.908 34 H 0.092 0.908 35 H 0.079 0.921 36 H 0.099 0.901 37 H 0.054 0.946 38 H 0.063 0.937 39 H 0.032 0.968 40 H 0.017 0.983 41 H 0.372 0.628 42 H 0.251 0.749 43 H 0.060 0.940 44 H 0.065 0.935 45 H 0.098 0.902 46 H 0.058 0.942 47 H 0.030 0.970 48 H 0.063 0.937 49 H 0.057 0.943 50 H 0.069 0.931 51 H 0.058 0.942 52 H 0.068 0.932 53 H 0.075 0.925 54 H 0.082 0.918 55 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.945 -20.122 24.510 32.464 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.290 6.290 3 C 0.025 3.975 4 H 0.129 0.871 5 C 0.290 3.710 6 O -0.458 6.458 7 N -0.350 5.350 8 C -0.028 4.028 9 C -0.161 4.161 10 C -0.103 4.103 11 H 0.107 0.893 12 C -0.141 4.141 13 C 0.029 3.971 14 N -0.394 5.394 15 C -0.376 4.376 16 H 0.096 0.904 17 C -0.272 4.272 18 N -0.623 5.623 19 Si 0.804 3.196 20 H -0.215 1.215 21 H -0.191 1.191 22 H -0.223 1.223 23 C -0.014 4.014 24 C -0.093 4.093 25 C -0.144 4.144 26 C -0.155 4.155 27 C -0.156 4.156 28 C -0.154 4.154 29 C -0.143 4.143 30 H 0.088 0.912 31 H 0.045 0.955 32 H 0.117 0.883 33 H 0.110 0.890 34 H 0.110 0.890 35 H 0.098 0.902 36 H 0.118 0.882 37 H 0.073 0.927 38 H 0.082 0.918 39 H 0.050 0.950 40 H 0.035 0.965 41 H 0.204 0.796 42 H 0.060 0.940 43 H 0.078 0.922 44 H 0.083 0.917 45 H 0.115 0.885 46 H 0.077 0.923 47 H 0.049 0.951 48 H 0.082 0.918 49 H 0.076 0.924 50 H 0.087 0.913 51 H 0.076 0.924 52 H 0.087 0.913 53 H 0.094 0.906 54 H 0.100 0.900 55 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -7.019 -20.652 24.155 32.546 hybrid contribution 0.130 0.899 -1.430 1.694 sum -6.889 -19.753 22.725 30.888 Atomic orbital electron populations 1.23020 0.79710 1.04127 1.00410 1.87978 1.21138 1.25645 1.94211 1.22216 0.98407 0.86825 0.90008 0.87130 1.21733 0.75910 0.80300 0.93092 1.90687 1.52725 1.54144 1.48281 1.48673 1.67413 1.08769 1.10141 1.22436 1.03346 0.85719 0.91251 1.22748 1.02766 0.97214 0.93354 1.22150 1.00534 0.91933 0.95692 0.89340 1.21494 0.99869 0.93947 0.98804 1.20793 0.93625 0.90284 0.92438 1.42662 1.51166 1.03481 1.42081 1.19668 1.19317 0.84412 1.14176 0.90383 1.25622 0.99892 1.02672 0.99015 1.69821 1.31623 1.35921 1.24934 0.85116 0.76401 0.80063 0.78057 1.21511 1.19079 1.22260 1.22224 1.00267 0.93489 0.85374 1.21343 0.91317 1.00572 0.96080 1.21395 0.96159 0.99309 0.97562 1.21531 0.95990 1.01762 0.96236 1.21536 1.00243 0.99171 0.94661 1.21519 0.95042 0.99314 0.99545 1.21516 0.98149 1.02694 0.91944 0.91218 0.95451 0.88276 0.89009 0.88952 0.90230 0.88206 0.92712 0.91845 0.94965 0.96471 0.79649 0.94040 0.92179 0.91652 0.88455 0.92292 0.95131 0.91797 0.92415 0.91274 0.92350 0.91328 0.90644 0.89982 0.91771 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.35 10.81 113.37 1.23 1.58 16 2 O -0.37 -7.69 8.56 -130.15 -1.11 -8.80 16 3 C 0.09 1.52 1.59 29.85 0.05 1.57 16 4 H 0.11 1.27 7.54 -2.39 -0.02 1.26 16 5 C 0.50 12.51 6.13 87.66 0.54 13.04 16 6 O -0.58 -20.23 16.76 15.79 0.26 -19.96 16 7 N -0.62 -13.17 3.33 -811.80 -2.70 -15.87 16 8 C 0.09 1.30 6.13 86.73 0.53 1.83 16 9 C -0.12 -2.10 5.59 31.78 0.18 -1.92 16 10 C -0.08 -1.88 3.07 -9.41 -0.03 -1.91 16 11 H 0.09 1.96 8.14 -2.39 -0.02 1.94 16 12 C -0.10 -3.08 4.84 30.59 0.15 -2.93 16 13 C 0.15 5.82 6.11 86.38 0.53 6.35 16 14 N -0.75 -38.09 5.60 -343.46 -1.92 -40.02 16 15 C -0.24 -13.57 9.99 84.03 0.84 -12.73 16 16 H 0.08 4.12 7.83 -2.91 -0.02 4.10 16 17 C -0.08 -4.61 5.50 84.86 0.47 -4.15 16 18 N -0.97 -59.98 13.06 21.65 0.28 -59.70 16 19 Si 0.97 45.89 29.55 68.60 2.03 47.92 16 20 H -0.29 -13.35 7.11 99.48 0.71 -12.65 16 21 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 22 H -0.30 -14.04 7.11 99.48 0.71 -13.34 16 23 C 0.11 2.67 6.40 86.85 0.56 3.23 16 24 C -0.07 -1.08 1.95 -10.80 -0.02 -1.10 16 25 C -0.11 -2.04 4.82 30.59 0.15 -1.90 16 26 C -0.12 -1.78 5.92 30.60 0.18 -1.60 16 27 C -0.12 -1.38 5.92 30.59 0.18 -1.20 16 28 C -0.12 -1.08 5.92 30.57 0.18 -0.90 16 29 C -0.11 -1.08 5.10 30.58 0.16 -0.93 16 30 H 0.07 0.65 8.09 -2.39 -0.02 0.63 16 31 H 0.03 0.49 8.14 -2.39 -0.02 0.47 16 32 H 0.10 1.25 8.14 -2.38 -0.02 1.23 16 33 H 0.09 0.93 6.03 -2.38 -0.01 0.92 16 34 H 0.09 0.88 8.10 -2.39 -0.02 0.86 16 35 H 0.08 1.44 8.01 -2.39 -0.02 1.42 16 36 H 0.10 1.49 8.14 -2.38 -0.02 1.47 16 37 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 38 H 0.06 1.94 8.11 -2.39 -0.02 1.92 16 39 H 0.03 1.15 7.51 -2.39 -0.02 1.14 16 40 H 0.02 0.66 8.14 -2.39 -0.02 0.64 16 41 H 0.37 20.23 7.67 -92.70 -0.71 19.52 16 42 H 0.25 14.99 8.31 -92.71 -0.77 14.22 16 43 H 0.06 1.68 7.99 -2.39 -0.02 1.66 16 44 H 0.07 1.66 8.04 -2.39 -0.02 1.64 16 45 H 0.10 1.22 5.74 -2.39 -0.01 1.21 16 46 H 0.06 1.30 7.55 -2.39 -0.02 1.28 16 47 H 0.03 0.75 7.40 -2.39 -0.02 0.74 16 48 H 0.06 0.93 8.14 -2.38 -0.02 0.91 16 49 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 50 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 51 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 52 H 0.07 0.58 8.14 -2.39 -0.02 0.56 16 53 H 0.07 0.55 8.14 -2.39 -0.02 0.53 16 54 H 0.08 0.54 8.14 -2.39 -0.02 0.52 16 55 H 0.06 0.80 7.84 -2.39 -0.02 0.78 16 Total: -1.00 -74.34 421.56 2.82 -71.52 By element: Atomic # 1 Polarization: 28.46 SS G_CDS: 0.13 Total: 28.59 kcal Atomic # 6 Polarization: -9.54 SS G_CDS: 5.86 Total: -3.68 kcal Atomic # 7 Polarization: -111.24 SS G_CDS: -4.34 Total: -115.58 kcal Atomic # 8 Polarization: -27.92 SS G_CDS: -0.85 Total: -28.77 kcal Atomic # 14 Polarization: 45.89 SS G_CDS: 2.03 Total: 47.92 kcal Total: -74.34 2.82 -71.52 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570024420.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.213 kcal (2) G-P(sol) polarization free energy of solvation -74.341 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.554 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.821 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.520 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.732 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds