Wall clock time and date at job start Tue Mar 31 2020 23:12:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46896 * 110.99841 * 2 1 4 4 C 1.50700 * 109.47273 * 293.95330 * 3 2 1 5 5 H 1.08001 * 120.00089 * 0.02562 * 4 3 2 6 6 C 1.37883 * 119.99909 * 179.97438 * 4 3 2 7 7 N 1.31513 * 119.99899 * 179.97438 * 6 4 3 8 8 Si 1.86794 * 119.99919 * 0.02562 * 6 4 3 9 9 H 1.48499 * 109.47198 * 89.99578 * 8 6 4 10 10 H 1.48503 * 109.47173 * 209.99251 * 8 6 4 11 11 H 1.48499 * 109.47343 * 329.99168 * 8 6 4 12 12 C 1.46898 * 110.99879 * 123.95553 * 2 1 3 13 13 C 1.53002 * 109.46687 * 164.20237 * 12 2 1 14 14 H 1.08996 * 109.47471 * 55.57863 * 13 12 2 15 15 O 1.42904 * 109.47328 * 295.57996 * 13 12 2 16 16 C 1.53000 * 109.47132 * 175.58026 * 13 12 2 17 17 N 1.46896 * 109.47410 * 184.99876 * 16 13 12 18 18 C 1.46899 * 111.00280 * 175.42119 * 17 16 13 19 19 H 1.08996 * 109.47026 * 14.83164 * 18 17 16 20 20 C 1.53004 * 109.46805 * 254.83391 * 18 17 16 21 21 N 1.46501 * 109.47209 * 65.50656 * 20 18 17 22 22 C 1.36883 * 126.39772 * 269.50335 * 21 20 18 23 23 C 1.34661 * 106.81974 * 179.84285 * 22 21 20 24 24 N 1.34126 * 108.01980 * 0.41439 * 23 22 21 25 25 C 1.30499 * 109.25488 * 359.73800 * 24 23 22 26 26 C 1.52999 * 109.47219 * 134.83648 * 18 17 16 27 27 C 1.53001 * 109.47367 * 57.66681 * 26 18 17 28 28 C 1.52999 * 109.46925 * 177.66577 * 26 18 17 29 29 C 1.53000 * 109.46843 * 297.66168 * 26 18 17 30 30 H 1.09000 * 109.46926 * 293.46968 * 1 2 3 31 31 H 1.08999 * 109.47353 * 53.46009 * 1 2 3 32 32 H 1.08997 * 109.47232 * 173.47080 * 1 2 3 33 33 H 1.08992 * 109.47548 * 53.96048 * 3 2 1 34 34 H 1.09007 * 109.46913 * 173.95733 * 3 2 1 35 35 H 0.96999 * 120.00462 * 180.02562 * 7 6 4 36 36 H 1.08998 * 109.47403 * 44.20835 * 12 2 1 37 37 H 1.08997 * 109.47100 * 284.19924 * 12 2 1 38 38 H 0.96703 * 113.99498 * 300.00213 * 15 13 12 39 39 H 1.08998 * 109.46928 * 305.00286 * 16 13 12 40 40 H 1.09000 * 109.47146 * 65.00001 * 16 13 12 41 41 H 1.00907 * 111.00240 * 299.37640 * 17 16 13 42 42 H 1.08998 * 109.46896 * 185.50178 * 20 18 17 43 43 H 1.09001 * 109.47106 * 305.50290 * 20 18 17 44 44 H 1.08002 * 126.58583 * 359.97438 * 22 21 20 45 45 H 1.08000 * 125.98952 * 180.12155 * 23 22 21 46 46 H 1.08008 * 125.64539 * 180.02562 * 25 24 23 47 47 H 1.08993 * 109.47615 * 59.99609 * 27 26 18 48 48 H 1.08994 * 109.47025 * 180.02562 * 27 26 18 49 49 H 1.09003 * 109.46476 * 299.99930 * 27 26 18 50 50 H 1.09000 * 109.47671 * 59.99834 * 28 26 18 51 51 H 1.09000 * 109.47293 * 180.02562 * 28 26 18 52 52 H 1.09000 * 109.47365 * 299.99492 * 28 26 18 53 53 H 1.09000 * 109.47491 * 65.86091 * 29 26 18 54 54 H 1.09005 * 109.46659 * 185.85612 * 29 26 18 55 55 H 1.08999 * 109.47621 * 305.85720 * 29 26 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6369 2.0471 -1.2984 5 1 1.0739 1.5115 -2.0485 6 6 2.0268 3.3495 -1.5284 7 7 1.7143 3.9391 -2.6617 8 14 2.9999 4.2761 -0.2308 9 1 4.4523 4.0636 -0.4557 10 1 2.6918 5.7260 -0.3225 11 1 2.6292 3.7756 1.1172 12 6 1.9954 -0.7660 1.1376 13 6 3.4740 -1.0798 0.9005 14 1 4.0183 -0.1524 0.7222 15 8 3.6032 -1.9341 -0.2378 16 6 4.0505 -1.7808 2.1322 17 7 5.4956 -1.9748 1.9538 18 6 6.1032 -2.5475 3.1624 19 1 5.3204 -2.9396 3.8117 20 6 6.8845 -1.4611 3.9043 21 7 5.9552 -0.4410 4.3964 22 6 5.5631 0.6892 3.7312 23 6 4.7052 1.3396 4.5401 24 7 4.5840 0.6307 5.6722 25 6 5.3299 -0.4372 5.5932 26 6 7.0535 -3.6799 2.7681 27 6 8.1184 -3.1418 1.8103 28 6 7.7301 -4.2377 4.0218 29 6 6.2621 -4.7926 2.0778 30 1 -0.3633 0.4093 0.9427 31 1 -0.3634 0.6118 -0.8256 32 1 -0.3633 -1.0210 -0.1169 33 1 1.5612 1.9273 0.8309 34 1 3.0798 1.3444 0.1082 35 1 1.9889 4.8552 -2.8238 36 1 1.4380 -1.6973 1.2377 37 1 1.8903 -0.1796 2.0503 38 1 3.1426 -2.7798 -0.1491 39 1 3.8725 -1.1677 3.0157 40 1 3.5668 -2.7494 2.2587 41 1 5.6865 -2.5490 1.1463 42 1 7.4149 -1.9059 4.7463 43 1 7.6021 -1.0014 3.2247 44 1 5.8793 0.9986 2.7459 45 1 4.2063 2.2714 4.3183 46 1 5.4301 -1.1930 6.3583 47 1 8.6822 -2.3491 2.3020 48 1 8.7951 -3.9486 1.5291 49 1 7.6362 -2.7444 0.9172 50 1 6.9715 -4.6211 4.7042 51 1 8.4075 -5.0441 3.7409 52 1 8.2939 -3.4450 4.5136 53 1 5.8661 -4.4237 1.1317 54 1 6.9183 -5.6425 1.8903 55 1 5.4381 -5.1044 2.7196 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001646514826.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:12:48 Heat of formation + Delta-G solvation = -6.093458 kcal Electronic energy + Delta-G solvation = -31817.417701 eV Core-core repulsion = 27889.628535 eV Total energy + Delta-G solvation = -3927.789167 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.242 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.93074 -40.25916 -39.22405 -37.19966 -35.07347 -34.59664 -34.36612 -31.22546 -30.40810 -29.94677 -29.33110 -28.20210 -27.90773 -26.55039 -25.06197 -23.87631 -22.79038 -22.15477 -21.71893 -21.60004 -19.66179 -19.06870 -18.39816 -17.45233 -17.32927 -16.66321 -16.35322 -16.28350 -16.04562 -15.85134 -15.55595 -15.25806 -14.94673 -14.83721 -14.60438 -14.52418 -14.48015 -14.34718 -14.08675 -13.90282 -13.75834 -13.38732 -13.17328 -13.07749 -12.93523 -12.79587 -12.68951 -12.64870 -12.41157 -12.27786 -12.23646 -11.87797 -11.79359 -11.70204 -11.62516 -11.52836 -11.43065 -10.87507 -10.79619 -10.76853 -10.44730 -9.42998 -9.29667 -8.99869 -8.28498 -6.30978 1.24223 1.33607 1.34760 1.45553 2.01353 2.27504 2.33821 2.85345 3.04882 3.32483 3.63747 3.66246 3.74224 3.90177 3.90741 3.95557 4.03261 4.10812 4.20104 4.25214 4.30586 4.37182 4.43557 4.50441 4.51116 4.57892 4.64156 4.66890 4.71168 4.76165 4.81679 4.84208 4.89404 4.89865 4.92812 4.99953 5.07030 5.07861 5.16365 5.17743 5.19828 5.34117 5.40236 5.44228 5.51479 5.54964 5.83915 5.95535 6.03997 6.34749 6.39411 6.49063 6.63699 6.74630 6.99974 7.20725 7.32213 8.88229 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.011181 B = 0.003620 C = 0.003197 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2503.639708 B = 7732.863755 C = 8756.099101 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 N -0.537 5.537 3 C 0.177 3.823 4 C -0.514 4.514 5 H 0.037 0.963 6 C 0.009 3.991 7 N -0.948 5.948 8 Si 0.942 3.058 9 H -0.263 1.263 10 H -0.281 1.281 11 H -0.253 1.253 12 C 0.027 3.973 13 C 0.128 3.872 14 H 0.073 0.927 15 O -0.558 6.558 16 C 0.052 3.948 17 N -0.682 5.682 18 C 0.088 3.912 19 H 0.059 0.941 20 C 0.108 3.892 21 N -0.441 5.441 22 C -0.025 4.025 23 C -0.071 4.071 24 N -0.535 5.535 25 C 0.174 3.826 26 C -0.066 4.066 27 C -0.143 4.143 28 C -0.144 4.144 29 C -0.146 4.146 30 H 0.017 0.983 31 H 0.048 0.952 32 H 0.080 0.920 33 H -0.020 1.020 34 H 0.026 0.974 35 H 0.267 0.733 36 H 0.091 0.909 37 H 0.027 0.973 38 H 0.378 0.622 39 H 0.065 0.935 40 H 0.044 0.956 41 H 0.353 0.647 42 H 0.123 0.877 43 H 0.097 0.903 44 H 0.170 0.830 45 H 0.154 0.846 46 H 0.233 0.767 47 H 0.061 0.939 48 H 0.062 0.938 49 H 0.050 0.950 50 H 0.061 0.939 51 H 0.065 0.935 52 H 0.068 0.932 53 H 0.050 0.950 54 H 0.069 0.931 55 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.960 -21.414 18.094 31.776 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 N -0.261 5.261 3 C 0.050 3.950 4 C -0.552 4.552 5 H 0.056 0.944 6 C -0.188 4.188 7 N -0.588 5.588 8 Si 0.765 3.235 9 H -0.188 1.188 10 H -0.207 1.207 11 H -0.177 1.177 12 C -0.102 4.102 13 C 0.068 3.932 14 H 0.091 0.909 15 O -0.363 6.363 16 C -0.078 4.078 17 N -0.316 5.316 18 C -0.023 4.023 19 H 0.077 0.923 20 C -0.014 4.014 21 N -0.122 5.122 22 C -0.160 4.160 23 C -0.217 4.217 24 N -0.254 5.254 25 C -0.109 4.109 26 C -0.067 4.067 27 C -0.201 4.201 28 C -0.201 4.201 29 C -0.203 4.203 30 H 0.035 0.965 31 H 0.067 0.933 32 H 0.098 0.902 33 H -0.002 1.002 34 H 0.043 0.957 35 H 0.076 0.924 36 H 0.109 0.891 37 H 0.045 0.955 38 H 0.225 0.775 39 H 0.084 0.916 40 H 0.062 0.938 41 H 0.175 0.825 42 H 0.140 0.860 43 H 0.115 0.885 44 H 0.187 0.813 45 H 0.171 0.829 46 H 0.249 0.751 47 H 0.080 0.920 48 H 0.081 0.919 49 H 0.069 0.931 50 H 0.080 0.920 51 H 0.084 0.916 52 H 0.087 0.913 53 H 0.069 0.931 54 H 0.088 0.912 55 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 15.246 -20.237 18.110 31.144 hybrid contribution -0.599 0.062 0.007 0.602 sum 14.647 -20.175 18.116 30.818 Atomic orbital electron populations 1.22218 0.87527 1.01584 0.99545 1.61785 1.07846 1.14613 1.41862 1.19885 0.94939 0.85850 0.94305 1.21255 1.34739 0.97418 1.01773 0.94437 1.25806 0.96983 0.98403 0.97589 1.70043 1.48703 1.13902 1.26200 0.85790 0.79696 0.77732 0.80260 1.18770 1.20656 1.17668 1.22801 0.97202 0.98679 0.91475 1.21699 0.93065 0.93292 0.85190 0.90867 1.86663 1.76451 1.31977 1.41219 1.22440 0.88888 0.99004 0.97508 1.60348 1.10599 1.54845 1.05807 1.21930 0.96223 0.92416 0.91701 0.92274 1.22474 0.90694 0.87806 1.00401 1.45534 1.34811 1.18037 1.13822 1.22669 1.03092 0.90114 1.00107 1.22312 1.04168 1.02715 0.92531 1.70202 1.23584 1.06668 1.24987 1.25493 0.95826 0.99592 0.89968 1.20751 0.95183 0.93718 0.97095 1.21908 0.98041 1.01162 0.98941 1.21961 1.00683 1.01540 0.95939 1.21919 1.00123 0.98209 1.00047 0.96484 0.93323 0.90150 1.00249 0.95652 0.92449 0.89109 0.95491 0.77481 0.91643 0.93788 0.82454 0.85964 0.88450 0.81271 0.82876 0.75126 0.91970 0.91862 0.93082 0.92031 0.91603 0.91289 0.93107 0.91243 0.92676 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.54 9.37 127.69 1.20 2.74 16 2 N -0.54 -22.71 4.65 -927.07 -4.31 -27.02 16 3 C 0.18 8.88 3.64 85.56 0.31 9.19 16 4 C -0.51 -30.87 8.98 25.60 0.23 -30.64 16 5 H 0.04 2.51 7.39 -2.91 -0.02 2.49 16 6 C 0.01 0.57 5.47 84.66 0.46 1.03 16 7 N -0.95 -60.88 13.96 21.45 0.30 -60.58 16 8 Si 0.94 45.78 27.47 68.60 1.88 47.67 16 9 H -0.26 -12.21 7.11 99.48 0.71 -11.50 16 10 H -0.28 -13.32 7.11 99.48 0.71 -12.62 16 11 H -0.25 -11.64 6.54 99.48 0.65 -10.99 16 12 C 0.03 0.88 4.62 86.30 0.40 1.28 16 13 C 0.13 3.73 3.26 30.60 0.10 3.83 16 14 H 0.07 2.70 6.46 -2.39 -0.02 2.68 16 15 O -0.56 -16.34 12.88 -148.98 -1.92 -18.26 16 16 C 0.05 1.10 4.82 86.30 0.42 1.52 16 17 N -0.68 -11.93 5.66 -491.58 -2.78 -14.72 16 18 C 0.09 1.04 1.67 44.92 0.07 1.12 16 19 H 0.06 0.76 7.61 -2.39 -0.02 0.75 16 20 C 0.11 1.27 5.08 86.38 0.44 1.71 16 21 N -0.44 -8.20 2.27 -529.06 -1.20 -9.40 16 22 C -0.02 -0.63 10.07 83.08 0.84 0.21 16 23 C -0.07 -2.08 11.87 83.52 0.99 -1.08 16 24 N -0.54 -15.33 11.25 -200.32 -2.25 -17.59 16 25 C 0.17 3.49 12.56 180.26 2.26 5.76 16 26 C -0.07 -0.56 0.54 -52.18 -0.03 -0.58 16 27 C -0.14 -1.42 7.96 71.98 0.57 -0.85 16 28 C -0.14 -0.75 8.07 71.98 0.58 -0.17 16 29 C -0.15 -1.35 8.22 71.98 0.59 -0.76 16 30 H 0.02 0.62 8.14 -2.39 -0.02 0.60 16 31 H 0.05 2.20 6.70 -2.39 -0.02 2.19 16 32 H 0.08 2.55 8.13 -2.39 -0.02 2.53 16 33 H -0.02 -1.02 7.18 -2.39 -0.02 -1.04 16 34 H 0.03 1.27 5.76 -2.38 -0.01 1.26 16 35 H 0.27 15.94 8.31 -92.71 -0.77 15.17 16 36 H 0.09 2.38 7.99 -2.39 -0.02 2.36 16 37 H 0.03 0.91 8.05 -2.39 -0.02 0.89 16 38 H 0.38 7.79 9.05 -74.05 -0.67 7.12 16 39 H 0.07 1.62 6.55 -2.39 -0.02 1.61 16 40 H 0.04 0.79 8.14 -2.39 -0.02 0.77 16 41 H 0.35 6.27 5.02 -89.69 -0.45 5.82 16 42 H 0.12 0.75 6.09 -2.39 -0.01 0.74 16 43 H 0.10 1.23 6.78 -2.39 -0.02 1.22 16 44 H 0.17 4.27 8.06 -2.91 -0.02 4.25 16 45 H 0.15 4.61 8.06 -2.91 -0.02 4.59 16 46 H 0.23 2.62 8.06 -2.91 -0.02 2.60 16 47 H 0.06 0.57 6.61 -2.39 -0.02 0.55 16 48 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 49 H 0.05 0.69 6.80 -2.39 -0.02 0.68 16 50 H 0.06 0.30 8.14 -2.39 -0.02 0.28 16 51 H 0.06 0.32 8.14 -2.39 -0.02 0.30 16 52 H 0.07 0.24 6.26 -2.39 -0.01 0.23 16 53 H 0.05 0.58 6.70 -2.39 -0.02 0.56 16 54 H 0.07 0.56 8.14 -2.38 -0.02 0.54 16 55 H 0.05 0.51 8.14 -2.39 -0.02 0.49 16 Total: -1.00 -76.82 419.70 -1.15 -77.97 By element: Atomic # 1 Polarization: 27.95 SS G_CDS: -0.30 Total: 27.65 kcal Atomic # 6 Polarization: -15.15 SS G_CDS: 9.44 Total: -5.71 kcal Atomic # 7 Polarization: -119.06 SS G_CDS: -10.25 Total: -129.31 kcal Atomic # 8 Polarization: -16.34 SS G_CDS: -1.92 Total: -18.26 kcal Atomic # 14 Polarization: 45.78 SS G_CDS: 1.88 Total: 47.67 kcal Total: -76.82 -1.15 -77.97 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001646514826.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.876 kcal (2) G-P(sol) polarization free energy of solvation -76.824 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.948 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.970 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.093 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds