Wall clock time and date at job start Tue Mar 31 2020 22:02:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42893 * 109.47418 * 2 1 4 4 C 1.42905 * 114.00196 * 175.57619 * 3 2 1 5 5 H 1.09001 * 109.47180 * 325.60036 * 4 3 2 6 6 C 1.52994 * 109.47096 * 205.59836 * 4 3 2 7 7 C 1.50698 * 109.47365 * 65.00000 * 6 4 3 8 8 O 1.21286 * 119.99827 * 359.97438 * 7 6 4 9 9 N 1.34773 * 120.00641 * 180.02562 * 7 6 4 10 10 C 1.46495 * 120.00561 * 180.02562 * 9 7 6 11 11 C 1.53589 * 112.24252 * 300.34839 * 10 9 7 12 12 C 1.54177 * 106.69957 * 237.97984 * 11 10 9 13 13 C 1.54755 * 104.36317 * 335.86897 * 12 11 10 14 14 C 1.54774 * 103.21750 * 37.32648 * 13 12 11 15 15 H 1.09000 * 111.86720 * 84.92410 * 14 13 12 16 16 N 1.46977 * 109.48871 * 209.44993 * 14 13 12 17 17 C 1.36939 * 125.57832 * 294.53998 * 16 14 13 18 18 H 1.07998 * 120.00197 * 359.97438 * 17 16 14 19 19 C 1.38811 * 119.99759 * 180.02562 * 17 16 14 20 20 N 1.31614 * 120.00152 * 359.97438 * 19 17 16 21 21 Si 1.86801 * 120.00069 * 179.97438 * 19 17 16 22 22 H 1.48505 * 109.46971 * 89.99327 * 21 19 17 23 23 H 1.48495 * 109.47384 * 209.99748 * 21 19 17 24 24 H 1.48503 * 109.46902 * 329.99977 * 21 19 17 25 25 C 1.47362 * 108.83796 * 114.50477 * 16 14 13 26 26 C 1.54909 * 112.33577 * 64.35252 * 10 9 7 27 27 C 1.53003 * 109.47151 * 85.59766 * 4 3 2 28 28 C 1.52998 * 109.46933 * 63.19877 * 27 4 3 29 29 C 1.52999 * 109.47119 * 183.19778 * 27 4 3 30 30 H 1.09001 * 109.47254 * 180.02562 * 1 2 3 31 31 H 1.09006 * 109.46882 * 300.00296 * 1 2 3 32 32 H 1.08996 * 109.47073 * 60.00270 * 1 2 3 33 33 H 1.09006 * 109.46882 * 239.99704 * 2 1 3 34 34 H 1.09003 * 109.47412 * 120.00329 * 2 1 3 35 35 H 1.09005 * 109.47199 * 184.99822 * 6 4 3 36 36 H 1.09006 * 109.47737 * 304.99992 * 6 4 3 37 37 H 0.97003 * 119.99654 * 359.97438 * 9 7 6 38 38 H 1.09002 * 110.01369 * 358.12703 * 11 10 9 39 39 H 1.08992 * 110.01736 * 119.51685 * 11 10 9 40 40 H 1.08995 * 110.80070 * 216.92258 * 12 11 10 41 41 H 1.09005 * 110.09609 * 94.45246 * 12 11 10 42 42 H 1.09002 * 110.67081 * 278.89504 * 13 12 11 43 43 H 1.09000 * 110.67008 * 155.75977 * 13 12 11 44 44 H 0.97006 * 120.00336 * 179.97438 * 20 19 17 45 45 H 1.09006 * 110.36968 * 94.14629 * 25 16 14 46 46 H 1.09002 * 110.36978 * 216.35874 * 25 16 14 47 47 H 1.09004 * 110.97371 * 204.33327 * 26 10 9 48 48 H 1.08998 * 110.97046 * 328.09791 * 26 10 9 49 49 H 1.08997 * 109.47032 * 303.20074 * 27 4 3 50 50 H 1.09000 * 109.47599 * 60.00244 * 28 27 4 51 51 H 1.09009 * 109.47284 * 179.97438 * 28 27 4 52 52 H 1.08995 * 109.47494 * 299.99807 * 28 27 4 53 53 H 1.09003 * 109.47108 * 53.96238 * 29 27 4 54 54 H 1.08992 * 109.46992 * 173.96487 * 29 27 4 55 55 H 1.09004 * 109.47214 * 293.96639 * 29 27 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4273 1.4613 0.1007 5 1 3.8123 0.6603 0.7318 6 6 3.7878 2.8143 0.7172 7 6 3.2818 2.8710 2.1355 8 8 2.6906 1.9226 2.6068 9 7 3.4854 3.9757 2.8801 10 6 2.9940 4.0306 4.2591 11 6 1.4707 3.8519 4.3410 12 6 0.9143 5.1079 5.0409 13 6 2.1059 5.6455 5.8691 14 6 3.3235 5.3792 4.9515 15 1 3.4707 6.1821 4.2292 16 7 4.5203 5.1601 5.7761 17 6 5.1150 6.0944 6.5813 18 1 4.7041 7.0910 6.6468 19 6 6.2468 5.7610 7.3125 20 7 6.7480 4.5466 7.2323 21 14 7.0587 7.0357 8.4104 22 1 6.4642 6.9690 9.7697 23 1 8.5158 6.7617 8.4934 24 1 6.8412 8.3899 7.8411 25 6 4.9748 3.7700 5.5950 26 6 3.6883 2.9905 5.1733 27 6 4.0476 1.3547 -1.2939 28 6 3.5690 2.5247 -2.1557 29 6 5.5726 1.3968 -1.1783 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 1.8933 -0.5139 -0.8900 34 1 1.8934 -0.5139 0.8900 35 1 4.8707 2.9387 0.7125 36 1 3.3279 3.6130 0.1352 37 1 3.9579 4.7344 2.5031 38 1 1.0525 3.7515 3.3395 39 1 1.2299 2.9713 4.9364 40 1 0.0809 4.8498 5.6942 41 1 0.6029 5.8432 4.2988 42 1 2.2025 5.0962 6.8056 43 1 1.9927 6.7131 6.0580 44 1 7.5391 4.3136 7.7430 45 1 5.7372 3.7183 4.8177 46 1 5.3628 3.3725 6.5329 47 1 3.0595 2.7408 6.0280 48 1 3.9553 2.0948 4.6125 49 1 3.7440 0.4152 -1.7557 50 1 3.8725 3.4643 -1.6939 51 1 4.0112 2.4491 -3.1492 52 1 2.4825 2.4948 -2.2381 53 1 5.9054 0.6296 -0.4791 54 1 6.0163 1.2138 -2.1568 55 1 5.8827 2.3772 -0.8164 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001571500568.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:02:38 Heat of formation + Delta-G solvation = -91.348441 kcal Electronic energy + Delta-G solvation = -31947.283626 eV Core-core repulsion = 27983.504775 eV Total energy + Delta-G solvation = -3963.778851 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.59488 -40.21141 -38.84105 -36.21766 -36.00515 -34.64997 -33.29673 -32.28271 -31.60818 -30.43118 -28.41947 -27.99883 -27.44730 -25.74476 -25.30424 -23.69113 -22.71977 -21.62940 -21.11638 -20.25897 -20.07726 -18.87361 -18.30741 -17.74972 -17.18690 -16.84843 -16.41286 -16.25151 -16.02732 -15.65149 -15.12659 -14.98998 -14.87650 -14.71540 -14.52952 -14.21874 -14.01863 -13.86446 -13.71375 -13.42279 -13.17354 -13.00005 -12.98261 -12.90277 -12.80225 -12.66402 -12.65381 -12.42254 -12.31588 -12.08701 -12.01687 -11.90439 -11.81166 -11.70466 -11.68792 -11.51491 -11.45298 -11.35599 -11.23323 -10.72002 -10.57475 -10.26083 -9.85028 -8.85531 -7.72491 -5.17461 1.48429 1.49740 1.58078 1.82564 2.27258 2.52131 2.81501 3.36565 3.39602 3.66239 3.71337 3.80674 3.97002 3.98552 4.05679 4.19431 4.23606 4.32325 4.36364 4.38584 4.42277 4.46764 4.48674 4.53458 4.58726 4.60103 4.66194 4.70670 4.81736 4.85179 4.92564 4.93254 4.95327 4.99379 5.06172 5.09262 5.10431 5.11677 5.18841 5.23300 5.24699 5.28255 5.32493 5.46461 5.49060 5.49759 5.51817 5.65356 5.76152 5.86584 6.32152 6.40446 6.71841 7.13243 7.43174 7.81597 8.45941 9.28517 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.015080 B = 0.003084 C = 0.002771 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1856.279088 B = 9077.031882 C =10103.111798 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.060 3.940 3 O -0.386 6.386 4 C 0.113 3.887 5 H 0.047 0.953 6 C -0.135 4.135 7 C 0.511 3.489 8 O -0.563 6.563 9 N -0.708 5.708 10 C 0.173 3.827 11 C -0.101 4.101 12 C -0.110 4.110 13 C -0.125 4.125 14 C 0.154 3.846 15 H 0.056 0.944 16 N -0.611 5.611 17 C -0.224 4.224 18 H 0.084 0.916 19 C -0.069 4.069 20 N -0.951 5.951 21 Si 0.976 3.024 22 H -0.289 1.289 23 H -0.298 1.298 24 H -0.268 1.268 25 C 0.164 3.836 26 C -0.128 4.128 27 C -0.112 4.112 28 C -0.141 4.141 29 C -0.150 4.150 30 H 0.085 0.915 31 H 0.045 0.955 32 H 0.065 0.935 33 H 0.057 0.943 34 H 0.033 0.967 35 H 0.122 0.878 36 H 0.119 0.881 37 H 0.407 0.593 38 H 0.064 0.936 39 H 0.056 0.944 40 H 0.076 0.924 41 H 0.079 0.921 42 H 0.048 0.952 43 H 0.066 0.934 44 H 0.244 0.756 45 H -0.012 1.012 46 H 0.069 0.931 47 H 0.062 0.938 48 H 0.058 0.942 49 H 0.073 0.927 50 H 0.062 0.938 51 H 0.063 0.937 52 H 0.051 0.949 53 H 0.050 0.950 54 H 0.070 0.930 55 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.463 -4.767 -19.207 21.935 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.017 4.017 3 O -0.306 6.306 4 C 0.055 3.945 5 H 0.065 0.935 6 C -0.175 4.175 7 C 0.299 3.701 8 O -0.441 6.441 9 N -0.359 5.359 10 C 0.085 3.915 11 C -0.140 4.140 12 C -0.148 4.148 13 C -0.165 4.165 14 C 0.048 3.952 15 H 0.073 0.927 16 N -0.335 5.335 17 C -0.353 4.353 18 H 0.102 0.898 19 C -0.261 4.261 20 N -0.601 5.601 21 Si 0.805 3.195 22 H -0.216 1.216 23 H -0.225 1.225 24 H -0.193 1.193 25 C 0.039 3.961 26 C -0.168 4.168 27 C -0.131 4.131 28 C -0.199 4.199 29 C -0.207 4.207 30 H 0.104 0.896 31 H 0.064 0.936 32 H 0.084 0.916 33 H 0.076 0.924 34 H 0.051 0.949 35 H 0.140 0.860 36 H 0.137 0.863 37 H 0.243 0.757 38 H 0.083 0.917 39 H 0.074 0.926 40 H 0.095 0.905 41 H 0.098 0.902 42 H 0.067 0.933 43 H 0.085 0.915 44 H 0.054 0.946 45 H 0.006 0.994 46 H 0.087 0.913 47 H 0.080 0.920 48 H 0.076 0.924 49 H 0.092 0.908 50 H 0.081 0.919 51 H 0.082 0.918 52 H 0.070 0.930 53 H 0.069 0.931 54 H 0.089 0.911 55 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -9.820 -5.249 -18.761 21.816 hybrid contribution 1.289 0.384 0.918 1.628 sum -8.531 -4.865 -17.843 20.367 Atomic orbital electron populations 1.21700 0.93267 1.02915 1.02258 1.22470 0.96020 0.83639 0.99531 1.87855 1.21227 1.26999 1.94477 1.21810 0.81531 0.95882 0.95271 0.93497 1.21958 1.03948 1.00254 0.91300 1.21060 0.78749 0.81728 0.88536 1.90657 1.42456 1.36975 1.74061 1.45898 1.59011 1.18543 1.12423 1.21388 0.93735 0.95166 0.81174 1.22128 0.92745 0.98483 1.00634 1.22286 0.97189 0.96540 0.98778 1.22781 0.94858 1.00620 0.98240 1.22025 0.87321 0.93844 0.92051 0.92674 1.44687 1.29459 1.09249 1.50113 1.19408 1.06313 0.92620 1.16950 0.89770 1.25579 0.99368 0.98740 1.02444 1.70061 1.24530 1.19504 1.46033 0.85097 0.76911 0.78731 0.78713 1.21639 1.22502 1.19281 1.21863 0.91410 0.83942 0.98884 1.23319 0.98057 0.97348 0.98057 1.21574 0.96237 1.00386 0.94901 1.21784 1.01172 0.97513 0.99386 1.21898 0.93872 1.02415 1.02561 0.89605 0.93596 0.91603 0.92449 0.94899 0.85978 0.86311 0.75730 0.91717 0.92561 0.90486 0.90205 0.93346 0.91500 0.94628 0.99424 0.91300 0.91968 0.92380 0.90847 0.91911 0.91833 0.92954 0.93082 0.91147 0.91696 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.72 10.28 71.98 0.74 -1.98 16 2 C 0.06 1.30 6.48 71.98 0.47 1.77 16 3 O -0.39 -9.68 8.69 -135.18 -1.18 -10.86 16 4 C 0.11 2.51 1.43 30.59 0.04 2.55 16 5 H 0.05 1.21 7.59 -2.39 -0.02 1.19 16 6 C -0.14 -2.91 4.65 29.85 0.14 -2.77 16 7 C 0.51 15.44 6.86 87.66 0.60 16.05 16 8 O -0.56 -20.78 13.30 10.75 0.14 -20.64 16 9 N -0.71 -21.73 5.23 -415.81 -2.18 -23.91 16 10 C 0.17 6.17 0.71 5.19 0.00 6.18 16 11 C -0.10 -3.25 5.25 31.19 0.16 -3.08 16 12 C -0.11 -3.09 6.83 31.59 0.22 -2.88 16 13 C -0.12 -4.40 6.26 31.80 0.20 -4.20 16 14 C 0.15 6.05 3.60 46.24 0.17 6.22 16 15 H 0.06 2.07 7.99 -2.39 -0.02 2.05 16 16 N -0.61 -30.38 3.07 -660.99 -2.03 -32.41 16 17 C -0.22 -12.11 10.03 84.03 0.84 -11.27 16 18 H 0.08 4.33 7.83 -2.91 -0.02 4.30 16 19 C -0.07 -3.87 5.49 84.86 0.47 -3.41 16 20 N -0.95 -56.76 10.07 21.65 0.22 -56.54 16 21 Si 0.98 45.30 29.55 68.60 2.03 47.32 16 22 H -0.29 -13.31 7.11 99.48 0.71 -12.60 16 23 H -0.30 -14.06 7.11 99.48 0.71 -13.35 16 24 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 25 C 0.16 8.33 5.96 87.33 0.52 8.86 16 26 C -0.13 -5.45 5.85 32.37 0.19 -5.26 16 27 C -0.11 -1.83 2.85 -10.79 -0.03 -1.86 16 28 C -0.14 -2.05 8.64 71.98 0.62 -1.43 16 29 C -0.15 -2.16 8.75 71.98 0.63 -1.53 16 30 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 31 H 0.04 1.03 8.14 -2.38 -0.02 1.01 16 32 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 33 H 0.06 1.02 7.58 -2.38 -0.02 1.00 16 34 H 0.03 0.82 7.99 -2.39 -0.02 0.80 16 35 H 0.12 2.21 6.41 -2.38 -0.02 2.19 16 36 H 0.12 2.14 6.67 -2.38 -0.02 2.12 16 37 H 0.41 10.86 8.50 -92.71 -0.79 10.08 16 38 H 0.06 2.06 7.40 -2.39 -0.02 2.04 16 39 H 0.06 1.93 7.41 -2.39 -0.02 1.91 16 40 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 41 H 0.08 1.94 8.14 -2.38 -0.02 1.92 16 42 H 0.05 1.94 8.11 -2.39 -0.02 1.92 16 43 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 44 H 0.24 14.26 8.31 -92.70 -0.77 13.49 16 45 H -0.01 -0.66 8.14 -2.38 -0.02 -0.68 16 46 H 0.07 4.04 5.82 -2.39 -0.01 4.02 16 47 H 0.06 2.68 7.65 -2.39 -0.02 2.66 16 48 H 0.06 2.51 6.82 -2.39 -0.02 2.50 16 49 H 0.07 1.17 7.56 -2.39 -0.02 1.15 16 50 H 0.06 0.84 6.48 -2.39 -0.02 0.83 16 51 H 0.06 0.77 8.14 -2.38 -0.02 0.75 16 52 H 0.05 0.87 7.77 -2.39 -0.02 0.85 16 53 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 54 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 55 H 0.06 0.88 6.71 -2.38 -0.02 0.87 16 Total: -1.00 -68.05 413.18 3.06 -64.99 By element: Atomic # 1 Polarization: 30.03 SS G_CDS: 0.07 Total: 30.10 kcal Atomic # 6 Polarization: -4.03 SS G_CDS: 5.98 Total: 1.95 kcal Atomic # 7 Polarization: -108.88 SS G_CDS: -3.98 Total: -112.86 kcal Atomic # 8 Polarization: -30.47 SS G_CDS: -1.03 Total: -31.50 kcal Atomic # 14 Polarization: 45.30 SS G_CDS: 2.03 Total: 47.32 kcal Total: -68.05 3.06 -64.99 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001571500568.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.360 kcal (2) G-P(sol) polarization free energy of solvation -68.047 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.407 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.058 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.989 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.348 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds