Wall clock time and date at job start Tue Mar 31 2020 22:20:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42897 * 113.99619 * 2 1 4 4 C 1.53001 * 109.46998 * 180.02562 * 3 2 1 5 5 C 1.53001 * 109.47115 * 185.12535 * 4 3 2 6 6 C 1.50704 * 110.43585 * 306.05851 * 5 4 3 7 7 O 1.21282 * 120.00034 * 110.33201 * 6 5 4 8 8 N 1.34774 * 119.99947 * 290.34241 * 6 5 4 9 9 C 1.47429 * 125.64915 * 5.18331 * 8 6 5 10 10 C 1.54909 * 104.83028 * 155.83719 * 9 8 6 11 11 C 1.55163 * 101.58349 * 37.01138 * 10 9 8 12 12 C 1.47025 * 125.64817 * 185.14668 * 8 6 5 13 13 H 1.08998 * 109.87938 * 300.65999 * 12 8 6 14 14 C 1.52997 * 109.88078 * 61.67435 * 12 8 6 15 15 N 1.46505 * 109.47033 * 299.16233 * 14 12 8 16 16 C 1.46499 * 119.99394 * 100.21027 * 15 14 12 17 17 C 1.36927 * 120.00102 * 280.20330 * 15 14 12 18 18 H 1.08004 * 120.00283 * 17.74824 * 17 15 14 19 19 C 1.38822 * 120.00098 * 197.74515 * 17 15 14 20 20 N 1.31622 * 119.99692 * 12.87398 * 19 17 15 21 21 Si 1.86792 * 120.00072 * 192.87189 * 19 17 15 22 22 H 1.48508 * 109.47144 * 90.00081 * 21 19 17 23 23 H 1.48500 * 109.47054 * 209.99936 * 21 19 17 24 24 H 1.48495 * 109.47425 * 330.00136 * 21 19 17 25 25 C 1.54890 * 110.48855 * 68.60172 * 5 4 3 26 26 C 1.55241 * 102.58476 * 156.67542 * 25 5 4 27 27 C 1.54267 * 104.23413 * 322.08502 * 26 25 5 28 28 C 1.53872 * 106.59803 * 23.61370 * 27 26 25 29 29 H 1.09001 * 109.47213 * 59.99589 * 1 2 3 30 30 H 1.08997 * 109.46859 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.47068 * 299.99565 * 1 2 3 32 32 H 1.09009 * 109.47267 * 60.00468 * 3 2 1 33 33 H 1.09000 * 109.47953 * 300.00300 * 3 2 1 34 34 H 1.08993 * 109.47296 * 65.12295 * 4 3 2 35 35 H 1.08998 * 109.46948 * 305.12075 * 4 3 2 36 36 H 1.08997 * 110.36331 * 274.67483 * 9 8 6 37 37 H 1.09002 * 110.36594 * 36.88955 * 9 8 6 38 38 H 1.09006 * 111.00415 * 155.08353 * 10 9 8 39 39 H 1.08999 * 111.00848 * 278.89570 * 10 9 8 40 40 H 1.08995 * 110.71864 * 206.12913 * 11 10 9 41 41 H 1.09004 * 110.72066 * 82.85721 * 11 10 9 42 42 H 1.08994 * 109.47575 * 59.16876 * 14 12 8 43 43 H 1.09004 * 109.47020 * 179.16715 * 14 12 8 44 44 H 1.08997 * 109.47571 * 93.18872 * 16 15 14 45 45 H 1.09005 * 109.46675 * 213.19075 * 16 15 14 46 46 H 1.09003 * 109.47247 * 333.18141 * 16 15 14 47 47 H 0.96997 * 119.99906 * 180.02562 * 20 19 17 48 48 H 1.08994 * 110.75333 * 275.06406 * 25 5 4 49 49 H 1.08996 * 110.75788 * 38.44258 * 25 5 4 50 50 H 1.09003 * 110.46549 * 203.39129 * 26 25 5 51 51 H 1.09006 * 110.47027 * 80.77439 * 26 25 5 52 52 H 1.08998 * 110.02793 * 264.32338 * 27 26 25 53 53 H 1.09002 * 110.03229 * 142.89846 * 27 26 25 54 54 H 1.09002 * 110.02877 * 240.71873 * 28 27 26 55 55 H 1.08996 * 110.03587 * 119.28884 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 6 4.1573 2.5767 0.1282 6 6 3.6192 3.4943 -0.9394 7 8 2.8783 4.4060 -0.6384 8 7 3.9613 3.3015 -2.2287 9 6 4.7606 2.1761 -2.7465 10 6 4.3582 2.0570 -4.2377 11 6 4.1829 3.5472 -4.6331 12 6 3.5985 4.1783 -3.3517 13 1 2.5138 4.2484 -3.4318 14 6 4.1955 5.5707 -3.1386 15 7 3.6594 6.1481 -1.9035 16 6 4.4571 6.1193 -0.6750 17 6 2.4128 6.7147 -1.8973 18 1 1.7151 6.4935 -2.6915 19 6 2.0458 7.5734 -0.8702 20 7 2.9592 8.0436 -0.0474 21 14 0.2556 8.0617 -0.6558 22 1 -0.4168 7.0937 0.2477 23 1 0.1808 9.4228 -0.0668 24 1 -0.4207 8.0566 -1.9779 25 6 3.8850 3.1640 1.5354 26 6 5.0294 4.2004 1.6966 27 6 6.2497 3.5235 1.0389 28 6 5.6951 2.4912 0.0416 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8901 32 1 1.6886 1.8464 0.8901 33 1 1.6886 1.8465 -0.8899 34 1 3.8631 0.7253 -0.9331 35 1 3.8513 0.5665 0.8397 36 1 5.8249 2.3940 -2.6571 37 1 4.5155 1.2588 -2.2113 38 1 5.1517 1.5890 -4.8204 39 1 3.4215 1.5104 -4.3472 40 1 3.4851 3.6460 -5.4645 41 1 5.1449 3.9964 -4.8800 42 1 5.2801 5.4935 -3.0627 43 1 3.9350 6.2107 -3.9817 44 1 5.0239 7.0462 -0.5880 45 1 3.7957 6.0157 0.1852 46 1 5.1450 5.2744 -0.7082 47 1 2.7027 8.6433 0.6705 48 1 2.9110 3.6520 1.5683 49 1 3.9558 2.3884 2.2980 50 1 5.2229 4.3935 2.7518 51 1 4.7811 5.1263 1.1776 52 1 6.8530 3.0240 1.7968 53 1 6.8499 4.2658 0.5128 54 1 6.0294 1.4905 0.3157 55 1 6.0263 2.7324 -0.9684 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001570549472.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:20:39 Heat of formation + Delta-G solvation = -43.148174 kcal Electronic energy + Delta-G solvation = -34322.294974 eV Core-core repulsion = 30360.606243 eV Total energy + Delta-G solvation = -3961.688731 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.88814 -39.36324 -38.61211 -37.51860 -36.88515 -33.80746 -33.13740 -32.21761 -30.65287 -29.53895 -28.84945 -27.79624 -26.78451 -26.58363 -24.63829 -23.67180 -23.17158 -22.06445 -21.19805 -21.00987 -19.31696 -18.47629 -17.66057 -17.34680 -17.28435 -16.89962 -16.83461 -16.53796 -15.89337 -15.78779 -15.49425 -15.37068 -15.00400 -14.70853 -14.64287 -14.22817 -14.10397 -13.71171 -13.56175 -13.35965 -13.18291 -12.99638 -12.92842 -12.68430 -12.63505 -12.50304 -12.36175 -12.23517 -12.15390 -12.11983 -11.98154 -11.89072 -11.81674 -11.77983 -11.65104 -11.51027 -11.43255 -11.28882 -11.01224 -10.70388 -10.41764 -10.03145 -9.22122 -8.43416 -7.65717 -5.01749 1.36963 1.41890 1.46722 2.16563 2.36822 2.57720 2.68926 3.47050 3.52099 3.62571 3.72420 3.78991 3.88982 4.00737 4.03800 4.14120 4.19594 4.28867 4.37731 4.40064 4.43193 4.47140 4.49210 4.52117 4.59569 4.61332 4.65905 4.73807 4.75319 4.78332 4.86097 4.91548 4.93157 5.02038 5.03166 5.03914 5.07668 5.12563 5.17757 5.20377 5.22161 5.27433 5.37343 5.43758 5.48584 5.59171 5.63291 5.67039 5.83577 6.03912 6.08781 6.49234 7.03993 7.33786 7.84182 8.09538 8.49692 9.38793 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.009036 B = 0.005658 C = 0.005291 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3097.870642 B = 4947.874315 C = 5290.697936 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.401 6.401 3 C 0.067 3.933 4 C -0.093 4.093 5 C -0.070 4.070 6 C 0.511 3.489 7 O -0.508 6.508 8 N -0.617 5.617 9 C 0.087 3.913 10 C -0.120 4.120 11 C -0.117 4.117 12 C 0.120 3.880 13 H 0.028 0.972 14 C 0.140 3.860 15 N -0.594 5.594 16 C 0.213 3.787 17 C -0.194 4.194 18 H 0.049 0.951 19 C -0.058 4.058 20 N -0.946 5.946 21 Si 0.948 3.052 22 H -0.303 1.303 23 H -0.297 1.297 24 H -0.273 1.273 25 C -0.098 4.098 26 C -0.151 4.151 27 C -0.115 4.115 28 C -0.110 4.110 29 H 0.035 0.965 30 H 0.111 0.889 31 H 0.040 0.960 32 H 0.038 0.962 33 H 0.023 0.977 34 H 0.093 0.907 35 H 0.101 0.899 36 H 0.078 0.922 37 H 0.089 0.911 38 H 0.112 0.888 39 H 0.070 0.930 40 H 0.084 0.916 41 H 0.086 0.914 42 H 0.049 0.951 43 H 0.039 0.961 44 H -0.043 1.043 45 H 0.052 0.948 46 H 0.011 0.989 47 H 0.237 0.763 48 H 0.039 0.961 49 H 0.093 0.907 50 H 0.065 0.935 51 H 0.056 0.944 52 H 0.087 0.913 53 H 0.049 0.951 54 H 0.105 0.895 55 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.982 -21.104 -3.945 22.577 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.320 6.320 3 C -0.009 4.009 4 C -0.130 4.130 5 C -0.073 4.073 6 C 0.298 3.702 7 O -0.380 6.380 8 N -0.354 5.354 9 C -0.035 4.035 10 C -0.158 4.158 11 C -0.155 4.155 12 C 0.014 3.986 13 H 0.046 0.954 14 C 0.012 3.988 15 N -0.316 5.316 16 C 0.069 3.931 17 C -0.325 4.325 18 H 0.067 0.933 19 C -0.250 4.250 20 N -0.597 5.597 21 Si 0.780 3.220 22 H -0.232 1.232 23 H -0.224 1.224 24 H -0.198 1.198 25 C -0.136 4.136 26 C -0.188 4.188 27 C -0.152 4.152 28 C -0.147 4.147 29 H 0.054 0.946 30 H 0.130 0.870 31 H 0.059 0.941 32 H 0.056 0.944 33 H 0.041 0.959 34 H 0.111 0.889 35 H 0.119 0.881 36 H 0.096 0.904 37 H 0.107 0.893 38 H 0.130 0.870 39 H 0.089 0.911 40 H 0.102 0.898 41 H 0.105 0.895 42 H 0.068 0.932 43 H 0.057 0.943 44 H -0.025 1.025 45 H 0.071 0.929 46 H 0.029 0.971 47 H 0.046 0.954 48 H 0.058 0.942 49 H 0.111 0.889 50 H 0.084 0.916 51 H 0.074 0.926 52 H 0.106 0.894 53 H 0.068 0.932 54 H 0.123 0.877 55 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 6.636 -20.626 -3.572 21.959 hybrid contribution -1.772 1.557 0.482 2.407 sum 4.864 -19.069 -3.090 19.921 Atomic orbital electron populations 1.22906 0.80009 1.04048 1.00055 1.87768 1.20972 1.27775 1.95469 1.22456 0.95387 0.84054 0.99045 1.21612 0.91571 0.94598 1.05198 1.21528 0.97747 0.94087 0.93943 1.20370 0.82209 0.85096 0.82477 1.91055 1.35399 1.30790 1.80805 1.48410 1.54839 1.26353 1.05806 1.22808 0.95706 0.89561 0.95384 1.22759 1.03021 0.95518 0.94510 1.22607 1.02045 0.96098 0.94789 1.22184 0.97669 0.91765 0.86995 0.95355 1.21290 0.95923 0.92841 0.88706 1.43849 1.15779 1.66700 1.05255 1.20663 0.91453 0.91513 0.89461 1.19028 0.90406 1.16424 1.06625 0.93303 1.25259 0.99691 0.99845 1.00228 1.70246 1.31578 1.36967 1.20908 0.85508 0.82828 0.76170 0.77469 1.23189 1.22363 1.19850 1.22431 0.98167 0.98123 0.94865 1.22799 0.95718 0.99468 1.00820 1.22063 0.96887 0.97697 0.98560 1.22391 0.90546 1.01172 1.00572 0.94580 0.87047 0.94102 0.94417 0.95881 0.88851 0.88101 0.90407 0.89267 0.86993 0.91144 0.89785 0.89494 0.93236 0.94273 1.02473 0.92930 0.97089 0.95400 0.94240 0.88878 0.91602 0.92562 0.89405 0.93244 0.87681 0.90712 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.57 11.01 113.37 1.25 1.82 16 2 O -0.40 -10.66 10.70 -148.98 -1.59 -12.26 16 3 C 0.07 1.96 5.43 71.98 0.39 2.35 16 4 C -0.09 -2.17 4.38 30.59 0.13 -2.03 16 5 C -0.07 -1.96 0.27 -51.85 -0.01 -1.98 16 6 C 0.51 18.97 2.59 87.66 0.23 19.20 16 7 O -0.51 -25.30 9.44 -3.04 -0.03 -25.33 16 8 N -0.62 -19.66 2.94 -788.05 -2.32 -21.98 16 9 C 0.09 1.78 5.21 86.85 0.45 2.23 16 10 C -0.12 -2.01 7.08 31.99 0.23 -1.79 16 11 C -0.12 -2.60 6.48 31.78 0.21 -2.39 16 12 C 0.12 4.16 3.19 45.34 0.14 4.31 16 13 H 0.03 1.19 8.14 -2.39 -0.02 1.17 16 14 C 0.14 5.87 5.20 86.38 0.45 6.32 16 15 N -0.59 -31.74 1.69 -726.92 -1.23 -32.97 16 16 C 0.21 11.49 4.92 127.77 0.63 12.11 16 17 C -0.19 -11.58 8.27 84.04 0.70 -10.89 16 18 H 0.05 2.93 7.86 -2.91 -0.02 2.91 16 19 C -0.06 -3.59 5.11 84.86 0.43 -3.16 16 20 N -0.95 -61.29 10.41 21.66 0.23 -61.07 16 21 Si 0.95 50.88 29.57 68.60 2.03 52.91 16 22 H -0.30 -16.60 7.11 99.48 0.71 -15.89 16 23 H -0.30 -15.77 7.11 99.48 0.71 -15.07 16 24 H -0.27 -13.91 7.11 99.48 0.71 -13.20 16 25 C -0.10 -3.12 4.84 32.01 0.15 -2.96 16 26 C -0.15 -5.02 6.30 31.79 0.20 -4.82 16 27 C -0.11 -2.92 6.20 31.32 0.19 -2.73 16 28 C -0.11 -2.44 5.36 31.32 0.17 -2.27 16 29 H 0.04 0.81 8.14 -2.39 -0.02 0.79 16 30 H 0.11 1.77 8.14 -2.39 -0.02 1.75 16 31 H 0.04 0.88 8.14 -2.38 -0.02 0.86 16 32 H 0.04 1.21 7.26 -2.38 -0.02 1.19 16 33 H 0.02 0.79 7.32 -2.39 -0.02 0.78 16 34 H 0.09 1.87 5.13 -2.39 -0.01 1.86 16 35 H 0.10 1.95 8.05 -2.39 -0.02 1.93 16 36 H 0.08 1.39 6.64 -2.39 -0.02 1.37 16 37 H 0.09 1.57 4.82 -2.39 -0.01 1.56 16 38 H 0.11 1.17 8.14 -2.38 -0.02 1.15 16 39 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 40 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 41 H 0.09 1.73 7.85 -2.38 -0.02 1.71 16 42 H 0.05 1.94 7.99 -2.39 -0.02 1.92 16 43 H 0.04 1.65 8.12 -2.38 -0.02 1.64 16 44 H -0.04 -2.62 7.59 -2.39 -0.02 -2.64 16 45 H 0.05 3.16 3.99 -2.38 -0.01 3.15 16 46 H 0.01 0.52 5.09 -2.39 -0.01 0.51 16 47 H 0.24 15.09 8.31 -92.71 -0.77 14.32 16 48 H 0.04 1.58 7.04 -2.39 -0.02 1.56 16 49 H 0.09 2.35 7.99 -2.39 -0.02 2.33 16 50 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 51 H 0.06 2.45 3.67 -2.38 -0.01 2.44 16 52 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 53 H 0.05 1.38 7.97 -2.39 -0.02 1.36 16 54 H 0.10 1.61 7.84 -2.39 -0.02 1.59 16 55 H 0.07 1.68 4.81 -2.39 -0.01 1.67 16 Total: -1.00 -79.93 386.54 3.89 -76.05 By element: Atomic # 1 Polarization: 10.47 SS G_CDS: 0.87 Total: 11.34 kcal Atomic # 6 Polarization: 7.38 SS G_CDS: 5.94 Total: 13.32 kcal Atomic # 7 Polarization: -112.70 SS G_CDS: -3.33 Total: -116.02 kcal Atomic # 8 Polarization: -35.96 SS G_CDS: -1.62 Total: -37.58 kcal Atomic # 14 Polarization: 50.88 SS G_CDS: 2.03 Total: 52.91 kcal Total: -79.93 3.89 -76.05 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570549472.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.897 kcal (2) G-P(sol) polarization free energy of solvation -79.932 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.034 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.886 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.046 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.148 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds