Wall clock time and date at job start Tue Mar 31 2020 22:24:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31005 * 1 3 3 C 1.50694 * 120.00444 * 2 1 4 4 C 1.52997 * 109.47115 * 120.35713 * 3 2 1 5 5 C 1.50699 * 109.47265 * 293.89760 * 4 3 2 6 6 O 1.21290 * 119.99848 * 113.38125 * 5 4 3 7 7 N 1.34774 * 120.00107 * 293.37698 * 5 4 3 8 8 C 1.46501 * 119.99885 * 354.02710 * 7 5 4 9 9 C 1.46496 * 119.99963 * 174.02879 * 7 5 4 10 10 C 1.53003 * 109.47163 * 90.00096 * 9 7 5 11 11 H 1.08999 * 109.47039 * 59.99719 * 10 9 7 12 12 O 1.42896 * 109.47311 * 300.00036 * 10 9 7 13 13 C 1.53002 * 109.46973 * 179.97438 * 10 9 7 14 14 N 1.46498 * 109.46985 * 185.00119 * 13 10 9 15 15 C 1.46497 * 119.99889 * 270.00159 * 14 13 10 16 16 C 1.36941 * 120.00018 * 89.99807 * 14 13 10 17 17 H 1.07995 * 120.00202 * 329.93302 * 16 14 13 18 18 C 1.38812 * 119.99674 * 150.20276 * 16 14 13 19 19 N 1.31618 * 120.00304 * 0.68861 * 18 16 14 20 20 Si 1.86796 * 120.00046 * 180.68641 * 18 16 14 21 21 H 1.48505 * 109.46985 * 0.02562 * 20 18 16 22 22 H 1.48500 * 109.47062 * 119.99747 * 20 18 16 23 23 H 1.48497 * 109.47388 * 240.00442 * 20 18 16 24 24 C 1.53002 * 109.46942 * 53.89939 * 4 3 2 25 25 C 1.52999 * 109.47303 * 180.02562 * 24 4 3 26 26 C 1.52999 * 109.47012 * 300.00059 * 25 24 4 27 27 C 1.53000 * 109.47413 * 59.99578 * 26 25 24 28 28 C 1.52997 * 109.47015 * 300.00270 * 27 26 25 29 29 H 1.07995 * 119.99372 * 5.06152 * 1 2 3 30 30 H 1.07997 * 120.00514 * 185.06076 * 1 2 3 31 31 H 1.08002 * 119.99496 * 180.02562 * 2 1 3 32 32 H 1.09004 * 109.46862 * 0.35895 * 3 2 1 33 33 H 1.08993 * 109.47494 * 240.35927 * 3 2 1 34 34 H 1.08999 * 109.47544 * 269.57461 * 8 7 5 35 35 H 1.09005 * 109.47025 * 29.57901 * 8 7 5 36 36 H 1.09001 * 109.46845 * 149.57182 * 8 7 5 37 37 H 1.08999 * 109.47372 * 330.00019 * 9 7 5 38 38 H 1.08997 * 109.47165 * 209.99931 * 9 7 5 39 39 H 0.96707 * 113.99702 * 300.00385 * 12 10 9 40 40 H 1.08998 * 109.47122 * 65.00102 * 13 10 9 41 41 H 1.08997 * 109.47006 * 304.99932 * 13 10 9 42 42 H 1.09003 * 109.47213 * 272.87042 * 15 14 13 43 43 H 1.09001 * 109.47779 * 32.87197 * 15 14 13 44 44 H 1.09006 * 109.47540 * 152.87846 * 15 14 13 45 45 H 0.96999 * 120.00456 * 179.97438 * 19 18 16 46 46 H 1.09000 * 109.47210 * 299.99636 * 24 4 3 47 47 H 1.08999 * 109.47351 * 60.00153 * 24 4 3 48 48 H 1.08995 * 109.47275 * 179.97438 * 25 24 4 49 49 H 1.09001 * 109.47343 * 59.99648 * 25 24 4 50 50 H 1.08999 * 109.47081 * 299.99575 * 26 25 24 51 51 H 1.08999 * 109.47168 * 179.97438 * 26 25 24 52 52 H 1.09000 * 109.46850 * 180.02562 * 27 26 25 53 53 H 1.09001 * 109.46858 * 60.00463 * 27 26 25 54 54 H 1.08999 * 109.46973 * 299.99693 * 28 27 26 55 55 H 1.09004 * 109.46842 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 6 2.9500 1.3821 1.2447 5 6 2.0829 1.4495 2.4754 6 8 2.0798 0.5298 3.2662 7 7 1.3110 2.5317 2.6975 8 6 1.4114 3.6966 1.8148 9 6 0.3717 2.5432 3.8216 10 6 1.0688 3.1033 5.0631 11 1 1.4075 4.1196 4.8622 12 8 2.1922 2.2827 5.3896 13 6 0.0875 3.1159 6.2369 14 7 0.7162 3.7612 7.3921 15 6 1.4766 2.9602 8.3546 16 6 0.5932 5.1131 7.5722 17 1 0.4914 5.7647 6.7170 18 6 0.6049 5.6464 8.8537 19 7 0.7479 4.8542 9.8950 20 14 0.4178 7.4886 9.1005 21 1 0.2730 8.1527 7.7801 22 1 -0.7881 7.7577 9.9242 23 1 1.6192 8.0198 9.7931 24 6 3.8396 0.1393 1.3150 25 6 4.7255 0.2160 2.5600 26 6 5.6026 1.4675 2.4855 27 6 4.7130 2.7103 2.4152 28 6 3.8271 2.6335 1.1702 29 1 -0.5399 0.9317 -0.0825 30 1 -0.5401 -0.9316 0.0825 31 1 1.8500 -0.9354 -0.0004 32 1 1.3553 2.1335 0.0064 33 1 2.6854 1.3655 -0.8931 34 1 2.1605 4.3852 2.2056 35 1 1.7026 3.3716 0.8159 36 1 0.4457 4.1998 1.7660 37 1 0.0329 1.5269 4.0225 38 1 -0.4852 3.1692 3.5726 39 1 1.9646 1.3624 5.5807 40 1 -0.1831 2.0921 6.4953 41 1 -0.8088 3.6685 5.9553 42 1 0.8012 2.5682 9.1150 43 1 1.9602 2.1320 7.8365 44 1 2.2342 3.5843 8.8286 45 1 0.7564 5.2269 10.7905 46 1 3.2148 -0.7523 1.3686 47 1 4.4668 0.0905 0.4248 48 1 5.3590 -0.6696 2.6103 49 1 4.0981 0.2645 3.4500 50 1 6.2300 1.4190 1.5956 51 1 6.2334 1.5224 3.3727 52 1 5.3379 3.6018 2.3617 53 1 4.0855 2.7588 3.3052 54 1 4.4545 2.5850 0.2802 55 1 3.1930 3.5187 1.1203 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001571608646.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:24:51 Heat of formation + Delta-G solvation = -55.273856 kcal Electronic energy + Delta-G solvation = -32680.726914 eV Core-core repulsion = 28718.512374 eV Total energy + Delta-G solvation = -3962.214540 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.13006 -39.25693 -37.95496 -36.80871 -36.26957 -35.72287 -33.30358 -32.50666 -31.59827 -30.78880 -28.19788 -27.83389 -27.03258 -26.98898 -24.26276 -23.60518 -22.75798 -22.22053 -21.46748 -20.47357 -19.64096 -18.79466 -17.67920 -17.11831 -17.08234 -16.77782 -16.53983 -16.17120 -16.12807 -15.54009 -15.41048 -15.17472 -14.93182 -14.85105 -14.74005 -14.39335 -14.35408 -13.92661 -13.69584 -13.42282 -13.34603 -13.07176 -13.01410 -12.86413 -12.82662 -12.67286 -12.55271 -12.42723 -12.26531 -12.19872 -12.06696 -11.97090 -11.89262 -11.81247 -11.77459 -11.49862 -11.12247 -10.94816 -10.71557 -10.60100 -10.34802 -10.05934 -9.45819 -8.57111 -7.84209 -5.37785 1.41901 1.45176 1.45567 1.56488 1.88302 2.18107 2.49601 3.30950 3.49260 3.59414 3.64905 3.75908 3.83835 4.02761 4.10575 4.13658 4.21872 4.24912 4.29332 4.38252 4.41595 4.49911 4.54471 4.57254 4.59871 4.64767 4.68892 4.74275 4.75550 4.80185 4.88719 4.95066 4.97300 4.98896 5.01913 5.06549 5.11531 5.17616 5.27655 5.29581 5.37755 5.39323 5.43020 5.45959 5.60504 5.62645 5.68361 5.69722 5.78268 5.91098 6.36581 6.60315 6.95134 7.16191 7.44358 7.86132 8.35373 9.20064 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.016259 B = 0.003144 C = 0.003020 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1721.755854 B = 8903.905175 C = 9267.932899 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.161 4.161 3 C -0.086 4.086 4 C -0.063 4.063 5 C 0.533 3.467 6 O -0.567 6.567 7 N -0.608 5.608 8 C 0.053 3.947 9 C 0.095 3.905 10 C 0.088 3.912 11 H 0.070 0.930 12 O -0.559 6.559 13 C 0.124 3.876 14 N -0.612 5.612 15 C 0.189 3.811 16 C -0.263 4.263 17 H 0.070 0.930 18 C -0.053 4.053 19 N -0.941 5.941 20 Si 0.972 3.028 21 H -0.261 1.261 22 H -0.289 1.289 23 H -0.294 1.294 24 C -0.087 4.087 25 C -0.131 4.131 26 C -0.113 4.113 27 C -0.124 4.124 28 C -0.130 4.130 29 H 0.101 0.899 30 H 0.095 0.905 31 H 0.108 0.892 32 H 0.088 0.912 33 H 0.107 0.893 34 H 0.054 0.946 35 H 0.111 0.889 36 H 0.085 0.915 37 H 0.072 0.928 38 H 0.104 0.896 39 H 0.367 0.633 40 H 0.044 0.956 41 H 0.060 0.940 42 H -0.011 1.011 43 H 0.018 0.982 44 H 0.021 0.979 45 H 0.248 0.752 46 H 0.057 0.943 47 H 0.088 0.912 48 H 0.059 0.941 49 H 0.052 0.948 50 H 0.079 0.921 51 H 0.044 0.956 52 H 0.067 0.933 53 H 0.034 0.966 54 H 0.097 0.903 55 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.525 -6.488 -27.142 28.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.179 4.179 3 C -0.122 4.122 4 C -0.066 4.066 5 C 0.323 3.677 6 O -0.446 6.446 7 N -0.340 5.340 8 C -0.088 4.088 9 C -0.029 4.029 10 C 0.026 3.974 11 H 0.088 0.912 12 O -0.364 6.364 13 C -0.003 4.003 14 N -0.335 5.335 15 C 0.044 3.956 16 C -0.393 4.393 17 H 0.087 0.913 18 C -0.247 4.247 19 N -0.588 5.588 20 Si 0.800 3.200 21 H -0.185 1.185 22 H -0.216 1.216 23 H -0.221 1.221 24 C -0.125 4.125 25 C -0.168 4.168 26 C -0.151 4.151 27 C -0.161 4.161 28 C -0.167 4.167 29 H 0.119 0.881 30 H 0.113 0.887 31 H 0.126 0.874 32 H 0.106 0.894 33 H 0.125 0.875 34 H 0.072 0.928 35 H 0.129 0.871 36 H 0.103 0.897 37 H 0.090 0.910 38 H 0.122 0.878 39 H 0.214 0.786 40 H 0.062 0.938 41 H 0.079 0.921 42 H 0.007 0.993 43 H 0.036 0.964 44 H 0.040 0.960 45 H 0.057 0.943 46 H 0.076 0.924 47 H 0.107 0.893 48 H 0.077 0.923 49 H 0.070 0.930 50 H 0.097 0.903 51 H 0.062 0.938 52 H 0.086 0.914 53 H 0.053 0.947 54 H 0.115 0.885 55 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 3.834 -6.360 -26.657 27.672 hybrid contribution -0.406 0.259 1.443 1.521 sum 3.428 -6.100 -25.214 26.167 Atomic orbital electron populations 1.23934 0.96152 1.02220 1.01119 1.23034 0.96146 0.98926 0.99766 1.21017 0.98571 0.95972 0.96675 1.20779 0.94867 0.98468 0.92451 1.20784 0.78966 0.80922 0.87048 1.90569 1.65994 1.39407 1.48642 1.47691 1.40255 1.16681 1.29345 1.22635 1.03427 0.87688 0.95087 1.22081 0.92154 1.02394 0.86306 1.22849 0.87725 0.93621 0.93234 0.91169 1.86526 1.34209 1.23975 1.91706 1.21516 0.94594 0.96425 0.87797 1.43894 1.59188 1.04366 1.26062 1.20409 0.93114 0.92033 0.90084 1.19524 1.44236 0.83920 0.91653 0.91275 1.26042 1.00669 1.02413 0.95614 1.70245 1.55677 1.35008 0.97825 0.85133 0.76802 0.80021 0.78084 1.18543 1.21588 1.22096 1.21378 0.96925 0.95897 0.98287 1.21663 0.98153 0.97654 0.99347 1.21487 0.97551 0.94451 1.01578 1.21520 0.98354 0.98222 0.98045 1.22279 0.98482 0.96999 0.98934 0.88088 0.88667 0.87395 0.89401 0.87471 0.92755 0.87144 0.89663 0.91002 0.87834 0.78610 0.93774 0.92121 0.99304 0.96384 0.96031 0.94311 0.92418 0.89326 0.92268 0.92971 0.90258 0.93759 0.91384 0.94750 0.88455 0.88211 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -3.19 14.32 67.78 0.97 -2.22 16 2 C -0.16 -2.56 8.10 25.64 0.21 -2.36 16 3 C -0.09 -1.09 4.44 29.84 0.13 -0.96 16 4 C -0.06 -1.12 0.28 -52.93 -0.02 -1.13 16 5 C 0.53 13.53 3.91 87.66 0.34 13.88 16 6 O -0.57 -18.80 11.98 10.74 0.13 -18.68 16 7 N -0.61 -14.13 2.83 -846.75 -2.39 -16.53 16 8 C 0.05 0.84 8.35 127.77 1.07 1.90 16 9 C 0.09 2.53 5.18 86.38 0.45 2.98 16 10 C 0.09 3.13 3.48 30.60 0.11 3.24 16 11 H 0.07 2.78 8.14 -2.39 -0.02 2.76 16 12 O -0.56 -22.23 10.80 -135.18 -1.46 -23.69 16 13 C 0.12 5.07 5.34 86.38 0.46 5.53 16 14 N -0.61 -32.16 2.88 -726.94 -2.10 -34.25 16 15 C 0.19 10.25 8.81 127.77 1.13 11.38 16 16 C -0.26 -14.80 9.61 84.03 0.81 -13.99 16 17 H 0.07 3.72 7.83 -2.91 -0.02 3.70 16 18 C -0.05 -3.03 5.29 84.86 0.45 -2.58 16 19 N -0.94 -57.80 10.53 21.65 0.23 -57.57 16 20 Si 0.97 45.68 29.55 68.60 2.03 47.71 16 21 H -0.26 -11.42 7.11 99.48 0.71 -10.71 16 22 H -0.29 -13.49 7.11 99.48 0.71 -12.79 16 23 H -0.29 -13.90 7.11 99.48 0.71 -13.19 16 24 C -0.09 -1.67 3.96 30.59 0.12 -1.55 16 25 C -0.13 -3.13 5.63 30.59 0.17 -2.96 16 26 C -0.11 -2.43 5.92 30.59 0.18 -2.25 16 27 C -0.12 -2.74 5.70 30.59 0.17 -2.56 16 28 C -0.13 -2.00 4.26 30.59 0.13 -1.87 16 29 H 0.10 1.45 7.84 -2.91 -0.02 1.43 16 30 H 0.09 1.51 8.06 -2.91 -0.02 1.48 16 31 H 0.11 1.75 6.88 -2.91 -0.02 1.73 16 32 H 0.09 0.96 5.07 -2.39 -0.01 0.94 16 33 H 0.11 0.86 8.14 -2.39 -0.02 0.84 16 34 H 0.05 0.95 7.35 -2.39 -0.02 0.93 16 35 H 0.11 1.17 3.11 -2.38 -0.01 1.16 16 36 H 0.08 1.06 7.90 -2.39 -0.02 1.05 16 37 H 0.07 2.06 7.51 -2.39 -0.02 2.04 16 38 H 0.10 2.24 7.90 -2.39 -0.02 2.22 16 39 H 0.37 14.08 8.28 -74.05 -0.61 13.46 16 40 H 0.04 1.74 8.07 -2.39 -0.02 1.72 16 41 H 0.06 2.36 8.04 -2.39 -0.02 2.34 16 42 H -0.01 -0.66 7.74 -2.39 -0.02 -0.68 16 43 H 0.02 0.88 7.07 -2.39 -0.02 0.86 16 44 H 0.02 1.26 6.88 -2.38 -0.02 1.25 16 45 H 0.25 14.70 8.31 -92.71 -0.77 13.93 16 46 H 0.06 1.25 6.34 -2.39 -0.02 1.24 16 47 H 0.09 1.23 8.14 -2.39 -0.02 1.22 16 48 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 49 H 0.05 1.68 5.76 -2.39 -0.01 1.66 16 50 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 51 H 0.04 1.06 8.14 -2.39 -0.02 1.04 16 52 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 53 H 0.03 1.05 7.22 -2.39 -0.02 1.04 16 54 H 0.10 1.01 8.14 -2.39 -0.02 0.99 16 55 H 0.10 1.31 3.60 -2.38 -0.01 1.30 16 Total: -1.00 -73.20 404.36 3.57 -69.63 By element: Atomic # 1 Polarization: 28.65 SS G_CDS: 0.25 Total: 28.90 kcal Atomic # 6 Polarization: -2.40 SS G_CDS: 6.88 Total: 4.48 kcal Atomic # 7 Polarization: -104.09 SS G_CDS: -4.26 Total: -108.35 kcal Atomic # 8 Polarization: -41.03 SS G_CDS: -1.33 Total: -42.36 kcal Atomic # 14 Polarization: 45.68 SS G_CDS: 2.03 Total: 47.71 kcal Total: -73.20 3.57 -69.63 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001571608646.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.354 kcal (2) G-P(sol) polarization free energy of solvation -73.198 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.844 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.570 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.628 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.274 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds