Wall clock time and date at job start Tue Mar 31 2020 22:02:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.42902 * 109.47076 * 2 1 4 4 C 1.42901 * 113.99824 * 179.33927 * 3 2 1 5 5 H 1.09002 * 109.47104 * 344.58161 * 4 3 2 6 6 C 1.53000 * 109.47042 * 224.58344 * 4 3 2 7 7 C 1.50698 * 109.47265 * 64.99676 * 6 4 3 8 8 O 1.21288 * 120.00066 * 0.02562 * 7 6 4 9 9 N 1.34777 * 120.00321 * 179.97438 * 7 6 4 10 10 C 1.46493 * 120.00088 * 180.02562 * 9 7 6 11 11 C 1.51225 * 111.06437 * 68.34858 * 10 9 7 12 12 C 1.55695 * 104.60964 * 83.87395 * 11 10 9 13 13 C 1.55472 * 106.00130 * 7.56503 * 12 11 10 14 14 C 1.50517 * 102.13549 * 23.78557 * 13 12 11 15 15 H 1.08998 * 107.75648 * 67.25731 * 14 13 12 16 16 N 1.42710 * 128.14806 * 199.15792 * 14 13 12 17 17 C 1.36934 * 127.10393 * 331.71359 * 16 14 13 18 18 H 1.07997 * 119.99851 * 8.63606 * 17 16 14 19 19 C 1.38810 * 120.00095 * 188.64439 * 17 16 14 20 20 N 1.31617 * 120.00064 * 207.72797 * 19 17 16 21 21 Si 1.86803 * 120.00288 * 28.00161 * 19 17 16 22 22 H 1.48494 * 109.46892 * 269.72845 * 21 19 17 23 23 H 1.48501 * 109.46637 * 29.72437 * 21 19 17 24 24 H 1.48492 * 109.47195 * 149.72359 * 21 19 17 25 25 C 1.49300 * 105.79451 * 151.97255 * 16 14 13 26 26 C 1.52125 * 111.08929 * 288.30929 * 10 9 7 27 27 C 1.53002 * 109.47196 * 104.58048 * 4 3 2 28 28 C 1.52994 * 109.47508 * 294.23022 * 27 4 3 29 29 C 1.52999 * 109.46789 * 54.23032 * 27 4 3 30 30 H 1.08998 * 109.47151 * 60.00394 * 1 2 3 31 31 H 1.09001 * 109.47246 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.47293 * 300.00212 * 1 2 3 33 33 H 1.09000 * 109.47293 * 239.99788 * 2 1 3 34 34 H 1.08998 * 109.47151 * 119.99606 * 2 1 3 35 35 H 1.09005 * 109.46797 * 304.99857 * 6 4 3 36 36 H 1.09003 * 109.47012 * 185.00363 * 6 4 3 37 37 H 0.96999 * 119.99826 * 0.02562 * 9 7 6 38 38 H 1.09008 * 110.40702 * 202.65186 * 11 10 9 39 39 H 1.08992 * 110.41229 * 324.96920 * 11 10 9 40 40 H 1.09001 * 110.16151 * 126.36469 * 12 11 10 41 41 H 1.08999 * 110.15919 * 248.06343 * 12 11 10 42 42 H 1.09000 * 110.39072 * 265.72083 * 13 12 11 43 43 H 1.09000 * 111.19082 * 142.21098 * 13 12 11 44 44 H 0.97003 * 119.99689 * 355.23593 * 20 19 17 45 45 H 1.08998 * 110.04507 * 110.34038 * 25 16 14 46 46 H 1.09001 * 110.04797 * 231.81588 * 25 16 14 47 47 H 1.09003 * 111.15184 * 43.92942 * 26 10 9 48 48 H 1.09002 * 111.15401 * 168.15137 * 26 10 9 49 49 H 1.09001 * 109.46897 * 174.22324 * 27 4 3 50 50 H 1.09007 * 109.47358 * 63.33570 * 28 27 4 51 51 H 1.08999 * 109.47392 * 183.33990 * 28 27 4 52 52 H 1.09003 * 109.46941 * 303.34287 * 28 27 4 53 53 H 1.09007 * 109.47490 * 59.99704 * 29 27 4 54 54 H 1.09008 * 109.47411 * 179.97438 * 29 27 4 55 55 H 1.09001 * 109.47371 * 299.99869 * 29 27 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4307 1.4601 0.0151 5 1 3.8681 0.5023 0.2967 6 6 3.8470 2.5285 1.0281 7 6 3.4679 2.0797 2.4159 8 8 2.9192 1.0104 2.5787 9 7 3.7395 2.8661 3.4762 10 6 3.3714 2.4296 4.8253 11 6 4.2071 1.2468 5.2607 12 6 5.5201 1.8756 5.8128 13 6 5.2811 3.4116 5.8403 14 6 3.7799 3.4971 5.9087 15 1 3.4684 3.1049 6.8769 16 7 2.9449 4.6095 5.5897 17 6 3.2708 5.9371 5.6704 18 1 4.2905 6.2315 5.8699 19 6 2.2906 6.9043 5.4958 20 7 2.6144 8.0935 5.0340 21 14 0.5131 6.5207 5.9233 22 1 -0.1756 5.9704 4.7284 23 1 0.4727 5.5220 7.0216 24 1 -0.1706 7.7645 6.3598 25 6 1.6403 4.0272 5.1561 26 6 1.8646 2.4856 5.0267 27 6 3.9257 1.8570 -1.3772 28 6 3.6365 0.7238 -2.3636 29 6 3.2030 3.1263 -1.8327 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3634 0.5139 0.8899 33 1 1.8933 -0.5139 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 3.3392 3.4651 0.7977 36 1 4.9256 2.6776 0.9763 37 1 4.1786 3.7211 3.3460 38 1 3.6951 0.6874 6.0438 39 1 4.4217 0.5994 4.4106 40 1 5.7148 1.5130 6.8221 41 1 6.3572 1.6321 5.1586 42 1 5.6567 3.8708 4.9259 43 1 5.7382 3.8658 6.7194 44 1 3.5458 8.3173 4.8811 45 1 0.8725 4.2344 5.9015 46 1 1.3476 4.4429 4.1919 47 1 1.3370 2.0799 4.1634 48 1 1.5707 1.9716 5.9419 49 1 4.9991 2.0430 -1.3419 50 1 2.5593 0.5776 -2.4435 51 1 4.0418 0.9815 -3.3421 52 1 4.1024 -0.1952 -2.0079 53 1 3.4089 3.9338 -1.1299 54 1 3.5558 3.4095 -2.8244 55 1 2.1295 2.9405 -1.8680 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001571500566.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:02:29 Heat of formation + Delta-G solvation = -77.500598 kcal Electronic energy + Delta-G solvation = -32565.206761 eV Core-core repulsion = 28602.028397 eV Total energy + Delta-G solvation = -3963.178364 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.06278 -40.35078 -38.86294 -36.35456 -35.84948 -34.49915 -33.96754 -32.51767 -31.77403 -30.69063 -28.73237 -28.03052 -27.72457 -25.48952 -25.09909 -23.58075 -22.82218 -21.86793 -21.07198 -20.83713 -20.14874 -19.11794 -18.11946 -17.65893 -17.32175 -16.92715 -16.69276 -16.30102 -16.04609 -15.76377 -15.59281 -15.19310 -15.12386 -14.93926 -14.56273 -14.47881 -14.16018 -13.93327 -13.66415 -13.46032 -13.44587 -13.13315 -13.01085 -12.94137 -12.85592 -12.68608 -12.60713 -12.50721 -12.39315 -12.15666 -12.10730 -11.88521 -11.85036 -11.67397 -11.56212 -11.44291 -11.38188 -11.33162 -11.08170 -10.61653 -10.46560 -10.21581 -9.87600 -9.12610 -8.59820 -5.36564 1.39362 1.48004 1.64428 1.82610 2.32274 2.50727 2.85970 2.88699 3.09403 3.53300 3.73332 3.77806 3.80623 3.97533 4.01079 4.08716 4.17962 4.22444 4.25181 4.30206 4.38715 4.41236 4.46010 4.52131 4.53211 4.55285 4.60565 4.69479 4.71757 4.73892 4.84148 4.87224 4.89483 4.92474 4.94009 4.96206 5.04823 5.04951 5.07796 5.11786 5.13944 5.18626 5.24337 5.28837 5.32290 5.42724 5.45437 5.52243 5.67195 5.79838 6.11781 6.46377 6.72060 6.80728 7.41374 7.54893 8.21883 8.90258 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.011266 B = 0.003937 C = 0.003597 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2484.670293 B = 7109.608219 C = 7781.424074 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.062 3.938 3 O -0.389 6.389 4 C 0.116 3.884 5 H 0.064 0.936 6 C -0.147 4.147 7 C 0.515 3.485 8 O -0.563 6.563 9 N -0.701 5.701 10 C 0.143 3.857 11 C -0.102 4.102 12 C -0.101 4.101 13 C -0.110 4.110 14 C 0.141 3.859 15 H 0.023 0.977 16 N -0.604 5.604 17 C -0.308 4.308 18 H 0.058 0.942 19 C -0.067 4.067 20 N -0.953 5.953 21 Si 1.094 2.906 22 H -0.285 1.285 23 H -0.272 1.272 24 H -0.305 1.305 25 C 0.110 3.890 26 C -0.111 4.111 27 C -0.108 4.108 28 C -0.145 4.145 29 C -0.141 4.141 30 H 0.061 0.939 31 H 0.085 0.915 32 H 0.041 0.959 33 H 0.058 0.942 34 H 0.040 0.960 35 H 0.094 0.906 36 H 0.125 0.875 37 H 0.400 0.600 38 H 0.082 0.918 39 H 0.069 0.931 40 H 0.082 0.918 41 H 0.078 0.922 42 H 0.058 0.942 43 H 0.062 0.938 44 H 0.251 0.749 45 H 0.034 0.966 46 H 0.027 0.973 47 H 0.071 0.929 48 H 0.091 0.909 49 H 0.093 0.907 50 H 0.051 0.949 51 H 0.067 0.933 52 H 0.057 0.943 53 H 0.048 0.952 54 H 0.062 0.938 55 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.665 -19.072 -10.799 22.408 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.015 4.015 3 O -0.308 6.308 4 C 0.058 3.942 5 H 0.082 0.918 6 C -0.186 4.186 7 C 0.303 3.697 8 O -0.443 6.443 9 N -0.351 5.351 10 C 0.055 3.945 11 C -0.141 4.141 12 C -0.139 4.139 13 C -0.148 4.148 14 C 0.032 3.968 15 H 0.040 0.960 16 N -0.328 5.328 17 C -0.436 4.436 18 H 0.075 0.925 19 C -0.263 4.263 20 N -0.597 5.597 21 Si 0.923 3.077 22 H -0.212 1.212 23 H -0.199 1.199 24 H -0.234 1.234 25 C -0.014 4.014 26 C -0.150 4.150 27 C -0.127 4.127 28 C -0.202 4.202 29 C -0.198 4.198 30 H 0.080 0.920 31 H 0.104 0.896 32 H 0.061 0.939 33 H 0.076 0.924 34 H 0.058 0.942 35 H 0.112 0.888 36 H 0.143 0.857 37 H 0.235 0.765 38 H 0.100 0.900 39 H 0.088 0.912 40 H 0.100 0.900 41 H 0.096 0.904 42 H 0.077 0.923 43 H 0.080 0.920 44 H 0.061 0.939 45 H 0.051 0.949 46 H 0.045 0.955 47 H 0.089 0.911 48 H 0.110 0.890 49 H 0.111 0.889 50 H 0.070 0.930 51 H 0.086 0.914 52 H 0.076 0.924 53 H 0.067 0.933 54 H 0.081 0.919 55 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 2.654 -18.953 -10.668 21.911 hybrid contribution 1.686 0.518 0.290 1.787 sum 4.340 -18.436 -10.378 21.596 Atomic orbital electron populations 1.21705 0.93907 1.02768 1.01897 1.22537 0.95470 0.83633 0.99825 1.87863 1.20976 1.27109 1.94863 1.21807 0.81832 0.97219 0.93386 0.91782 1.22053 1.04473 1.01432 0.90692 1.20871 0.77828 0.84108 0.86878 1.90600 1.43289 1.23735 1.86655 1.45857 1.61208 1.22416 1.05641 1.21424 0.93473 0.96405 0.83194 1.21817 0.95661 0.95627 1.00981 1.22601 0.97083 0.92181 1.02078 1.21661 0.94122 0.97572 1.01446 1.21049 0.93482 0.87156 0.95076 0.95995 1.43930 1.10618 1.00966 1.77317 1.19852 0.94557 0.81489 1.47692 0.92460 1.26574 1.07210 0.93697 0.98795 1.71015 1.18994 1.25536 1.44141 0.83432 0.73206 0.73812 0.77234 1.21231 1.19861 1.23382 1.22576 0.88341 0.93548 0.96959 1.22409 0.96256 0.93761 1.02532 1.21571 1.00810 0.96518 0.93785 1.21840 1.01653 0.97583 0.99111 1.21732 1.00500 0.96613 1.01004 0.92027 0.89579 0.93943 0.92413 0.94157 0.88762 0.85713 0.76500 0.89984 0.91241 0.89957 0.90361 0.92335 0.91955 0.93895 0.94880 0.95464 0.91051 0.89037 0.88921 0.93037 0.91411 0.92386 0.93262 0.91856 0.93375 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.12 10.28 71.98 0.74 -2.38 16 2 C 0.06 1.45 5.83 71.98 0.42 1.87 16 3 O -0.39 -10.51 8.11 -135.21 -1.10 -11.61 16 4 C 0.12 2.62 1.48 30.60 0.05 2.66 16 5 H 0.06 1.47 7.47 -2.39 -0.02 1.45 16 6 C -0.15 -3.53 5.06 29.85 0.15 -3.37 16 7 C 0.52 15.64 7.02 87.66 0.62 16.26 16 8 O -0.56 -19.21 12.53 10.72 0.13 -19.07 16 9 N -0.70 -22.41 4.39 -419.68 -1.84 -24.25 16 10 C 0.14 4.67 0.41 4.32 0.00 4.67 16 11 C -0.10 -2.73 6.05 30.95 0.19 -2.54 16 12 C -0.10 -2.41 6.91 32.38 0.22 -2.18 16 13 C -0.11 -3.41 6.41 30.64 0.20 -3.21 16 14 C 0.14 5.28 2.62 46.47 0.12 5.40 16 15 H 0.02 0.86 7.98 -2.39 -0.02 0.84 16 16 N -0.60 -28.04 3.00 -668.39 -2.01 -30.05 16 17 C -0.31 -16.97 10.44 84.03 0.88 -16.09 16 18 H 0.06 3.36 8.06 -2.91 -0.02 3.33 16 19 C -0.07 -3.93 5.44 84.86 0.46 -3.47 16 20 N -0.95 -59.76 13.70 21.65 0.30 -59.47 16 21 Si 1.09 54.64 24.79 68.60 1.70 56.34 16 22 H -0.29 -13.71 6.86 99.48 0.68 -13.03 16 23 H -0.27 -12.68 6.32 99.48 0.63 -12.05 16 24 H -0.31 -15.48 7.11 99.48 0.71 -14.77 16 25 C 0.11 4.77 4.78 86.99 0.42 5.19 16 26 C -0.11 -3.94 6.22 31.46 0.20 -3.74 16 27 C -0.11 -1.91 2.75 -10.80 -0.03 -1.94 16 28 C -0.14 -2.22 8.29 71.98 0.60 -1.62 16 29 C -0.14 -2.75 8.76 71.98 0.63 -2.12 16 30 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 31 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 32 H 0.04 1.07 8.14 -2.39 -0.02 1.05 16 33 H 0.06 1.12 6.36 -2.39 -0.02 1.10 16 34 H 0.04 1.08 7.27 -2.39 -0.02 1.06 16 35 H 0.09 2.45 6.83 -2.38 -0.02 2.44 16 36 H 0.12 2.27 8.14 -2.39 -0.02 2.25 16 37 H 0.40 13.41 7.80 -92.71 -0.72 12.69 16 38 H 0.08 2.01 8.14 -2.38 -0.02 1.99 16 39 H 0.07 1.93 6.84 -2.39 -0.02 1.91 16 40 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 41 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 42 H 0.06 1.88 7.38 -2.39 -0.02 1.86 16 43 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 44 H 0.25 15.69 8.73 -92.71 -0.81 14.89 16 45 H 0.03 1.49 4.61 -2.39 -0.01 1.47 16 46 H 0.03 1.29 7.37 -2.39 -0.02 1.28 16 47 H 0.07 2.62 7.18 -2.39 -0.02 2.61 16 48 H 0.09 2.88 8.14 -2.39 -0.02 2.86 16 49 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 50 H 0.05 0.88 6.73 -2.38 -0.02 0.87 16 51 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 52 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 53 H 0.05 1.02 6.70 -2.38 -0.02 1.00 16 54 H 0.06 1.04 8.14 -2.38 -0.02 1.02 16 55 H 0.05 1.09 7.54 -2.39 -0.02 1.07 16 Total: -1.00 -67.75 406.27 3.03 -64.72 By element: Atomic # 1 Polarization: 30.01 SS G_CDS: -0.01 Total: 30.01 kcal Atomic # 6 Polarization: -12.48 SS G_CDS: 5.85 Total: -6.63 kcal Atomic # 7 Polarization: -110.21 SS G_CDS: -3.55 Total: -113.76 kcal Atomic # 8 Polarization: -29.72 SS G_CDS: -0.96 Total: -30.68 kcal Atomic # 14 Polarization: 54.64 SS G_CDS: 1.70 Total: 56.34 kcal Total: -67.75 3.03 -64.72 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001571500566.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.779 kcal (2) G-P(sol) polarization free energy of solvation -67.751 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.530 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.029 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.722 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.501 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds