Wall clock time and date at job start Tue Mar 31 2020 22:20:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42902 * 113.99969 * 2 1 4 4 C 1.52999 * 109.47324 * 180.02562 * 3 2 1 5 5 C 1.52993 * 109.47394 * 175.28147 * 4 3 2 6 6 C 1.50705 * 110.01781 * 62.80523 * 5 4 3 7 7 O 1.21277 * 120.00204 * 257.72531 * 6 5 4 8 8 N 1.34779 * 119.99502 * 77.72312 * 6 5 4 9 9 C 1.47428 * 125.64991 * 354.84660 * 8 6 5 10 10 C 1.54686 * 104.93828 * 204.07180 * 9 8 6 11 11 C 1.55156 * 101.67987 * 323.27743 * 10 9 8 12 12 C 1.47024 * 125.64568 * 175.15126 * 8 6 5 13 13 H 1.08997 * 109.88155 * 59.49083 * 12 8 6 14 14 C 1.53002 * 109.88314 * 298.47697 * 12 8 6 15 15 N 1.46498 * 109.46955 * 63.95500 * 14 12 8 16 16 C 1.46499 * 120.00021 * 80.76624 * 15 14 12 17 17 C 1.36933 * 120.00051 * 260.76423 * 15 14 12 18 18 H 1.07997 * 120.00318 * 23.04147 * 17 15 14 19 19 C 1.38819 * 120.00088 * 203.04759 * 17 15 14 20 20 N 1.31616 * 119.99859 * 359.81443 * 19 17 15 21 21 Si 1.86798 * 120.00136 * 179.81888 * 19 17 15 22 22 H 1.48498 * 109.47210 * 84.77420 * 21 19 17 23 23 H 1.48502 * 109.47051 * 204.77699 * 21 19 17 24 24 H 1.48500 * 109.47073 * 324.77770 * 21 19 17 25 25 C 1.54268 * 110.03343 * 301.36723 * 5 4 3 26 26 C 1.54887 * 104.19690 * 217.10599 * 25 5 4 27 27 C 1.54882 * 102.75234 * 37.94086 * 26 25 5 28 28 C 1.53873 * 110.03639 * 184.20256 * 5 4 3 29 29 H 1.09001 * 109.47061 * 60.00330 * 1 2 3 30 30 H 1.08999 * 109.47253 * 300.00014 * 1 2 3 31 31 H 1.09005 * 109.47056 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.46843 * 299.99894 * 3 2 1 33 33 H 1.08992 * 109.47358 * 59.99617 * 3 2 1 34 34 H 1.09001 * 109.46902 * 295.28162 * 4 3 2 35 35 H 1.09002 * 109.47062 * 55.27651 * 4 3 2 36 36 H 1.09004 * 110.36371 * 323.00270 * 9 8 6 37 37 H 1.08994 * 110.36546 * 85.32613 * 9 8 6 38 38 H 1.09007 * 111.10504 * 205.10329 * 10 9 8 39 39 H 1.09000 * 110.84969 * 81.33519 * 10 9 8 40 40 H 1.08994 * 110.71772 * 276.96963 * 11 10 9 41 41 H 1.09002 * 110.87126 * 153.77310 * 11 10 9 42 42 H 1.09000 * 109.46668 * 183.95554 * 14 12 8 43 43 H 1.08999 * 109.47216 * 303.95450 * 14 12 8 44 44 H 1.09001 * 109.47386 * 94.03501 * 16 15 14 45 45 H 1.09002 * 109.47459 * 214.03805 * 16 15 14 46 46 H 1.09005 * 109.47137 * 334.03687 * 16 15 14 47 47 H 0.97000 * 119.99955 * 180.02562 * 20 19 17 48 48 H 1.09003 * 110.48559 * 335.78428 * 25 5 4 49 49 H 1.09001 * 110.48676 * 98.42347 * 25 5 4 50 50 H 1.08998 * 110.75358 * 279.62204 * 26 25 5 51 51 H 1.09008 * 110.91279 * 156.33329 * 26 25 5 52 52 H 1.08997 * 110.49197 * 203.38146 * 27 26 25 53 53 H 1.08997 * 110.60154 * 80.78888 * 27 26 25 54 54 H 1.09007 * 110.03186 * 238.56914 * 28 5 4 55 55 H 1.09002 * 110.02918 * 359.97438 * 28 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 6 4.1573 2.5775 -0.1193 6 6 3.7844 3.4127 1.0785 7 8 2.9139 4.2519 0.9853 8 7 4.4184 3.2269 2.2532 9 6 5.4139 2.1768 2.5357 10 6 5.3663 1.9845 4.0698 11 6 5.1374 3.4382 4.5616 12 6 4.2272 4.0341 3.4671 13 1 3.1856 3.9854 3.7843 14 6 4.6203 5.4871 3.1931 15 7 3.7215 6.0543 2.1848 16 6 2.3964 6.5414 2.5758 17 6 4.1200 6.1291 0.8769 18 1 4.8910 5.4686 0.5086 19 6 3.5329 7.0540 0.0242 20 7 2.5907 7.8565 0.4721 21 14 4.0801 7.1595 -1.7587 22 1 3.3410 6.1540 -2.5637 23 1 3.7967 8.5193 -2.2838 24 1 5.5376 6.8889 -1.8460 25 6 3.6743 3.2634 -1.4140 26 6 4.9136 4.0462 -1.9142 27 6 6.0819 3.0848 -1.5831 28 6 5.6881 2.4640 -0.2269 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.6886 1.8464 -0.8900 33 1 1.6886 1.8464 0.8899 34 1 3.8633 0.7184 0.9284 35 1 3.8511 0.5727 -0.8455 36 1 5.1429 1.2509 2.0282 37 1 6.4071 2.5028 2.2272 38 1 6.3101 1.5890 4.4453 39 1 4.5344 1.3403 4.3544 40 1 6.0815 3.9801 4.6153 41 1 4.6341 3.4463 5.5284 42 1 4.5431 6.0642 4.1145 43 1 5.6462 5.5231 2.8267 44 1 2.4474 7.6115 2.7772 45 1 1.6884 6.3572 1.7677 46 1 2.0672 6.0181 3.4736 47 1 2.1803 8.5025 -0.1238 48 1 3.3709 2.5187 -2.1498 49 1 2.8523 3.9465 -1.2000 50 1 5.0213 4.9860 -1.3727 51 1 4.8533 4.2256 -2.9878 52 1 7.0169 3.6375 -1.4925 53 1 6.1696 2.3109 -2.3457 54 1 6.1613 3.0137 0.5868 55 1 5.9880 1.4166 -0.1941 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001570549471.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:20:35 Heat of formation + Delta-G solvation = -44.943216 kcal Electronic energy + Delta-G solvation = -34447.619500 eV Core-core repulsion = 30485.852930 eV Total energy + Delta-G solvation = -3961.766570 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.77007 -39.42059 -38.54204 -37.53922 -36.85612 -33.61710 -33.20219 -32.23435 -30.62161 -29.51758 -28.78533 -27.89866 -26.77749 -26.52614 -24.55040 -23.72125 -23.06190 -22.10038 -21.36044 -20.80799 -19.15251 -18.82176 -17.59052 -17.46473 -17.21190 -16.99036 -16.72221 -16.34303 -16.04582 -15.66363 -15.45510 -15.17444 -14.97907 -14.81215 -14.50447 -14.11013 -14.01708 -13.78607 -13.70011 -13.35105 -13.26435 -13.04749 -12.87170 -12.70642 -12.60696 -12.44208 -12.32620 -12.25054 -12.20742 -12.10504 -11.94387 -11.88870 -11.75346 -11.68647 -11.63505 -11.53206 -11.45245 -11.34926 -11.09283 -10.69089 -10.43086 -9.97949 -9.31320 -8.21179 -7.61201 -4.97973 1.36149 1.40819 1.45370 2.23172 2.47356 2.57973 2.72068 3.51663 3.58305 3.67296 3.74466 3.84515 3.91968 4.02864 4.08279 4.14870 4.19916 4.31502 4.37152 4.41999 4.44316 4.49337 4.51194 4.52378 4.59171 4.60944 4.71443 4.74074 4.76811 4.77408 4.84239 4.88275 4.95205 4.98503 5.03684 5.05082 5.06228 5.09294 5.17121 5.20963 5.22991 5.28322 5.31528 5.45146 5.47727 5.51104 5.59499 5.72948 5.86298 5.98261 6.11068 6.50778 7.12814 7.34956 7.94325 8.07392 8.52696 9.44049 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.008794 B = 0.006717 C = 0.005384 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3183.065365 B = 4167.731497 C = 5199.411788 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.403 6.403 3 C 0.067 3.933 4 C -0.087 4.087 5 C -0.063 4.063 6 C 0.499 3.501 7 O -0.492 6.492 8 N -0.619 5.619 9 C 0.092 3.908 10 C -0.121 4.121 11 C -0.116 4.116 12 C 0.119 3.881 13 H 0.031 0.969 14 C 0.141 3.859 15 N -0.600 5.600 16 C 0.207 3.793 17 C -0.143 4.143 18 H 0.061 0.939 19 C -0.068 4.068 20 N -0.955 5.955 21 Si 0.937 3.063 22 H -0.283 1.283 23 H -0.322 1.322 24 H -0.269 1.269 25 C -0.104 4.104 26 C -0.147 4.147 27 C -0.112 4.112 28 C -0.112 4.112 29 H 0.042 0.958 30 H 0.035 0.965 31 H 0.110 0.890 32 H 0.042 0.958 33 H 0.023 0.977 34 H 0.085 0.915 35 H 0.099 0.901 36 H 0.085 0.915 37 H 0.073 0.927 38 H 0.109 0.891 39 H 0.071 0.929 40 H 0.084 0.916 41 H 0.086 0.914 42 H 0.044 0.956 43 H 0.048 0.952 44 H -0.014 1.014 45 H 0.021 0.979 46 H -0.003 1.003 47 H 0.232 0.768 48 H 0.083 0.917 49 H 0.043 0.957 50 H 0.045 0.955 51 H 0.061 0.939 52 H 0.066 0.934 53 H 0.091 0.909 54 H 0.069 0.931 55 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.493 -20.026 3.522 21.670 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.322 6.322 3 C -0.009 4.009 4 C -0.125 4.125 5 C -0.066 4.066 6 C 0.286 3.714 7 O -0.363 6.363 8 N -0.357 5.357 9 C -0.030 4.030 10 C -0.159 4.159 11 C -0.155 4.155 12 C 0.013 3.987 13 H 0.049 0.951 14 C 0.013 3.987 15 N -0.322 5.322 16 C 0.062 3.938 17 C -0.273 4.273 18 H 0.079 0.921 19 C -0.258 4.258 20 N -0.608 5.608 21 Si 0.770 3.230 22 H -0.210 1.210 23 H -0.251 1.251 24 H -0.194 1.194 25 C -0.142 4.142 26 C -0.184 4.184 27 C -0.150 4.150 28 C -0.149 4.149 29 H 0.061 0.939 30 H 0.054 0.946 31 H 0.129 0.871 32 H 0.060 0.940 33 H 0.041 0.959 34 H 0.103 0.897 35 H 0.118 0.882 36 H 0.103 0.897 37 H 0.091 0.909 38 H 0.128 0.872 39 H 0.090 0.910 40 H 0.102 0.898 41 H 0.105 0.895 42 H 0.062 0.938 43 H 0.067 0.933 44 H 0.004 0.996 45 H 0.040 0.960 46 H 0.016 0.984 47 H 0.041 0.959 48 H 0.102 0.898 49 H 0.061 0.939 50 H 0.064 0.936 51 H 0.080 0.920 52 H 0.085 0.915 53 H 0.110 0.890 54 H 0.088 0.912 55 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 6.997 -19.596 3.286 21.066 hybrid contribution -0.899 1.499 -1.173 2.104 sum 6.098 -18.098 2.114 19.214 Atomic orbital electron populations 1.22906 0.79972 1.04013 1.00120 1.87763 1.21051 1.27940 1.95492 1.22464 0.95251 0.83939 0.99274 1.21535 0.91785 0.94466 1.04675 1.21205 0.97893 0.94488 0.93027 1.20172 0.83754 0.84066 0.83405 1.90927 1.30988 1.31436 1.82987 1.48295 1.43602 1.33136 1.10657 1.22651 0.92298 0.90957 0.97102 1.22724 1.03783 0.95824 0.93549 1.22592 0.99597 0.96466 0.96834 1.22218 0.98170 0.92658 0.85698 0.95114 1.21309 0.93209 0.92461 0.91677 1.43918 1.12681 1.71248 1.04395 1.20188 0.86969 0.92863 0.93804 1.18954 1.13866 1.08006 0.86501 0.92112 1.25367 1.01035 0.98853 1.00593 1.70237 1.30877 1.25750 1.33909 0.85897 0.78414 0.74705 0.83935 1.21018 1.25116 1.19437 1.22297 0.97857 0.98572 0.95473 1.22810 0.96612 0.98993 0.99995 1.22330 0.96809 0.98163 0.97675 1.22481 0.91413 1.02968 0.98050 0.93931 0.94581 0.87131 0.94017 0.95867 0.89653 0.88217 0.89695 0.90890 0.87222 0.90992 0.89751 0.89493 0.93801 0.93349 0.99565 0.96009 0.98440 0.95869 0.89816 0.93860 0.93635 0.92032 0.91546 0.89004 0.91249 0.87668 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.58 11.01 113.37 1.25 1.83 16 2 O -0.40 -11.19 10.70 -148.98 -1.59 -12.79 16 3 C 0.07 2.05 5.48 71.98 0.39 2.45 16 4 C -0.09 -2.21 4.13 30.59 0.13 -2.09 16 5 C -0.06 -1.91 0.37 -52.20 -0.02 -1.93 16 6 C 0.50 19.19 3.43 87.66 0.30 19.49 16 7 O -0.49 -24.70 9.88 -3.02 -0.03 -24.73 16 8 N -0.62 -20.05 2.88 -788.49 -2.27 -22.33 16 9 C 0.09 1.94 5.03 86.78 0.44 2.38 16 10 C -0.12 -2.01 7.07 31.91 0.23 -1.79 16 11 C -0.12 -2.50 6.48 31.78 0.21 -2.29 16 12 C 0.12 3.99 3.23 45.34 0.15 4.13 16 13 H 0.03 1.21 7.92 -2.39 -0.02 1.19 16 14 C 0.14 5.76 5.18 86.38 0.45 6.21 16 15 N -0.60 -31.53 1.76 -726.93 -1.28 -32.81 16 16 C 0.21 11.61 8.25 127.77 1.05 12.67 16 17 C -0.14 -7.98 5.71 84.04 0.48 -7.50 16 18 H 0.06 3.33 5.32 -2.91 -0.02 3.32 16 19 C -0.07 -4.10 5.33 84.86 0.45 -3.65 16 20 N -0.96 -62.08 10.12 21.65 0.22 -61.86 16 21 Si 0.94 49.50 25.50 68.60 1.75 51.25 16 22 H -0.28 -14.60 6.82 99.48 0.68 -13.92 16 23 H -0.32 -17.73 7.11 99.48 0.71 -17.03 16 24 H -0.27 -13.19 6.87 99.48 0.68 -12.50 16 25 C -0.10 -3.72 4.61 31.67 0.15 -3.57 16 26 C -0.15 -5.24 5.37 31.88 0.17 -5.07 16 27 C -0.11 -2.89 6.83 31.67 0.22 -2.67 16 28 C -0.11 -2.72 4.49 31.32 0.14 -2.58 16 29 H 0.04 0.93 8.14 -2.39 -0.02 0.91 16 30 H 0.04 0.83 8.14 -2.39 -0.02 0.81 16 31 H 0.11 1.82 8.14 -2.38 -0.02 1.80 16 32 H 0.04 1.36 6.85 -2.39 -0.02 1.35 16 33 H 0.02 0.84 7.48 -2.39 -0.02 0.82 16 34 H 0.09 1.93 5.94 -2.39 -0.01 1.92 16 35 H 0.10 2.10 8.14 -2.39 -0.02 2.08 16 36 H 0.08 1.54 5.27 -2.38 -0.01 1.53 16 37 H 0.07 1.42 6.64 -2.39 -0.02 1.40 16 38 H 0.11 1.17 8.14 -2.38 -0.02 1.15 16 39 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 40 H 0.08 1.66 7.86 -2.39 -0.02 1.64 16 41 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 42 H 0.04 1.71 8.13 -2.39 -0.02 1.69 16 43 H 0.05 1.96 7.97 -2.39 -0.02 1.95 16 44 H -0.01 -0.84 7.53 -2.39 -0.02 -0.86 16 45 H 0.02 1.36 6.58 -2.39 -0.02 1.34 16 46 H 0.00 -0.14 7.82 -2.38 -0.02 -0.16 16 47 H 0.23 15.01 8.31 -92.71 -0.77 14.23 16 48 H 0.08 2.52 7.56 -2.39 -0.02 2.50 16 49 H 0.04 1.99 6.75 -2.39 -0.02 1.97 16 50 H 0.05 1.99 2.59 -2.39 -0.01 1.99 16 51 H 0.06 2.09 8.14 -2.38 -0.02 2.07 16 52 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 53 H 0.09 1.83 8.14 -2.39 -0.02 1.81 16 54 H 0.07 1.83 5.05 -2.38 -0.01 1.82 16 55 H 0.10 1.76 7.67 -2.39 -0.02 1.74 16 Total: -1.00 -78.02 384.30 3.78 -74.23 By element: Atomic # 1 Polarization: 12.20 SS G_CDS: 0.81 Total: 13.01 kcal Atomic # 6 Polarization: 9.84 SS G_CDS: 6.17 Total: 16.02 kcal Atomic # 7 Polarization: -113.66 SS G_CDS: -3.33 Total: -116.99 kcal Atomic # 8 Polarization: -35.90 SS G_CDS: -1.62 Total: -37.52 kcal Atomic # 14 Polarization: 49.50 SS G_CDS: 1.75 Total: 51.25 kcal Total: -78.02 3.78 -74.23 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570549471.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.291 kcal (2) G-P(sol) polarization free energy of solvation -78.015 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.781 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.234 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.943 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds