Wall clock time and date at job start Tue Mar 31 2020 22:30:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42906 * 113.99775 * 2 1 4 4 H 1.08997 * 109.47242 * 15.12337 * 3 2 1 5 5 C 1.50702 * 109.47033 * 135.11729 * 3 2 1 6 6 O 1.21282 * 120.00210 * 10.34745 * 5 3 2 7 7 N 1.34779 * 120.00064 * 190.33920 * 5 3 2 8 8 C 1.46500 * 119.99550 * 355.74116 * 7 5 3 9 9 C 1.46496 * 120.00090 * 175.73589 * 7 5 3 10 10 H 1.08996 * 109.47213 * 0.02562 * 9 7 5 11 11 C 1.53000 * 109.47007 * 240.00357 * 9 7 5 12 12 N 1.46494 * 109.47329 * 55.00357 * 11 9 7 13 13 C 1.36939 * 120.00083 * 180.02562 * 12 11 9 14 14 H 1.07997 * 119.99916 * 359.97438 * 13 12 11 15 15 C 1.38807 * 119.99754 * 179.97438 * 13 12 11 16 16 N 1.31626 * 119.99913 * 179.97438 * 15 13 12 17 17 Si 1.86802 * 120.00256 * 359.97438 * 15 13 12 18 18 H 1.48502 * 109.46978 * 90.00595 * 17 15 13 19 19 H 1.48504 * 109.47113 * 210.00047 * 17 15 13 20 20 H 1.48496 * 109.47199 * 330.00108 * 17 15 13 21 21 C 1.52996 * 109.47165 * 120.00289 * 9 7 5 22 22 C 1.52995 * 117.50188 * 116.25198 * 21 9 7 23 23 C 1.53003 * 117.50336 * 184.91551 * 21 9 7 24 24 C 1.52997 * 109.46882 * 255.11774 * 3 2 1 25 25 C 1.53000 * 109.47293 * 61.03858 * 24 3 2 26 26 C 1.52997 * 109.47494 * 179.97438 * 25 24 3 27 27 C 1.53000 * 109.46920 * 59.99970 * 26 25 24 28 28 C 1.53000 * 109.47061 * 300.00295 * 27 26 25 29 29 C 1.52997 * 109.47494 * 60.00056 * 28 27 26 30 30 H 1.09001 * 109.47379 * 304.74468 * 1 2 3 31 31 H 1.08995 * 109.46945 * 64.75047 * 1 2 3 32 32 H 1.09000 * 109.46595 * 184.75188 * 1 2 3 33 33 H 1.09007 * 109.46656 * 275.00378 * 8 7 5 34 34 H 1.08993 * 109.47399 * 35.00526 * 8 7 5 35 35 H 1.08999 * 109.46460 * 155.00954 * 8 7 5 36 36 H 1.09007 * 109.46580 * 175.00040 * 11 9 7 37 37 H 1.08995 * 109.47183 * 294.99480 * 11 9 7 38 38 H 0.97005 * 120.00115 * 359.97438 * 12 11 9 39 39 H 0.96998 * 120.00271 * 179.97438 * 16 15 13 40 40 H 1.09007 * 115.55281 * 330.58173 * 21 9 7 41 41 H 1.09005 * 117.50321 * 215.00241 * 22 21 9 42 42 H 1.09004 * 117.49642 * 0.02562 * 22 21 9 43 43 H 1.09001 * 117.49531 * 359.97275 * 23 21 9 44 44 H 1.08995 * 117.50488 * 144.99489 * 23 21 9 45 45 H 1.09002 * 109.46859 * 181.04025 * 24 3 2 46 46 H 1.09001 * 109.46985 * 300.00333 * 25 24 3 47 47 H 1.09006 * 109.47064 * 59.99509 * 25 24 3 48 48 H 1.09002 * 109.47030 * 300.00394 * 26 25 24 49 49 H 1.08999 * 109.47072 * 180.02562 * 26 25 24 50 50 H 1.08996 * 109.46920 * 180.02562 * 27 26 25 51 51 H 1.09002 * 109.46922 * 60.00358 * 27 26 25 52 52 H 1.09001 * 109.46985 * 299.99390 * 28 27 26 53 53 H 1.09006 * 109.47064 * 180.02562 * 28 27 26 54 54 H 1.08999 * 109.47072 * 179.97438 * 29 28 27 55 55 H 1.09002 * 109.47030 * 59.99606 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.2517 2.0409 0.2681 5 6 3.1342 1.3550 1.0026 6 8 3.5349 0.3316 1.5155 7 7 3.6943 2.5365 1.3293 8 6 3.2752 3.7607 0.6423 9 6 4.7221 2.5967 2.3715 10 1 4.9005 1.5957 2.7641 11 6 4.2486 3.5117 3.5026 12 7 2.9471 3.0501 3.9917 13 6 2.3218 3.7191 5.0099 14 1 2.7882 4.5868 5.4525 15 6 1.0884 3.2820 5.4729 16 7 0.4875 3.9247 6.4519 17 14 0.2812 1.7817 4.7068 18 1 0.7093 0.5619 5.4377 19 1 -1.1952 1.9166 4.7911 20 1 0.6879 1.6738 3.2827 21 6 6.0191 3.1495 1.7774 22 6 6.5324 4.4845 2.3207 23 6 7.2527 3.1830 2.6819 24 6 2.5560 1.6207 -1.3941 25 6 1.4105 1.5959 -2.4080 26 6 1.9561 1.9117 -3.8020 27 6 3.0026 0.8649 -4.1892 28 6 4.1482 0.8897 -3.1753 29 6 3.6025 0.5739 -1.7813 30 1 -0.3634 0.5857 0.8444 31 1 -0.3633 0.4383 -0.9294 32 1 -0.3632 -1.0242 0.0851 33 1 3.8389 3.8683 -0.2845 34 1 2.2106 3.7037 0.4155 35 1 3.4644 4.6207 1.2846 36 1 4.9725 3.4869 4.3171 37 1 4.1558 4.5318 3.1300 38 1 2.5279 2.2710 3.5939 39 1 -0.3745 3.6196 6.7753 40 1 6.1769 2.9430 0.7188 41 1 7.0277 5.1563 1.6196 42 1 5.9462 4.9687 3.1018 43 1 7.1400 2.8115 3.7005 44 1 8.2218 2.9985 2.2185 45 1 3.0158 2.6090 -1.3894 46 1 0.9507 0.6076 -2.4126 47 1 0.6651 2.3420 -2.1323 48 1 2.4156 2.9002 -3.7970 49 1 1.1399 1.8945 -4.5242 50 1 3.3917 1.0901 -5.1821 51 1 2.5431 -0.1236 -4.1942 52 1 4.6077 1.8781 -3.1704 53 1 4.8940 0.1441 -3.4514 54 1 4.4187 0.5911 -1.0591 55 1 3.1430 -0.4146 -1.7863 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001571374051.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:30:34 Heat of formation + Delta-G solvation = -68.228265 kcal Electronic energy + Delta-G solvation = -32738.825953 eV Core-core repulsion = 28776.049667 eV Total energy + Delta-G solvation = -3962.776285 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.83308 -40.05053 -38.77491 -37.93171 -36.57170 -35.93100 -33.60911 -32.80416 -31.66586 -30.23698 -28.62774 -27.84027 -26.91858 -25.67878 -23.94574 -23.53237 -23.04104 -22.75011 -21.27946 -20.69827 -20.32467 -19.35750 -18.38441 -17.81949 -17.41428 -17.13035 -16.77416 -16.36833 -16.09385 -15.79706 -15.44374 -15.38515 -15.08098 -15.04282 -14.82539 -14.77251 -14.50086 -14.23020 -13.96807 -13.72827 -13.50215 -13.27201 -13.18479 -13.14654 -13.04520 -12.87493 -12.82268 -12.46748 -12.36187 -12.27893 -12.04593 -12.00642 -11.90084 -11.87123 -11.49098 -11.39777 -11.20606 -11.16449 -11.10123 -10.89743 -10.80041 -10.28573 -9.65732 -9.36574 -8.10778 -5.42004 1.21233 1.29538 1.32337 1.50071 1.73040 2.36445 2.81031 2.91806 3.21415 3.34546 3.47850 3.54852 3.72815 3.85230 3.89628 3.97813 4.00166 4.07871 4.14628 4.25035 4.28311 4.33735 4.36072 4.36984 4.44855 4.46261 4.51333 4.56957 4.63872 4.65227 4.70520 4.71695 4.75769 4.79103 4.84539 4.94968 5.02064 5.04617 5.06920 5.15822 5.21452 5.24736 5.29688 5.30925 5.32679 5.37804 5.42848 5.52226 5.60408 5.69407 5.96692 6.13900 6.36164 6.98840 7.10776 7.75824 7.93752 9.10719 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.010039 B = 0.004850 C = 0.003637 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2788.349828 B = 5771.260160 C = 7696.829916 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.380 6.380 3 C 0.076 3.924 4 H 0.092 0.908 5 C 0.503 3.497 6 O -0.574 6.574 7 N -0.594 5.594 8 C 0.070 3.930 9 C 0.165 3.835 10 H 0.070 0.930 11 C 0.148 3.852 12 N -0.757 5.757 13 C -0.225 4.225 14 H 0.069 0.931 15 C -0.050 4.050 16 N -0.975 5.975 17 Si 0.939 3.061 18 H -0.294 1.294 19 H -0.283 1.283 20 H -0.270 1.270 21 C -0.160 4.160 22 C -0.167 4.167 23 C -0.173 4.173 24 C -0.090 4.090 25 C -0.114 4.114 26 C -0.112 4.112 27 C -0.118 4.118 28 C -0.112 4.112 29 C -0.104 4.104 30 H 0.029 0.971 31 H 0.075 0.925 32 H 0.099 0.901 33 H 0.091 0.909 34 H 0.072 0.928 35 H 0.080 0.920 36 H 0.034 0.966 37 H 0.052 0.948 38 H 0.358 0.642 39 H 0.259 0.741 40 H 0.119 0.881 41 H 0.118 0.882 42 H 0.093 0.907 43 H 0.083 0.917 44 H 0.115 0.885 45 H 0.104 0.896 46 H 0.062 0.938 47 H 0.073 0.927 48 H 0.072 0.928 49 H 0.074 0.926 50 H 0.074 0.926 51 H 0.054 0.946 52 H 0.071 0.929 53 H 0.060 0.940 54 H 0.035 0.965 55 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.073 -0.649 -25.949 26.903 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.298 6.298 3 C 0.015 3.985 4 H 0.110 0.890 5 C 0.292 3.708 6 O -0.453 6.453 7 N -0.327 5.327 8 C -0.071 4.071 9 C 0.061 3.939 10 H 0.088 0.912 11 C 0.021 3.979 12 N -0.402 5.402 13 C -0.356 4.356 14 H 0.087 0.913 15 C -0.242 4.242 16 N -0.626 5.626 17 Si 0.769 3.231 18 H -0.221 1.221 19 H -0.209 1.209 20 H -0.196 1.196 21 C -0.180 4.180 22 C -0.204 4.204 23 C -0.210 4.210 24 C -0.109 4.109 25 C -0.152 4.152 26 C -0.150 4.150 27 C -0.156 4.156 28 C -0.150 4.150 29 C -0.142 4.142 30 H 0.048 0.952 31 H 0.093 0.907 32 H 0.118 0.882 33 H 0.109 0.891 34 H 0.091 0.909 35 H 0.098 0.902 36 H 0.052 0.948 37 H 0.069 0.931 38 H 0.190 0.810 39 H 0.068 0.932 40 H 0.137 0.863 41 H 0.136 0.864 42 H 0.111 0.889 43 H 0.102 0.898 44 H 0.133 0.867 45 H 0.122 0.878 46 H 0.080 0.920 47 H 0.092 0.908 48 H 0.091 0.909 49 H 0.092 0.908 50 H 0.093 0.907 51 H 0.072 0.928 52 H 0.089 0.911 53 H 0.079 0.921 54 H 0.054 0.946 55 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 7.355 -1.178 -25.530 26.594 hybrid contribution -1.048 -1.029 0.759 1.654 sum 6.307 -2.208 -24.770 25.656 Atomic orbital electron populations 1.23190 0.79580 1.04032 1.01054 1.87959 1.21014 1.25982 1.94818 1.22216 0.94086 0.86834 0.95364 0.89030 1.21196 0.83877 0.83131 0.82598 1.90654 1.63989 1.35004 1.55701 1.47747 1.39317 1.07778 1.37838 1.22122 1.00837 0.86102 0.98048 1.20663 0.86780 0.99463 0.86962 0.91203 1.21293 0.86005 0.96753 0.93801 1.42742 1.21194 1.34300 1.41932 1.19058 1.00147 1.08070 1.08354 0.91337 1.25224 0.98420 1.01321 0.99217 1.69826 1.17886 1.43602 1.31308 0.85666 0.78164 0.80586 0.78693 1.22123 1.20893 1.19578 1.22377 0.92908 1.02989 0.99678 1.23222 1.03024 0.90451 1.03719 1.23053 0.96149 1.01871 0.99975 1.21646 0.97618 1.00851 0.90744 1.21640 0.96506 1.02273 0.94736 1.21495 0.98724 0.99352 0.95400 1.21536 0.96008 0.99347 0.98661 1.21501 0.97976 1.02025 0.93488 1.21378 0.96984 0.98618 0.97180 0.95205 0.90709 0.88242 0.89116 0.90911 0.90168 0.94819 0.93064 0.80971 0.93210 0.86326 0.86389 0.88910 0.89833 0.86706 0.87795 0.91973 0.90801 0.90891 0.90751 0.90742 0.92755 0.91078 0.92135 0.94649 0.93083 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.42 10.39 113.37 1.18 1.60 16 2 O -0.38 -11.98 8.76 -130.15 -1.14 -13.12 16 3 C 0.08 2.16 1.60 29.85 0.05 2.21 16 4 H 0.09 2.44 6.45 -2.39 -0.02 2.43 16 5 C 0.50 17.88 5.54 87.66 0.49 18.37 16 6 O -0.57 -25.81 15.87 15.79 0.25 -25.56 16 7 N -0.59 -18.24 2.24 -822.61 -1.85 -20.09 16 8 C 0.07 1.57 8.38 127.77 1.07 2.64 16 9 C 0.17 5.42 2.55 44.99 0.11 5.53 16 10 H 0.07 2.78 6.91 -2.39 -0.02 2.77 16 11 C 0.15 5.63 4.10 86.38 0.35 5.99 16 12 N -0.76 -37.04 5.24 -343.47 -1.80 -38.84 16 13 C -0.23 -13.01 10.47 84.03 0.88 -12.13 16 14 H 0.07 4.21 8.06 -2.91 -0.02 4.19 16 15 C -0.05 -2.99 5.50 84.86 0.47 -2.52 16 16 N -0.98 -62.80 13.97 21.65 0.30 -62.50 16 17 Si 0.94 48.86 27.74 68.60 1.90 50.76 16 18 H -0.29 -15.73 7.11 99.48 0.71 -15.03 16 19 H -0.28 -14.26 7.11 99.48 0.71 -13.55 16 20 H -0.27 -13.35 6.52 99.48 0.65 -12.70 16 21 C -0.16 -3.81 5.48 -10.80 -0.06 -3.87 16 22 C -0.17 -3.40 9.50 30.62 0.29 -3.11 16 23 C -0.17 -3.73 10.00 30.62 0.31 -3.43 16 24 C -0.09 -1.81 1.87 -10.79 -0.02 -1.83 16 25 C -0.11 -1.77 4.30 30.59 0.13 -1.64 16 26 C -0.11 -1.34 5.92 30.59 0.18 -1.15 16 27 C -0.12 -1.56 5.92 30.59 0.18 -1.38 16 28 C -0.11 -1.80 5.92 30.59 0.18 -1.62 16 29 C -0.10 -2.34 4.82 30.59 0.15 -2.20 16 30 H 0.03 0.79 8.04 -2.39 -0.02 0.77 16 31 H 0.07 1.33 6.37 -2.39 -0.02 1.32 16 32 H 0.10 2.12 8.14 -2.39 -0.02 2.10 16 33 H 0.09 1.37 6.95 -2.38 -0.02 1.36 16 34 H 0.07 1.52 6.27 -2.39 -0.01 1.51 16 35 H 0.08 1.86 6.53 -2.39 -0.02 1.85 16 36 H 0.03 1.33 7.59 -2.38 -0.02 1.31 16 37 H 0.05 1.82 5.59 -2.39 -0.01 1.81 16 38 H 0.36 18.13 4.93 -92.70 -0.46 17.67 16 39 H 0.26 15.91 8.31 -92.71 -0.77 15.14 16 40 H 0.12 2.53 8.14 -2.38 -0.02 2.51 16 41 H 0.12 1.80 8.14 -2.38 -0.02 1.78 16 42 H 0.09 2.20 5.80 -2.38 -0.01 2.18 16 43 H 0.08 2.05 7.98 -2.39 -0.02 2.03 16 44 H 0.11 1.97 8.14 -2.39 -0.02 1.95 16 45 H 0.10 1.72 5.43 -2.39 -0.01 1.71 16 46 H 0.06 1.09 6.49 -2.39 -0.02 1.07 16 47 H 0.07 0.99 8.14 -2.38 -0.02 0.97 16 48 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 49 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 50 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 51 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 52 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 53 H 0.06 0.97 8.14 -2.38 -0.02 0.95 16 54 H 0.03 0.97 7.25 -2.39 -0.02 0.95 16 55 H 0.05 1.36 7.66 -2.39 -0.02 1.34 16 Total: -1.00 -77.54 408.99 3.96 -73.57 By element: Atomic # 1 Polarization: 33.98 SS G_CDS: 0.36 Total: 34.33 kcal Atomic # 6 Polarization: -4.49 SS G_CDS: 5.94 Total: 1.45 kcal Atomic # 7 Polarization: -118.09 SS G_CDS: -3.34 Total: -121.43 kcal Atomic # 8 Polarization: -37.80 SS G_CDS: -0.89 Total: -38.69 kcal Atomic # 14 Polarization: 48.86 SS G_CDS: 1.90 Total: 50.76 kcal Total: -77.54 3.96 -73.57 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001571374051.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.346 kcal (2) G-P(sol) polarization free energy of solvation -77.540 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.193 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.965 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.575 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.228 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds