Wall clock time and date at job start Tue Mar 31 2020 22:30:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42903 * 113.99591 * 2 1 4 4 H 1.09003 * 109.47460 * 30.00037 * 3 2 1 5 5 C 1.50702 * 109.46978 * 269.99796 * 3 2 1 6 6 O 1.21283 * 120.00262 * 355.00493 * 5 3 2 7 7 N 1.34777 * 119.99928 * 174.72398 * 5 3 2 8 8 C 1.46506 * 120.00264 * 0.28128 * 7 5 3 9 9 C 1.46499 * 120.00199 * 180.27479 * 7 5 3 10 10 H 1.09005 * 109.47049 * 0.02562 * 9 7 5 11 11 C 1.53000 * 109.47264 * 120.00374 * 9 7 5 12 12 N 1.46504 * 109.46807 * 305.00090 * 11 9 7 13 13 C 1.36933 * 119.99978 * 179.97438 * 12 11 9 14 14 H 1.08004 * 119.99952 * 359.97438 * 13 12 11 15 15 C 1.38819 * 120.00393 * 180.02562 * 13 12 11 16 16 N 1.31614 * 119.99555 * 359.97438 * 15 13 12 17 17 Si 1.86797 * 120.00373 * 179.97438 * 15 13 12 18 18 H 1.48508 * 109.47154 * 359.97438 * 17 15 13 19 19 H 1.48499 * 109.46994 * 119.99683 * 17 15 13 20 20 H 1.48493 * 109.47127 * 240.00008 * 17 15 13 21 21 C 1.53000 * 109.47359 * 240.00361 * 9 7 5 22 22 C 1.52999 * 117.49656 * 248.74302 * 21 9 7 23 23 C 1.53001 * 117.49754 * 180.08467 * 21 9 7 24 24 C 1.53003 * 109.47189 * 150.00312 * 3 2 1 25 25 C 1.53000 * 109.47122 * 59.99365 * 24 3 2 26 26 C 1.53003 * 109.47122 * 179.97438 * 25 24 3 27 27 C 1.53003 * 109.46830 * 60.00476 * 26 25 24 28 28 C 1.53008 * 109.47117 * 300.00061 * 27 26 25 29 29 C 1.52995 * 109.47104 * 59.99826 * 28 27 26 30 30 H 1.08997 * 109.47018 * 60.00408 * 1 2 3 31 31 H 1.09001 * 109.46977 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.47179 * 299.99744 * 1 2 3 33 33 H 1.08998 * 109.46921 * 89.99095 * 8 7 5 34 34 H 1.08994 * 109.46996 * 209.99677 * 8 7 5 35 35 H 1.09001 * 109.46578 * 329.99540 * 8 7 5 36 36 H 1.08997 * 109.47347 * 65.00139 * 11 9 7 37 37 H 1.09000 * 109.47615 * 185.00720 * 11 9 7 38 38 H 0.96994 * 120.00463 * 0.02562 * 12 11 9 39 39 H 0.96999 * 120.00034 * 180.02562 * 16 15 13 40 40 H 1.08995 * 115.54676 * 34.41942 * 21 9 7 41 41 H 1.08994 * 117.50461 * 0.02562 * 22 21 9 42 42 H 1.09006 * 117.49321 * 145.02284 * 22 21 9 43 43 H 1.08999 * 117.50179 * 214.97760 * 23 21 9 44 44 H 1.08997 * 117.50168 * 359.97438 * 23 21 9 45 45 H 1.09000 * 109.47390 * 179.97438 * 24 3 2 46 46 H 1.09000 * 109.47322 * 300.00451 * 25 24 3 47 47 H 1.09003 * 109.46893 * 60.00574 * 25 24 3 48 48 H 1.08999 * 109.46927 * 300.00669 * 26 25 24 49 49 H 1.08989 * 109.47209 * 180.02562 * 26 25 24 50 50 H 1.08996 * 109.47133 * 180.02562 * 27 26 25 51 51 H 1.09000 * 109.47188 * 59.99809 * 27 26 25 52 52 H 1.09007 * 109.46729 * 300.00263 * 28 27 26 53 53 H 1.08994 * 109.47277 * 180.02562 * 28 27 26 54 54 H 1.09003 * 109.46928 * 180.02562 * 29 28 27 55 55 H 1.09000 * 109.47161 * 60.00276 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3449 1.9994 0.5138 5 6 2.2145 1.7644 -1.4208 6 8 1.9791 1.0106 -2.3414 7 7 2.6534 3.0143 -1.6688 8 6 2.9378 3.9249 -0.5569 9 6 2.8463 3.4624 -3.0502 10 1 2.5854 2.6547 -3.7340 11 6 1.9497 4.6715 -3.3240 12 7 0.5602 4.3303 -3.0092 13 6 -0.4287 5.2626 -3.1768 14 1 -0.1842 6.2496 -3.5407 15 6 -1.7453 4.9395 -2.8780 16 7 -2.0431 3.7368 -2.4341 17 14 -3.0941 6.2115 -3.1060 18 1 -2.5018 7.4757 -3.6125 19 1 -4.0917 5.7055 -4.0827 20 1 -3.7608 6.4648 -1.8036 21 6 4.3102 3.8554 -3.2592 22 6 4.6195 5.3379 -3.4768 23 6 4.7160 4.3557 -4.6470 24 6 3.3589 1.2634 0.7212 25 6 4.2927 0.2894 0.0000 26 6 5.6417 0.2477 0.7208 27 6 5.4348 -0.2178 2.1635 28 6 4.5009 0.7562 2.8848 29 6 3.1520 0.7978 2.1639 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 3.9792 3.8150 -0.2545 34 1 2.7579 4.9522 -0.8735 35 1 2.2878 3.6849 0.2845 36 1 2.2681 5.5083 -2.7024 37 1 2.0261 4.9500 -4.3751 38 1 0.3407 3.4442 -2.6813 39 1 -2.9631 3.5108 -2.2257 40 1 5.0391 3.2652 -2.7039 41 1 3.7803 6.0333 -3.4706 42 1 5.5523 5.7230 -3.0649 43 1 5.7122 4.0953 -5.0045 44 1 3.9403 4.4046 -5.4111 45 1 3.8024 2.2591 0.7208 46 1 3.8494 -0.7064 0.0000 47 1 4.4405 0.6213 -1.0277 48 1 6.0847 1.2436 0.7204 49 1 6.3070 -0.4458 0.2068 50 1 6.3956 -0.2471 2.6772 51 1 4.9917 -1.2137 2.1639 52 1 4.9440 1.7521 2.8843 53 1 4.3538 0.4248 3.9127 54 1 2.4869 1.4921 2.6775 55 1 2.7089 -0.1980 2.1643 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001571374050.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:30:30 Heat of formation + Delta-G solvation = -71.366883 kcal Electronic energy + Delta-G solvation = -32620.841857 eV Core-core repulsion = 28657.929471 eV Total energy + Delta-G solvation = -3962.912386 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.76434 -39.89168 -38.74617 -37.87706 -36.41555 -35.83006 -33.40726 -32.65677 -31.60172 -29.91114 -28.32095 -27.69314 -26.99279 -25.77226 -24.10324 -23.52274 -23.11469 -22.69351 -21.15456 -20.58686 -19.97667 -19.07469 -18.32739 -17.81921 -17.30445 -17.05954 -16.64057 -16.20042 -16.16066 -15.68344 -15.40952 -15.08084 -15.06535 -14.98879 -14.83455 -14.60184 -14.51237 -14.20529 -13.87349 -13.68301 -13.23973 -13.12225 -13.08565 -12.97840 -12.94991 -12.78093 -12.74629 -12.36585 -12.24926 -12.21195 -11.99297 -11.94540 -11.89279 -11.77023 -11.60664 -11.31406 -11.23902 -11.07722 -11.00906 -10.88311 -10.86081 -10.15818 -9.56526 -9.02533 -7.95801 -5.26032 1.44001 1.45584 1.55335 1.62629 1.92119 2.52858 2.76544 2.94543 3.37264 3.42318 3.61845 3.67120 3.80509 3.88950 3.96749 4.06821 4.08648 4.14633 4.24303 4.30036 4.34521 4.39068 4.40092 4.41702 4.49678 4.52597 4.57385 4.60588 4.68098 4.70953 4.73895 4.78097 4.79154 4.82691 4.86890 4.98229 5.05730 5.06999 5.12482 5.19884 5.23595 5.31174 5.33426 5.33691 5.35696 5.41147 5.45881 5.47266 5.62266 5.66041 5.97557 6.23696 6.45905 7.22535 7.30316 8.04802 8.29163 9.27410 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.010699 B = 0.004163 C = 0.003342 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2616.447547 B = 6724.264232 C = 8376.019449 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.367 6.367 3 C 0.082 3.918 4 H 0.087 0.913 5 C 0.491 3.509 6 O -0.581 6.581 7 N -0.590 5.590 8 C 0.075 3.925 9 C 0.168 3.832 10 H 0.060 0.940 11 C 0.146 3.854 12 N -0.741 5.741 13 C -0.243 4.243 14 H 0.078 0.922 15 C -0.073 4.073 16 N -0.968 5.968 17 Si 0.974 3.026 18 H -0.264 1.264 19 H -0.298 1.298 20 H -0.291 1.291 21 C -0.163 4.163 22 C -0.164 4.164 23 C -0.173 4.173 24 C -0.073 4.073 25 C -0.106 4.106 26 C -0.112 4.112 27 C -0.118 4.118 28 C -0.113 4.113 29 C -0.109 4.109 30 H 0.012 0.988 31 H 0.105 0.895 32 H 0.059 0.941 33 H 0.090 0.910 34 H 0.073 0.927 35 H 0.072 0.928 36 H 0.045 0.955 37 H 0.024 0.976 38 H 0.370 0.630 39 H 0.249 0.751 40 H 0.116 0.884 41 H 0.093 0.907 42 H 0.119 0.881 43 H 0.115 0.885 44 H 0.081 0.919 45 H 0.109 0.891 46 H 0.049 0.951 47 H 0.035 0.965 48 H 0.073 0.927 49 H 0.061 0.939 50 H 0.076 0.924 51 H 0.053 0.947 52 H 0.074 0.926 53 H 0.073 0.927 54 H 0.070 0.930 55 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.140 -2.084 11.534 22.443 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.284 6.284 3 C 0.021 3.979 4 H 0.105 0.895 5 C 0.280 3.720 6 O -0.461 6.461 7 N -0.322 5.322 8 C -0.066 4.066 9 C 0.064 3.936 10 H 0.078 0.922 11 C 0.019 3.981 12 N -0.384 5.384 13 C -0.375 4.375 14 H 0.096 0.904 15 C -0.266 4.266 16 N -0.618 5.618 17 Si 0.803 3.197 18 H -0.188 1.188 19 H -0.226 1.226 20 H -0.218 1.218 21 C -0.182 4.182 22 C -0.201 4.201 23 C -0.210 4.210 24 C -0.091 4.091 25 C -0.144 4.144 26 C -0.149 4.149 27 C -0.155 4.155 28 C -0.150 4.150 29 C -0.147 4.147 30 H 0.031 0.969 31 H 0.123 0.877 32 H 0.077 0.923 33 H 0.108 0.892 34 H 0.091 0.909 35 H 0.090 0.910 36 H 0.063 0.937 37 H 0.041 0.959 38 H 0.201 0.799 39 H 0.058 0.942 40 H 0.134 0.866 41 H 0.111 0.889 42 H 0.137 0.863 43 H 0.133 0.867 44 H 0.100 0.900 45 H 0.126 0.874 46 H 0.068 0.932 47 H 0.054 0.946 48 H 0.091 0.909 49 H 0.080 0.920 50 H 0.094 0.906 51 H 0.072 0.928 52 H 0.092 0.908 53 H 0.092 0.908 54 H 0.088 0.912 55 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 19.064 -2.468 11.019 22.157 hybrid contribution -1.941 0.173 -0.726 2.080 sum 17.123 -2.295 10.293 20.110 Atomic orbital electron populations 1.22866 0.80223 1.03678 0.99669 1.87879 1.20374 1.25813 1.94297 1.22250 0.98490 0.86246 0.90945 0.89543 1.21823 0.75755 0.81580 0.92821 1.90651 1.52242 1.55397 1.47764 1.47704 1.65059 1.12281 1.07180 1.22057 1.01939 0.94290 0.88359 1.20557 0.93878 0.96007 0.83184 0.92162 1.21261 0.83916 0.95516 0.97389 1.42529 1.02514 1.13926 1.79412 1.19660 0.87996 0.94309 1.35509 0.90392 1.25570 0.99609 0.98650 1.02754 1.69872 1.18080 1.21108 1.52759 0.85071 0.79150 0.78695 0.76802 1.18804 1.22569 1.21783 1.22383 0.94507 0.99187 1.02123 1.23209 1.03954 0.91243 1.01660 1.23037 1.03168 1.03921 0.90911 1.21437 0.90367 1.01770 0.95553 1.21417 0.96192 0.99127 0.97621 1.21498 0.95335 1.02089 0.95984 1.21540 1.00036 0.98937 0.95030 1.21510 0.94221 1.00351 0.98925 1.21519 0.98569 1.01779 0.92802 0.96946 0.87664 0.92264 0.89205 0.90858 0.90983 0.93696 0.95872 0.79883 0.94210 0.86602 0.88861 0.86285 0.86663 0.90012 0.87363 0.93175 0.94616 0.90873 0.92010 0.90586 0.92842 0.90751 0.90834 0.91155 0.92313 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.07 10.81 113.37 1.23 2.29 16 2 O -0.37 -12.66 8.54 -129.99 -1.11 -13.77 16 3 C 0.08 2.58 1.45 29.85 0.04 2.62 16 4 H 0.09 2.66 6.77 -2.39 -0.02 2.65 16 5 C 0.49 19.04 5.49 87.66 0.48 19.52 16 6 O -0.58 -28.39 15.83 15.95 0.25 -28.14 16 7 N -0.59 -19.86 2.24 -822.58 -1.85 -21.71 16 8 C 0.08 1.89 8.29 127.77 1.06 2.95 16 9 C 0.17 6.01 2.59 44.99 0.12 6.12 16 10 H 0.06 2.67 6.90 -2.38 -0.02 2.65 16 11 C 0.15 5.92 4.14 86.38 0.36 6.27 16 12 N -0.74 -39.08 5.43 -343.44 -1.87 -40.94 16 13 C -0.24 -13.74 9.99 84.04 0.84 -12.90 16 14 H 0.08 4.18 7.83 -2.91 -0.02 4.16 16 15 C -0.07 -4.28 5.50 84.86 0.47 -3.82 16 16 N -0.97 -60.72 13.06 21.65 0.28 -60.43 16 17 Si 0.97 46.61 29.55 68.60 2.03 48.64 16 18 H -0.26 -11.75 7.11 99.48 0.71 -11.04 16 19 H -0.30 -14.49 7.11 99.48 0.71 -13.78 16 20 H -0.29 -13.75 7.11 99.48 0.71 -13.04 16 21 C -0.16 -4.20 5.48 -10.79 -0.06 -4.26 16 22 C -0.16 -3.48 9.59 30.62 0.29 -3.19 16 23 C -0.17 -3.97 9.94 30.62 0.30 -3.67 16 24 C -0.07 -1.65 1.81 -10.79 -0.02 -1.67 16 25 C -0.11 -2.59 4.81 30.60 0.15 -2.45 16 26 C -0.11 -1.94 5.92 30.60 0.18 -1.75 16 27 C -0.12 -1.74 5.92 30.60 0.18 -1.56 16 28 C -0.11 -1.57 5.92 30.60 0.18 -1.38 16 29 C -0.11 -2.04 5.06 30.59 0.15 -1.88 16 30 H 0.01 0.50 8.14 -2.39 -0.02 0.48 16 31 H 0.11 2.97 8.14 -2.39 -0.02 2.95 16 32 H 0.06 1.71 8.08 -2.39 -0.02 1.69 16 33 H 0.09 1.58 7.04 -2.39 -0.02 1.56 16 34 H 0.07 1.93 6.53 -2.39 -0.02 1.92 16 35 H 0.07 1.73 6.06 -2.39 -0.01 1.72 16 36 H 0.05 1.68 5.34 -2.39 -0.01 1.67 16 37 H 0.02 0.97 7.44 -2.39 -0.02 0.95 16 38 H 0.37 21.69 7.06 -92.71 -0.65 21.03 16 39 H 0.25 15.14 8.31 -92.71 -0.77 14.37 16 40 H 0.12 2.73 8.14 -2.39 -0.02 2.71 16 41 H 0.09 2.26 5.80 -2.39 -0.01 2.24 16 42 H 0.12 1.87 8.14 -2.38 -0.02 1.85 16 43 H 0.12 2.11 8.14 -2.39 -0.02 2.09 16 44 H 0.08 2.14 7.66 -2.39 -0.02 2.13 16 45 H 0.11 2.03 5.14 -2.39 -0.01 2.02 16 46 H 0.05 1.44 7.68 -2.39 -0.02 1.42 16 47 H 0.04 1.04 7.22 -2.39 -0.02 1.02 16 48 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 49 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 50 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 51 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 52 H 0.07 0.87 8.14 -2.38 -0.02 0.85 16 53 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 54 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 55 H 0.06 1.28 7.68 -2.39 -0.02 1.26 16 Total: -1.00 -75.63 414.95 3.91 -71.73 By element: Atomic # 1 Polarization: 43.16 SS G_CDS: 0.21 Total: 43.37 kcal Atomic # 6 Polarization: -4.70 SS G_CDS: 5.95 Total: 1.26 kcal Atomic # 7 Polarization: -119.66 SS G_CDS: -3.43 Total: -123.09 kcal Atomic # 8 Polarization: -41.05 SS G_CDS: -0.86 Total: -41.91 kcal Atomic # 14 Polarization: 46.61 SS G_CDS: 2.03 Total: 48.64 kcal Total: -75.63 3.91 -71.73 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001571374050.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.359 kcal (2) G-P(sol) polarization free energy of solvation -75.632 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.273 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.907 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.725 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.367 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds