Wall clock time and date at job start Tue Mar 31 2020 22:24:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50695 * 119.99636 * 2 1 4 4 C 1.53005 * 109.46963 * 120.15647 * 3 2 1 5 5 C 1.50705 * 109.47026 * 293.83832 * 4 3 2 6 6 O 1.21278 * 119.99716 * 113.39952 * 5 4 3 7 7 N 1.34772 * 120.00310 * 293.40188 * 5 4 3 8 8 C 1.46507 * 119.99887 * 354.00738 * 7 5 4 9 9 C 1.46499 * 120.00205 * 174.01031 * 7 5 4 10 10 C 1.53000 * 109.46869 * 269.99500 * 9 7 5 11 11 H 1.08992 * 109.47381 * 304.99968 * 10 9 7 12 12 O 1.42904 * 109.46823 * 65.00306 * 10 9 7 13 13 C 1.52999 * 109.47080 * 184.99877 * 10 9 7 14 14 N 1.46497 * 109.47357 * 180.02562 * 13 10 9 15 15 C 1.46504 * 120.00309 * 89.99381 * 14 13 10 16 16 C 1.36938 * 119.99942 * 270.27650 * 14 13 10 17 17 H 1.08002 * 119.99422 * 27.81841 * 16 14 13 18 18 C 1.38805 * 120.00247 * 207.81867 * 16 14 13 19 19 N 1.31622 * 120.00064 * 8.80782 * 18 16 14 20 20 Si 1.86800 * 120.00301 * 188.80695 * 18 16 14 21 21 H 1.48498 * 109.47057 * 59.99828 * 20 18 16 22 22 H 1.48495 * 109.47185 * 180.02562 * 20 18 16 23 23 H 1.48507 * 109.46892 * 300.00280 * 20 18 16 24 24 C 1.52995 * 109.47202 * 53.84094 * 4 3 2 25 25 C 1.53005 * 109.47202 * 179.97438 * 24 4 3 26 26 C 1.53006 * 109.47015 * 300.00089 * 25 24 4 27 27 C 1.53001 * 109.46941 * 59.99786 * 26 25 24 28 28 C 1.52997 * 109.47302 * 299.99772 * 27 26 25 29 29 H 1.07999 * 120.00410 * 5.06993 * 1 2 3 30 30 H 1.08002 * 119.99668 * 185.05586 * 1 2 3 31 31 H 1.07997 * 120.00163 * 179.97438 * 2 1 3 32 32 H 1.08998 * 109.47572 * 0.15562 * 3 2 1 33 33 H 1.09003 * 109.47455 * 240.15363 * 3 2 1 34 34 H 1.09005 * 109.46734 * 269.87058 * 8 7 5 35 35 H 1.08998 * 109.46910 * 29.86835 * 8 7 5 36 36 H 1.08994 * 109.47181 * 149.87331 * 8 7 5 37 37 H 1.08998 * 109.47237 * 149.99432 * 9 7 5 38 38 H 1.08994 * 109.47022 * 29.99793 * 9 7 5 39 39 H 0.96698 * 114.00454 * 59.99301 * 12 10 9 40 40 H 1.08996 * 109.47325 * 59.99875 * 13 10 9 41 41 H 1.09009 * 109.47000 * 300.00134 * 13 10 9 42 42 H 1.09008 * 109.46352 * 86.13159 * 15 14 13 43 43 H 1.08996 * 109.47007 * 206.13185 * 15 14 13 44 44 H 1.08997 * 109.47288 * 326.14049 * 15 14 13 45 45 H 0.96998 * 119.99774 * 179.97438 * 19 18 16 46 46 H 1.08997 * 109.47391 * 300.00181 * 24 4 3 47 47 H 1.09000 * 109.47053 * 59.99847 * 24 4 3 48 48 H 1.08997 * 109.47008 * 180.02562 * 25 24 4 49 49 H 1.09002 * 109.46739 * 59.99910 * 25 24 4 50 50 H 1.09000 * 109.47012 * 300.00014 * 26 25 24 51 51 H 1.08996 * 109.46693 * 179.97438 * 26 25 24 52 52 H 1.09004 * 109.46583 * 180.02562 * 27 26 25 53 53 H 1.09000 * 109.47081 * 60.00270 * 27 26 25 54 54 H 1.09000 * 109.47459 * 300.00267 * 28 27 26 55 55 H 1.08997 * 109.46869 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 6 2.9460 1.3845 1.2473 5 6 2.0751 1.4554 2.4752 6 8 2.0692 0.5377 3.2682 7 7 1.3029 2.5384 2.6921 8 6 1.4068 3.7013 1.8070 9 6 0.3598 2.5530 3.8130 10 6 -0.9901 2.0006 3.3509 11 1 -1.3360 2.5642 2.4845 12 8 -0.8452 0.6238 2.9966 13 6 -2.0096 2.1310 4.4843 14 7 -3.3019 1.6015 4.0420 15 6 -3.6224 0.1865 4.2460 16 6 -4.2081 2.4278 3.4327 17 1 -3.8659 3.2899 2.8795 18 6 -5.5663 2.1574 3.5261 19 7 -5.9953 1.2143 4.3379 20 14 -6.7855 3.1319 2.4998 21 1 -6.4807 2.9442 1.0586 22 1 -8.1630 2.6539 2.7812 23 1 -6.6820 4.5728 2.8441 24 6 3.8346 0.1413 1.3233 25 6 4.7176 0.2210 2.5703 26 6 5.5957 1.4717 2.4943 27 6 4.7071 2.7148 2.4183 28 6 3.8241 2.6352 1.1713 29 1 -0.5401 0.9316 -0.0827 30 1 -0.5400 -0.9317 0.0824 31 1 1.8500 -0.9353 0.0004 32 1 1.3551 2.1336 0.0028 33 1 2.6881 1.3641 -0.8914 34 1 2.1587 4.3879 2.1960 35 1 1.6962 3.3732 0.8087 36 1 0.4429 4.2077 1.7579 37 1 0.2318 3.5760 4.1669 38 1 0.7477 1.9345 4.6223 39 1 -0.5396 0.0612 3.7213 40 1 -2.1201 3.1811 4.7546 41 1 -1.6636 1.5672 5.3507 42 1 -4.0449 0.0497 5.2415 43 1 -4.3465 -0.1336 3.4968 44 1 -2.7144 -0.4090 4.1516 45 1 -6.9445 1.0256 4.4035 46 1 3.2090 -0.7497 1.3769 47 1 4.4644 0.0901 0.4352 48 1 5.3509 -0.6645 2.6241 49 1 4.0880 0.2725 3.4586 50 1 6.2252 1.4202 1.6060 51 1 6.2244 1.5286 3.3829 52 1 5.3327 3.6058 2.3637 53 1 4.0776 2.7663 3.3066 54 1 4.4537 2.5837 0.2830 55 1 3.1908 3.5206 1.1175 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001571608645.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:24:47 Heat of formation + Delta-G solvation = -54.399519 kcal Electronic energy + Delta-G solvation = -32766.530889 eV Core-core repulsion = 28804.354264 eV Total energy + Delta-G solvation = -3962.176626 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.11907 -39.24674 -37.96348 -36.80660 -36.17207 -35.74592 -33.27025 -32.48806 -31.58996 -30.77740 -28.20739 -27.80754 -27.02016 -26.98071 -24.27185 -23.59160 -22.73103 -22.15547 -21.48229 -20.45425 -19.62947 -18.76416 -17.63130 -17.27238 -16.83402 -16.68348 -16.59647 -16.33511 -16.02674 -15.51649 -15.36779 -15.23867 -14.91018 -14.88554 -14.65602 -14.41993 -14.34945 -13.90589 -13.71708 -13.41467 -13.29994 -13.05071 -13.00028 -12.83405 -12.79134 -12.65270 -12.51398 -12.43586 -12.25705 -12.22911 -12.04186 -11.98799 -11.89947 -11.83242 -11.76817 -11.46776 -11.12443 -10.93128 -10.70938 -10.59204 -10.31450 -10.01367 -9.42722 -8.58130 -7.82507 -5.34270 1.44725 1.48039 1.49748 1.54194 1.87947 2.19527 2.50887 3.31764 3.48981 3.60189 3.67853 3.78988 3.85536 4.03278 4.11246 4.15794 4.20581 4.26922 4.30979 4.37657 4.43312 4.50242 4.54420 4.58597 4.62211 4.65616 4.67872 4.74890 4.76407 4.80945 4.89351 4.95034 4.99188 5.00386 5.03222 5.09429 5.15579 5.20187 5.29507 5.29625 5.34716 5.38737 5.42271 5.47324 5.59786 5.62335 5.66812 5.67793 5.82063 5.96339 6.36308 6.60637 6.97196 7.16613 7.44045 7.88024 8.35934 9.21375 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.018997 B = 0.003091 C = 0.003055 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1473.560901 B = 9056.191221 C = 9162.082411 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.163 4.163 3 C -0.082 4.082 4 C -0.062 4.062 5 C 0.536 3.464 6 O -0.571 6.571 7 N -0.609 5.609 8 C 0.052 3.948 9 C 0.093 3.907 10 C 0.092 3.908 11 H 0.073 0.927 12 O -0.550 6.550 13 C 0.123 3.877 14 N -0.607 5.607 15 C 0.188 3.812 16 C -0.262 4.262 17 H 0.068 0.932 18 C -0.054 4.054 19 N -0.941 5.941 20 Si 0.970 3.030 21 H -0.280 1.280 22 H -0.296 1.296 23 H -0.270 1.270 24 C -0.091 4.091 25 C -0.130 4.130 26 C -0.115 4.115 27 C -0.119 4.119 28 C -0.134 4.134 29 H 0.081 0.919 30 H 0.080 0.920 31 H 0.107 0.893 32 H 0.078 0.922 33 H 0.106 0.894 34 H 0.080 0.920 35 H 0.101 0.899 36 H 0.070 0.930 37 H 0.100 0.900 38 H 0.071 0.929 39 H 0.364 0.636 40 H 0.057 0.943 41 H 0.044 0.956 42 H -0.012 1.012 43 H 0.017 0.983 44 H 0.024 0.976 45 H 0.247 0.753 46 H 0.049 0.951 47 H 0.086 0.914 48 H 0.059 0.941 49 H 0.052 0.948 50 H 0.077 0.923 51 H 0.057 0.943 52 H 0.082 0.918 53 H 0.036 0.964 54 H 0.095 0.905 55 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.683 5.506 -8.921 27.740 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.181 4.181 3 C -0.119 4.119 4 C -0.065 4.065 5 C 0.326 3.674 6 O -0.450 6.450 7 N -0.341 5.341 8 C -0.089 4.089 9 C -0.031 4.031 10 C 0.029 3.971 11 H 0.091 0.909 12 O -0.354 6.354 13 C -0.004 4.004 14 N -0.330 5.330 15 C 0.043 3.957 16 C -0.392 4.392 17 H 0.086 0.914 18 C -0.249 4.249 19 N -0.588 5.588 20 Si 0.798 3.202 21 H -0.206 1.206 22 H -0.222 1.222 23 H -0.196 1.196 24 C -0.128 4.128 25 C -0.168 4.168 26 C -0.153 4.153 27 C -0.156 4.156 28 C -0.170 4.170 29 H 0.099 0.901 30 H 0.098 0.902 31 H 0.125 0.875 32 H 0.096 0.904 33 H 0.124 0.876 34 H 0.099 0.901 35 H 0.118 0.882 36 H 0.089 0.911 37 H 0.118 0.882 38 H 0.090 0.910 39 H 0.210 0.790 40 H 0.075 0.925 41 H 0.063 0.937 42 H 0.006 0.994 43 H 0.036 0.964 44 H 0.043 0.957 45 H 0.056 0.944 46 H 0.067 0.933 47 H 0.104 0.896 48 H 0.077 0.923 49 H 0.071 0.929 50 H 0.095 0.905 51 H 0.076 0.924 52 H 0.101 0.899 53 H 0.055 0.945 54 H 0.113 0.887 55 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 25.305 5.214 -9.035 27.371 hybrid contribution -1.389 -0.290 0.609 1.544 sum 23.916 4.924 -8.426 25.831 Atomic orbital electron populations 1.23562 0.96235 1.00807 0.99988 1.22871 0.95344 0.98991 1.00853 1.20964 0.98377 0.95403 0.97166 1.20769 0.94776 0.98929 0.92030 1.20728 0.79059 0.80695 0.86893 1.90574 1.67431 1.38521 1.48480 1.47698 1.39014 1.16943 1.30445 1.22635 1.03213 0.87790 0.95259 1.22063 0.88797 1.02875 0.89411 1.22784 0.93044 0.82910 0.98367 0.90935 1.86578 1.89728 1.18578 1.40529 1.21500 0.85969 0.98288 0.94641 1.43821 1.14369 1.05484 1.69293 1.20378 0.94815 0.83731 0.96758 1.19441 0.87128 1.07603 1.25023 0.91412 1.25924 0.99129 1.00082 0.99734 1.70215 1.13495 1.35324 1.39736 0.85309 0.77704 0.78718 0.78511 1.20570 1.22232 1.19563 1.21382 0.96944 0.95756 0.98741 1.21672 0.98028 0.98311 0.98753 1.21531 0.97519 0.94030 1.02180 1.21524 0.98135 0.98683 0.97291 1.22318 0.98486 0.96566 0.99674 0.90087 0.90188 0.87464 0.90396 0.87622 0.90147 0.88152 0.91103 0.88201 0.91008 0.79018 0.92494 0.93734 0.99374 0.96445 0.95750 0.94358 0.93265 0.89567 0.92269 0.92932 0.90471 0.92443 0.89901 0.94502 0.88678 0.87963 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.87 14.09 67.78 0.96 -3.91 16 2 C -0.16 -3.88 8.10 25.64 0.21 -3.68 16 3 C -0.08 -1.46 4.44 29.85 0.13 -1.33 16 4 C -0.06 -1.14 0.28 -52.92 -0.01 -1.16 16 5 C 0.54 13.66 3.87 87.66 0.34 14.00 16 6 O -0.57 -18.97 12.92 -2.64 -0.03 -19.00 16 7 N -0.61 -14.08 2.86 -846.76 -2.42 -16.50 16 8 C 0.05 0.81 8.31 127.77 1.06 1.88 16 9 C 0.09 2.45 5.14 86.38 0.44 2.90 16 10 C 0.09 3.12 3.48 30.59 0.11 3.23 16 11 H 0.07 2.72 8.14 -2.39 -0.02 2.71 16 12 O -0.55 -20.62 10.83 -148.60 -1.61 -22.23 16 13 C 0.12 4.92 5.38 86.38 0.46 5.39 16 14 N -0.61 -31.22 2.83 -726.93 -2.06 -33.28 16 15 C 0.19 9.95 8.77 127.77 1.12 11.07 16 16 C -0.26 -14.58 9.61 84.03 0.81 -13.77 16 17 H 0.07 3.61 7.84 -2.91 -0.02 3.58 16 18 C -0.05 -3.09 5.11 84.86 0.43 -2.65 16 19 N -0.94 -57.60 10.86 21.65 0.24 -57.36 16 20 Si 0.97 45.69 29.56 68.60 2.03 47.72 16 21 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 22 H -0.30 -14.10 7.11 99.48 0.71 -13.39 16 23 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 24 C -0.09 -1.76 3.96 30.59 0.12 -1.64 16 25 C -0.13 -2.66 5.63 30.60 0.17 -2.49 16 26 C -0.12 -1.75 5.92 30.60 0.18 -1.56 16 27 C -0.12 -1.70 5.70 30.59 0.17 -1.53 16 28 C -0.13 -1.65 4.26 30.60 0.13 -1.52 16 29 H 0.08 2.49 7.84 -2.91 -0.02 2.46 16 30 H 0.08 2.48 8.06 -2.91 -0.02 2.45 16 31 H 0.11 2.50 6.88 -2.91 -0.02 2.48 16 32 H 0.08 1.39 5.06 -2.39 -0.01 1.38 16 33 H 0.11 1.30 8.14 -2.39 -0.02 1.28 16 34 H 0.08 0.89 7.34 -2.38 -0.02 0.88 16 35 H 0.10 1.29 3.12 -2.39 -0.01 1.29 16 36 H 0.07 1.12 8.07 -2.39 -0.02 1.10 16 37 H 0.10 2.19 8.07 -2.39 -0.02 2.17 16 38 H 0.07 2.08 7.35 -2.39 -0.02 2.07 16 39 H 0.36 13.25 8.70 -74.06 -0.64 12.60 16 40 H 0.06 2.20 8.04 -2.39 -0.02 2.18 16 41 H 0.04 1.71 8.07 -2.38 -0.02 1.69 16 42 H -0.01 -0.68 7.77 -2.38 -0.02 -0.70 16 43 H 0.02 0.99 6.96 -2.39 -0.02 0.97 16 44 H 0.02 1.14 6.82 -2.39 -0.02 1.12 16 45 H 0.25 14.73 8.31 -92.71 -0.77 13.96 16 46 H 0.05 1.19 6.34 -2.39 -0.02 1.18 16 47 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 48 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 49 H 0.05 1.44 5.76 -2.39 -0.01 1.43 16 50 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 51 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 52 H 0.08 0.87 8.14 -2.38 -0.02 0.85 16 53 H 0.04 0.71 7.22 -2.39 -0.02 0.69 16 54 H 0.09 0.80 8.14 -2.39 -0.02 0.78 16 55 H 0.10 1.01 3.60 -2.39 -0.01 1.00 16 Total: -1.00 -71.81 405.61 3.20 -68.61 By element: Atomic # 1 Polarization: 28.59 SS G_CDS: 0.22 Total: 28.82 kcal Atomic # 6 Polarization: -3.61 SS G_CDS: 6.84 Total: 3.23 kcal Atomic # 7 Polarization: -102.90 SS G_CDS: -4.24 Total: -107.14 kcal Atomic # 8 Polarization: -39.59 SS G_CDS: -1.64 Total: -41.23 kcal Atomic # 14 Polarization: 45.69 SS G_CDS: 2.03 Total: 47.72 kcal Total: -71.81 3.20 -68.61 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001571608645.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.206 kcal (2) G-P(sol) polarization free energy of solvation -71.810 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.604 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.204 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.605 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.400 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds