Wall clock time and date at job start Tue Mar 31 2020 22:30:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42899 * 113.99790 * 2 1 4 4 H 1.08997 * 109.47325 * 30.00065 * 3 2 1 5 5 C 1.50697 * 109.47425 * 269.99708 * 3 2 1 6 6 O 1.21288 * 119.99996 * 350.91007 * 5 3 2 7 7 N 1.34770 * 120.00644 * 170.90723 * 5 3 2 8 8 C 1.46497 * 120.00629 * 184.95450 * 7 5 3 9 9 C 1.46507 * 119.99495 * 4.95454 * 7 5 3 10 10 H 1.08999 * 109.47172 * 354.30716 * 9 7 5 11 11 C 1.52997 * 109.46957 * 234.30395 * 9 7 5 12 12 N 1.46500 * 109.47326 * 56.33681 * 11 9 7 13 13 C 1.36927 * 120.00124 * 184.94167 * 12 11 9 14 14 H 1.07998 * 120.00495 * 4.84008 * 13 12 11 15 15 C 1.38818 * 120.00348 * 184.83570 * 13 12 11 16 16 N 1.31615 * 120.00620 * 181.50570 * 15 13 12 17 17 Si 1.86808 * 119.99583 * 1.50953 * 15 13 12 18 18 H 1.48503 * 109.47041 * 87.64255 * 17 15 13 19 19 H 1.48494 * 109.46801 * 207.64630 * 17 15 13 20 20 H 1.48499 * 109.46802 * 327.64191 * 17 15 13 21 21 C 1.53004 * 109.46831 * 114.30393 * 9 7 5 22 22 C 1.53004 * 117.49686 * 116.25280 * 21 9 7 23 23 C 1.53005 * 117.49506 * 184.91049 * 21 9 7 24 24 C 1.53000 * 109.46970 * 149.99843 * 3 2 1 25 25 C 1.53005 * 109.46942 * 54.51276 * 24 3 2 26 26 C 1.53000 * 109.46942 * 180.02562 * 25 24 3 27 27 C 1.53002 * 109.47063 * 60.00053 * 26 25 24 28 28 C 1.52995 * 109.47196 * 299.99866 * 27 26 25 29 29 C 1.53002 * 109.47373 * 60.00063 * 28 27 26 30 30 H 1.09000 * 109.47807 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47524 * 300.00500 * 1 2 3 32 32 H 1.09010 * 109.47495 * 59.99892 * 1 2 3 33 33 H 1.08996 * 109.47383 * 266.18874 * 8 7 5 34 34 H 1.09000 * 109.46906 * 26.18623 * 8 7 5 35 35 H 1.08998 * 109.47282 * 146.18320 * 8 7 5 36 36 H 1.09008 * 109.47059 * 176.33455 * 11 9 7 37 37 H 1.09003 * 109.47489 * 296.33043 * 11 9 7 38 38 H 0.97003 * 119.99595 * 4.94318 * 12 11 9 39 39 H 0.96996 * 120.00135 * 180.02562 * 16 15 13 40 40 H 1.08997 * 115.55362 * 330.58811 * 21 9 7 41 41 H 1.08996 * 117.50091 * 215.00073 * 22 21 9 42 42 H 1.09001 * 117.49833 * 0.02635 * 22 21 9 43 43 H 1.08997 * 117.49958 * 359.97438 * 23 21 9 44 44 H 1.09002 * 117.49264 * 145.00478 * 23 21 9 45 45 H 1.08996 * 109.47603 * 174.51063 * 24 3 2 46 46 H 1.09004 * 109.47223 * 299.99807 * 25 24 3 47 47 H 1.08998 * 109.46960 * 60.00082 * 25 24 3 48 48 H 1.08996 * 109.47603 * 299.99786 * 26 25 24 49 49 H 1.09005 * 109.46863 * 179.97438 * 26 25 24 50 50 H 1.08997 * 109.46952 * 179.97438 * 27 26 25 51 51 H 1.09004 * 109.47303 * 60.00070 * 27 26 25 52 52 H 1.09000 * 109.47195 * 299.99762 * 28 27 26 53 53 H 1.09002 * 109.47443 * 180.02562 * 28 27 26 54 54 H 1.08995 * 109.47319 * 180.02562 * 29 28 27 55 55 H 1.09004 * 109.46791 * 60.00001 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3449 1.9994 0.5138 5 6 2.2146 1.7644 -1.4208 6 8 2.0507 0.9883 -2.3383 7 7 2.5793 3.0372 -1.6720 8 6 2.6725 3.5134 -3.0543 9 6 2.8827 3.9448 -0.5626 10 1 2.6628 3.4491 0.3829 11 6 2.0271 5.2070 -0.6878 12 7 0.6110 4.8346 -0.7342 13 6 -0.3426 5.7938 -0.9470 14 1 -0.0477 6.8110 -1.1583 15 6 -1.6886 5.4589 -0.8912 16 7 -2.6049 6.3744 -1.1250 17 14 -2.1995 3.7088 -0.4842 18 1 -2.3036 3.5534 0.9890 19 1 -3.5164 3.4201 -1.1068 20 1 -1.1845 2.7616 -1.0115 21 6 4.3638 4.3261 -0.6061 22 6 4.7077 5.7977 -0.8455 23 6 4.9072 5.1805 0.5410 24 6 3.3588 1.2633 0.7213 25 6 4.2446 0.1907 0.0841 26 6 5.5930 0.1481 0.8058 27 6 5.3708 -0.1851 2.2824 28 6 4.4851 0.8873 2.9196 29 6 3.1366 0.9300 2.1979 30 1 -0.3635 -1.0276 -0.0005 31 1 -0.3634 0.5139 0.8899 32 1 -0.3634 0.5139 -0.8900 33 1 3.6979 3.4048 -3.4076 34 1 2.0064 2.9263 -3.6865 35 1 2.3826 4.5632 -3.0973 36 1 2.2049 5.8532 0.1719 37 1 2.2935 5.7374 -1.6021 38 1 0.3490 3.9083 -0.6141 39 1 -3.5454 6.1404 -1.0856 40 1 5.0296 3.5775 -1.0353 41 1 5.5997 6.0171 -1.4322 42 1 3.8787 6.4942 -0.9716 43 1 4.2095 5.4712 1.3263 44 1 5.9307 4.9938 0.8664 45 1 3.8465 2.2344 0.6370 46 1 3.7570 -0.7805 0.1684 47 1 4.4025 0.4279 -0.9680 48 1 6.0810 1.1191 0.7219 49 1 6.2239 -0.6163 0.3521 50 1 6.3315 -0.2160 2.7964 51 1 4.8830 -1.1563 2.3663 52 1 4.9730 1.8584 2.8358 53 1 4.3271 0.6502 3.9717 54 1 2.5058 1.6944 2.6516 55 1 2.6487 -0.0411 2.2819 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001571374049.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:30:26 Heat of formation + Delta-G solvation = -65.818879 kcal Electronic energy + Delta-G solvation = -33391.732011 eV Core-core repulsion = 29429.060204 eV Total energy + Delta-G solvation = -3962.671806 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.99297 -39.73876 -39.09801 -38.00548 -36.57831 -35.70000 -33.40898 -33.16303 -31.62385 -30.00245 -29.17646 -27.97870 -26.48333 -25.75189 -23.98810 -23.53256 -22.97623 -22.66142 -21.54077 -20.67943 -20.29743 -19.41779 -18.52553 -17.94110 -17.28201 -17.01774 -16.58781 -16.29992 -16.10578 -15.95530 -15.52117 -15.37634 -15.18079 -14.96158 -14.88117 -14.78397 -14.64224 -14.24582 -14.04944 -13.69476 -13.48505 -13.26977 -13.15933 -13.03788 -12.99866 -12.89237 -12.80169 -12.41589 -12.32661 -12.25582 -12.06743 -11.95046 -11.93323 -11.87325 -11.66560 -11.28592 -11.25421 -11.14783 -11.04612 -10.91992 -10.86877 -10.31724 -9.72729 -9.35034 -8.08480 -5.40773 1.24093 1.28242 1.34179 1.43036 1.80697 2.38808 2.61761 2.89516 3.21127 3.25146 3.44622 3.55341 3.67899 3.82426 3.88991 3.94628 4.04429 4.05312 4.14382 4.25321 4.27465 4.28933 4.34491 4.39768 4.41931 4.46832 4.50269 4.58772 4.63784 4.65991 4.68974 4.69914 4.75786 4.79424 4.88216 4.95375 5.02355 5.04436 5.11247 5.18272 5.26219 5.27591 5.32436 5.33823 5.38711 5.39859 5.44123 5.45899 5.63915 5.72052 5.84332 6.15026 6.28683 7.00731 7.03573 7.76965 7.93395 9.12819 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.010549 B = 0.005194 C = 0.004292 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2653.554560 B = 5390.044048 C = 6522.578925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.360 6.360 3 C 0.073 3.927 4 H 0.079 0.921 5 C 0.489 3.511 6 O -0.571 6.571 7 N -0.593 5.593 8 C 0.091 3.909 9 C 0.154 3.846 10 H 0.104 0.896 11 C 0.141 3.859 12 N -0.754 5.754 13 C -0.224 4.224 14 H 0.066 0.934 15 C -0.054 4.054 16 N -0.978 5.978 17 Si 0.934 3.066 18 H -0.266 1.266 19 H -0.298 1.298 20 H -0.271 1.271 21 C -0.169 4.169 22 C -0.182 4.182 23 C -0.154 4.154 24 C -0.079 4.079 25 C -0.102 4.102 26 C -0.113 4.113 27 C -0.117 4.117 28 C -0.113 4.113 29 C -0.113 4.113 30 H 0.115 0.885 31 H 0.055 0.945 32 H 0.016 0.984 33 H 0.073 0.927 34 H 0.049 0.951 35 H 0.074 0.926 36 H 0.050 0.950 37 H 0.042 0.958 38 H 0.357 0.643 39 H 0.257 0.743 40 H 0.116 0.884 41 H 0.108 0.892 42 H 0.091 0.909 43 H 0.098 0.902 44 H 0.118 0.882 45 H 0.107 0.893 46 H 0.056 0.944 47 H 0.037 0.963 48 H 0.071 0.929 49 H 0.064 0.936 50 H 0.076 0.924 51 H 0.055 0.945 52 H 0.073 0.927 53 H 0.073 0.927 54 H 0.066 0.934 55 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.730 -10.478 8.825 24.847 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.277 6.277 3 C 0.011 3.989 4 H 0.097 0.903 5 C 0.277 3.723 6 O -0.450 6.450 7 N -0.325 5.325 8 C -0.052 4.052 9 C 0.050 3.950 10 H 0.121 0.879 11 C 0.015 3.985 12 N -0.399 5.399 13 C -0.355 4.355 14 H 0.084 0.916 15 C -0.246 4.246 16 N -0.629 5.629 17 Si 0.763 3.237 18 H -0.192 1.192 19 H -0.225 1.225 20 H -0.197 1.197 21 C -0.189 4.189 22 C -0.219 4.219 23 C -0.191 4.191 24 C -0.097 4.097 25 C -0.140 4.140 26 C -0.150 4.150 27 C -0.155 4.155 28 C -0.150 4.150 29 C -0.150 4.150 30 H 0.133 0.867 31 H 0.074 0.926 32 H 0.035 0.965 33 H 0.092 0.908 34 H 0.068 0.932 35 H 0.093 0.907 36 H 0.068 0.932 37 H 0.060 0.940 38 H 0.189 0.811 39 H 0.066 0.934 40 H 0.134 0.866 41 H 0.126 0.874 42 H 0.109 0.891 43 H 0.116 0.884 44 H 0.137 0.863 45 H 0.125 0.875 46 H 0.074 0.926 47 H 0.055 0.945 48 H 0.090 0.910 49 H 0.082 0.918 50 H 0.094 0.906 51 H 0.074 0.926 52 H 0.092 0.908 53 H 0.092 0.908 54 H 0.085 0.915 55 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 20.673 -10.842 8.308 24.778 hybrid contribution -1.697 -0.499 -0.630 1.877 sum 18.976 -11.341 7.678 23.402 Atomic orbital electron populations 1.23060 0.80498 1.04469 0.99627 1.87919 1.20191 1.25273 1.94308 1.22336 0.98723 0.86412 0.91418 0.90316 1.21734 0.76022 0.81814 0.92705 1.90638 1.52549 1.54149 1.47679 1.47860 1.66558 1.10140 1.07989 1.21552 1.01824 1.00187 0.81605 1.21233 0.94053 0.90198 0.89469 0.87882 1.21367 0.82053 0.95122 0.99950 1.42644 1.02697 1.05858 1.88685 1.18999 0.86671 0.91502 1.38297 0.91627 1.25316 0.95922 1.00416 1.02943 1.69835 1.00296 1.34459 1.58269 0.85746 0.77212 0.81900 0.78832 1.19180 1.22470 1.19678 1.22445 0.93725 0.95733 1.06948 1.23204 1.03753 0.94470 1.00445 1.23105 1.03131 1.01466 0.91385 1.21539 0.90578 1.01741 0.95858 1.21372 0.96242 0.98539 0.97854 1.21509 0.95419 1.02267 0.95807 1.21532 1.00194 0.98735 0.94991 1.21503 0.94330 0.99916 0.99284 1.21572 0.98844 1.02177 0.92439 0.86709 0.92626 0.96471 0.90834 0.93228 0.90718 0.93226 0.94021 0.81061 0.93376 0.86632 0.87406 0.89053 0.88397 0.86340 0.87494 0.92561 0.94465 0.91038 0.91752 0.90563 0.92620 0.90787 0.90808 0.91521 0.91907 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.58 10.81 113.37 1.23 1.81 16 2 O -0.36 -11.38 8.55 -130.10 -1.11 -12.50 16 3 C 0.07 2.17 1.35 29.85 0.04 2.21 16 4 H 0.08 2.40 7.07 -2.39 -0.02 2.38 16 5 C 0.49 17.21 6.02 87.66 0.53 17.74 16 6 O -0.57 -24.36 16.09 15.82 0.25 -24.10 16 7 N -0.59 -18.56 2.34 -822.60 -1.92 -20.48 16 8 C 0.09 2.81 9.97 127.77 1.27 4.09 16 9 C 0.15 4.07 1.66 44.99 0.07 4.14 16 10 H 0.10 2.60 4.45 -2.39 -0.01 2.59 16 11 C 0.14 4.74 3.94 86.38 0.34 5.08 16 12 N -0.75 -33.52 5.20 -343.45 -1.79 -35.31 16 13 C -0.22 -12.31 10.47 84.04 0.88 -11.43 16 14 H 0.07 3.90 8.06 -2.91 -0.02 3.88 16 15 C -0.05 -3.14 5.50 84.86 0.47 -2.68 16 16 N -0.98 -61.96 13.97 21.65 0.30 -61.66 16 17 Si 0.93 45.84 27.75 68.60 1.90 47.74 16 18 H -0.27 -12.30 7.11 99.48 0.71 -11.60 16 19 H -0.30 -15.01 7.11 99.48 0.71 -14.30 16 20 H -0.27 -12.72 6.49 99.48 0.65 -12.08 16 21 C -0.17 -3.25 4.65 -10.79 -0.05 -3.30 16 22 C -0.18 -3.26 9.50 30.62 0.29 -2.97 16 23 C -0.15 -2.31 9.99 30.62 0.31 -2.00 16 24 C -0.08 -1.75 1.54 -10.79 -0.02 -1.77 16 25 C -0.10 -2.34 4.82 30.60 0.15 -2.19 16 26 C -0.11 -1.83 5.92 30.59 0.18 -1.65 16 27 C -0.12 -1.62 5.92 30.59 0.18 -1.44 16 28 C -0.11 -1.56 5.92 30.59 0.18 -1.38 16 29 C -0.11 -2.10 5.10 30.60 0.16 -1.94 16 30 H 0.11 2.73 8.14 -2.39 -0.02 2.71 16 31 H 0.06 1.47 8.09 -2.39 -0.02 1.45 16 32 H 0.02 0.59 8.13 -2.38 -0.02 0.57 16 33 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 34 H 0.05 1.76 7.38 -2.39 -0.02 1.74 16 35 H 0.07 2.35 6.26 -2.39 -0.01 2.34 16 36 H 0.05 1.60 7.48 -2.38 -0.02 1.59 16 37 H 0.04 1.44 5.56 -2.39 -0.01 1.43 16 38 H 0.36 15.97 5.35 -92.71 -0.50 15.47 16 39 H 0.26 15.65 8.31 -92.71 -0.77 14.88 16 40 H 0.12 2.13 8.14 -2.39 -0.02 2.11 16 41 H 0.11 1.61 8.14 -2.39 -0.02 1.59 16 42 H 0.09 1.98 5.81 -2.39 -0.01 1.96 16 43 H 0.10 1.54 7.96 -2.39 -0.02 1.52 16 44 H 0.12 1.27 8.14 -2.39 -0.02 1.25 16 45 H 0.11 2.13 4.72 -2.39 -0.01 2.12 16 46 H 0.06 1.47 7.55 -2.39 -0.02 1.45 16 47 H 0.04 1.01 7.40 -2.39 -0.02 0.99 16 48 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 49 H 0.06 1.00 8.14 -2.38 -0.02 0.98 16 50 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 51 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 52 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 53 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 54 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 55 H 0.06 1.29 7.84 -2.39 -0.02 1.27 16 Total: -1.00 -72.41 412.81 4.15 -68.26 By element: Atomic # 1 Polarization: 35.41 SS G_CDS: 0.31 Total: 35.71 kcal Atomic # 6 Polarization: -3.87 SS G_CDS: 6.21 Total: 2.34 kcal Atomic # 7 Polarization: -114.04 SS G_CDS: -3.41 Total: -117.45 kcal Atomic # 8 Polarization: -35.74 SS G_CDS: -0.86 Total: -36.60 kcal Atomic # 14 Polarization: 45.84 SS G_CDS: 1.90 Total: 47.74 kcal Total: -72.41 4.15 -68.26 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001571374049.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.440 kcal (2) G-P(sol) polarization free energy of solvation -72.411 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.971 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.152 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.259 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.819 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds