Wall clock time and date at job start Tue Mar 31 2020 23:12:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46892 * 1 3 3 C 1.46902 * 110.99955 * 2 1 4 4 C 1.50702 * 109.46984 * 66.04882 * 3 2 1 5 5 H 1.08001 * 119.99967 * 359.97438 * 4 3 2 6 6 C 1.37881 * 119.99986 * 180.02562 * 4 3 2 7 7 N 1.31517 * 119.99841 * 359.97438 * 6 4 3 8 8 Si 1.86793 * 119.99910 * 179.97438 * 6 4 3 9 9 H 1.48498 * 109.47264 * 60.00252 * 8 6 4 10 10 H 1.48507 * 109.46899 * 180.02562 * 8 6 4 11 11 H 1.48500 * 109.47382 * 299.99823 * 8 6 4 12 12 C 1.46900 * 111.00122 * 236.05017 * 2 1 3 13 13 C 1.53004 * 109.47388 * 199.13040 * 12 2 1 14 14 H 1.08995 * 109.46668 * 303.28540 * 13 12 2 15 15 O 1.42900 * 109.47226 * 63.28454 * 13 12 2 16 16 C 1.52995 * 109.47082 * 183.28446 * 13 12 2 17 17 N 1.46904 * 109.46899 * 179.97438 * 16 13 12 18 18 C 1.46906 * 110.99666 * 175.64373 * 17 16 13 19 19 H 1.08997 * 109.47148 * 352.56326 * 18 17 16 20 20 C 1.53001 * 109.46778 * 232.55807 * 18 17 16 21 21 N 1.46501 * 109.47115 * 65.00454 * 20 18 17 22 22 C 1.36877 * 126.39412 * 269.70949 * 21 20 18 23 23 C 1.34676 * 106.81698 * 179.84242 * 22 21 20 24 24 N 1.34131 * 108.01396 * 0.42274 * 23 22 21 25 25 C 1.30493 * 109.25894 * 359.73123 * 24 23 22 26 26 C 1.53001 * 109.46767 * 112.55947 * 18 17 16 27 27 C 1.53003 * 109.47265 * 63.27468 * 26 18 17 28 28 C 1.52996 * 109.46776 * 183.27434 * 26 18 17 29 29 C 1.52998 * 109.47158 * 303.27660 * 26 18 17 30 30 H 1.09000 * 109.47330 * 187.30339 * 1 2 3 31 31 H 1.09006 * 109.46994 * 307.29353 * 1 2 3 32 32 H 1.08996 * 109.47625 * 67.29719 * 1 2 3 33 33 H 1.09004 * 109.47015 * 186.04729 * 3 2 1 34 34 H 1.08995 * 109.47111 * 306.05037 * 3 2 1 35 35 H 0.97000 * 120.00089 * 180.02562 * 7 6 4 36 36 H 1.09001 * 109.46780 * 319.12991 * 12 2 1 37 37 H 1.08992 * 109.47551 * 79.12481 * 12 2 1 38 38 H 0.96702 * 113.99895 * 60.00091 * 15 13 12 39 39 H 1.08994 * 109.47835 * 299.99989 * 16 13 12 40 40 H 1.09007 * 109.47212 * 60.00073 * 16 13 12 41 41 H 1.00900 * 110.99924 * 299.59963 * 17 16 13 42 42 H 1.08997 * 109.46578 * 185.00309 * 20 18 17 43 43 H 1.09001 * 109.47180 * 305.00132 * 20 18 17 44 44 H 1.08005 * 126.59364 * 359.97438 * 22 21 20 45 45 H 1.07997 * 125.99302 * 180.11557 * 23 22 21 46 46 H 1.08005 * 125.64621 * 180.02562 * 25 24 23 47 47 H 1.09005 * 109.47009 * 59.99837 * 27 26 18 48 48 H 1.08991 * 109.47349 * 179.97438 * 27 26 18 49 49 H 1.08997 * 109.47361 * 300.00426 * 27 26 18 50 50 H 1.08997 * 109.47474 * 60.00483 * 28 26 18 51 51 H 1.09004 * 109.47077 * 180.02562 * 28 26 18 52 52 H 1.09000 * 109.47697 * 299.99955 * 28 26 18 53 53 H 1.08991 * 109.47468 * 64.48628 * 29 26 18 54 54 H 1.09002 * 109.46720 * 184.48624 * 29 26 18 55 55 H 1.08997 * 109.47087 * 304.48097 * 29 26 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6369 2.0471 1.2985 5 1 1.0739 1.5114 2.0485 6 6 2.0267 3.3495 1.5286 7 7 2.7118 4.0019 0.6150 8 14 1.5817 4.1872 3.1377 9 1 2.1735 3.4303 4.2700 10 1 2.1130 5.5740 3.1373 11 1 0.1045 4.2236 3.2850 12 6 1.9954 -0.7659 -1.1376 13 6 3.4505 -1.1512 -0.8635 14 1 4.0341 -0.2514 -0.6690 15 8 3.5088 -2.0123 0.2755 16 6 4.0239 -1.8776 -2.0818 17 7 5.4212 -2.2470 -1.8188 18 6 5.9742 -3.0375 -2.9266 19 1 5.1793 -3.2809 -3.6316 20 6 6.5821 -4.3297 -2.3773 21 7 5.5229 -5.1605 -1.7993 22 6 5.0910 -5.1384 -0.5007 23 6 4.1076 -6.0532 -0.4015 24 7 3.9500 -6.6249 -1.6046 25 6 4.7944 -6.0952 -2.4468 26 6 7.0581 -2.2270 -3.6402 27 6 8.2118 -1.9552 -2.6727 28 6 7.5768 -3.0172 -4.8432 29 6 6.4696 -0.8981 -4.1181 30 1 -0.3634 -1.0193 0.1306 31 1 -0.3633 0.6227 0.8176 32 1 -0.3634 0.3966 -0.9480 33 1 3.0797 1.3444 -0.1083 34 1 1.5610 1.9274 -0.8308 35 1 2.9864 4.9180 0.7770 36 1 1.4001 -1.6687 -1.2744 37 1 1.9446 -0.1571 -2.0402 38 1 3.0104 -2.8346 0.1728 39 1 3.4404 -2.7773 -2.2764 40 1 3.9795 -1.2208 -2.9506 41 1 5.9844 -1.4287 -1.6420 42 1 7.0703 -4.8738 -3.1858 43 1 7.3151 -4.0879 -1.6077 44 1 5.4652 -4.5071 0.2917 45 1 3.5477 -6.2890 0.4914 46 1 4.8938 -6.3601 -3.4891 47 1 8.6311 -2.9020 -2.3321 48 1 8.9841 -1.3782 -3.1811 49 1 7.8423 -1.3924 -1.8155 50 1 6.7550 -3.2107 -5.5326 51 1 8.3493 -2.4400 -5.3514 52 1 7.9961 -3.9640 -4.5028 53 1 6.1727 -0.3011 -3.2559 54 1 7.2186 -0.3556 -4.6951 55 1 5.5983 -1.0907 -4.7440 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001646514827.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:12:52 Heat of formation + Delta-G solvation = -8.424022 kcal Electronic energy + Delta-G solvation = -31385.004268 eV Core-core repulsion = 27457.114041 eV Total energy + Delta-G solvation = -3927.890228 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.242 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.75739 -40.31065 -39.12939 -37.07034 -34.91199 -34.60728 -34.38295 -31.08838 -30.25469 -29.51391 -29.16861 -28.27196 -27.85011 -26.60947 -25.26636 -23.88516 -22.86278 -21.98640 -21.74204 -21.57024 -19.67890 -18.61163 -18.31121 -17.50610 -17.01066 -16.73270 -16.35876 -16.27886 -16.05347 -15.76125 -15.32835 -15.17005 -15.02822 -14.89130 -14.49968 -14.44322 -14.34756 -14.26990 -13.96320 -13.77257 -13.49611 -13.37305 -13.14976 -12.91930 -12.89505 -12.84500 -12.70931 -12.60463 -12.53848 -12.32839 -12.27765 -12.15067 -11.85593 -11.68966 -11.55294 -11.51071 -11.33561 -10.74787 -10.72173 -10.60934 -10.32518 -9.35731 -9.14678 -8.96449 -8.21333 -6.30442 1.39742 1.39798 1.43246 1.50943 2.13523 2.39815 2.42071 2.88459 3.11293 3.39554 3.63620 3.72467 3.73517 3.89245 3.92773 4.02568 4.04595 4.18891 4.27993 4.30107 4.32740 4.41064 4.45529 4.48971 4.54115 4.57511 4.68028 4.70900 4.73812 4.75151 4.79924 4.83919 4.87225 5.01807 5.03915 5.04314 5.05484 5.10814 5.12902 5.22618 5.27659 5.29498 5.39818 5.44160 5.57309 5.64027 5.99283 6.03783 6.06663 6.31865 6.35779 6.55347 6.63075 6.84725 7.07785 7.34672 7.38779 8.89597 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.011881 B = 0.002981 C = 0.002601 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2356.087064 B = 9392.124694 C =10762.662806 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 N -0.540 5.540 3 C 0.212 3.788 4 C -0.524 4.524 5 H 0.060 0.940 6 C 0.003 3.997 7 N -0.934 5.934 8 Si 0.967 3.033 9 H -0.270 1.270 10 H -0.281 1.281 11 H -0.267 1.267 12 C 0.028 3.972 13 C 0.133 3.867 14 H 0.061 0.939 15 O -0.543 6.543 16 C 0.053 3.947 17 N -0.670 5.670 18 C 0.087 3.913 19 H 0.068 0.932 20 C 0.115 3.885 21 N -0.439 5.439 22 C -0.012 4.012 23 C -0.071 4.071 24 N -0.537 5.537 25 C 0.163 3.837 26 C -0.077 4.077 27 C -0.146 4.146 28 C -0.140 4.140 29 C -0.147 4.147 30 H 0.078 0.922 31 H 0.056 0.944 32 H 0.010 0.990 33 H 0.005 0.995 34 H -0.043 1.043 35 H 0.264 0.736 36 H 0.086 0.914 37 H 0.023 0.977 38 H 0.372 0.628 39 H 0.072 0.928 40 H 0.035 0.965 41 H 0.343 0.657 42 H 0.119 0.881 43 H 0.099 0.901 44 H 0.175 0.825 45 H 0.166 0.834 46 H 0.223 0.777 47 H 0.072 0.928 48 H 0.062 0.938 49 H 0.048 0.952 50 H 0.057 0.943 51 H 0.062 0.938 52 H 0.073 0.927 53 H 0.039 0.961 54 H 0.066 0.934 55 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.901 -17.832 -12.675 24.905 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 N -0.264 5.264 3 C 0.086 3.914 4 C -0.562 4.562 5 H 0.078 0.922 6 C -0.195 4.195 7 N -0.574 5.574 8 Si 0.792 3.208 9 H -0.195 1.195 10 H -0.207 1.207 11 H -0.192 1.192 12 C -0.102 4.102 13 C 0.072 3.928 14 H 0.079 0.921 15 O -0.347 6.347 16 C -0.077 4.077 17 N -0.302 5.302 18 C -0.024 4.024 19 H 0.086 0.914 20 C -0.008 4.008 21 N -0.120 5.120 22 C -0.147 4.147 23 C -0.218 4.218 24 N -0.256 5.256 25 C -0.120 4.120 26 C -0.078 4.078 27 C -0.203 4.203 28 C -0.198 4.198 29 C -0.205 4.205 30 H 0.096 0.904 31 H 0.075 0.925 32 H 0.028 0.972 33 H 0.023 0.977 34 H -0.026 1.026 35 H 0.073 0.927 36 H 0.104 0.896 37 H 0.041 0.959 38 H 0.219 0.781 39 H 0.090 0.910 40 H 0.053 0.947 41 H 0.164 0.836 42 H 0.137 0.863 43 H 0.117 0.883 44 H 0.192 0.808 45 H 0.183 0.817 46 H 0.240 0.760 47 H 0.091 0.909 48 H 0.081 0.919 49 H 0.067 0.933 50 H 0.076 0.924 51 H 0.081 0.919 52 H 0.092 0.908 53 H 0.058 0.942 54 H 0.086 0.914 55 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 11.883 -18.480 -11.905 24.989 hybrid contribution -0.369 2.433 -0.736 2.568 sum 11.515 -16.047 -12.641 23.450 Atomic orbital electron populations 1.22229 0.87683 1.01491 0.99460 1.61950 1.07744 1.15144 1.41534 1.19352 0.93708 0.83737 0.94597 1.21444 1.34835 0.97479 1.02469 0.92208 1.25881 0.95013 0.98001 1.00623 1.70069 1.39371 1.11870 1.36138 0.85471 0.78854 0.77204 0.79315 1.19496 1.20655 1.19226 1.22780 0.97547 0.98169 0.91677 1.21548 0.93268 0.92060 0.85903 0.92106 1.86614 1.75164 1.33601 1.39340 1.22440 0.90631 0.98904 0.95757 1.60389 1.01829 1.26887 1.41112 1.21972 0.96324 0.93020 0.91059 0.91361 1.22301 0.87987 0.90203 1.00301 1.45448 1.28946 1.28863 1.08745 1.22751 1.00930 1.03215 0.87797 1.22409 1.02239 1.00330 0.96817 1.70196 1.24333 1.28716 1.02345 1.25342 0.93367 0.92666 1.00594 1.20957 0.95229 0.95147 0.96515 1.21955 0.97354 1.02493 0.98526 1.21917 1.01335 1.00273 0.96276 1.21937 1.01074 0.96715 1.00733 0.90368 0.92528 0.97173 0.97676 1.02582 0.92712 0.89613 0.95878 0.78112 0.90984 0.94724 0.83631 0.86330 0.88316 0.80807 0.81709 0.76031 0.90943 0.91912 0.93345 0.92351 0.91916 0.90779 0.94166 0.91447 0.92980 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.56 9.35 127.69 1.19 2.76 16 2 N -0.54 -23.81 4.61 -927.06 -4.27 -28.08 16 3 C 0.21 11.54 4.55 85.56 0.39 11.93 16 4 C -0.52 -30.52 8.41 25.60 0.22 -30.30 16 5 H 0.06 3.45 7.15 -2.91 -0.02 3.43 16 6 C 0.00 0.16 5.46 84.66 0.46 0.62 16 7 N -0.93 -56.71 13.29 21.45 0.28 -56.43 16 8 Si 0.97 45.12 29.54 68.60 2.03 47.14 16 9 H -0.27 -12.29 7.11 99.48 0.71 -11.59 16 10 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 11 H -0.27 -11.96 7.11 99.48 0.71 -11.26 16 12 C 0.03 0.96 4.64 86.30 0.40 1.36 16 13 C 0.13 4.26 3.28 30.59 0.10 4.36 16 14 H 0.06 2.42 6.67 -2.39 -0.02 2.41 16 15 O -0.54 -17.94 13.13 -148.98 -1.96 -19.89 16 16 C 0.05 1.24 4.91 86.30 0.42 1.67 16 17 N -0.67 -12.95 5.56 -491.55 -2.73 -15.69 16 18 C 0.09 1.16 1.71 44.91 0.08 1.24 16 19 H 0.07 1.02 7.52 -2.39 -0.02 1.00 16 20 C 0.11 1.30 5.02 86.38 0.43 1.73 16 21 N -0.44 -7.40 2.69 -529.06 -1.42 -8.83 16 22 C -0.01 -0.25 11.34 83.09 0.94 0.69 16 23 C -0.07 -1.72 11.87 83.52 0.99 -0.73 16 24 N -0.54 -13.75 11.25 -200.31 -2.25 -16.00 16 25 C 0.16 3.06 12.56 180.27 2.26 5.32 16 26 C -0.08 -0.86 0.54 -52.18 -0.03 -0.88 16 27 C -0.15 -1.65 7.88 71.98 0.57 -1.08 16 28 C -0.14 -1.05 8.20 71.98 0.59 -0.46 16 29 C -0.15 -2.23 7.53 71.98 0.54 -1.69 16 30 H 0.08 2.54 8.13 -2.39 -0.02 2.52 16 31 H 0.06 2.44 6.69 -2.38 -0.02 2.42 16 32 H 0.01 0.38 8.14 -2.39 -0.02 0.36 16 33 H 0.01 0.30 6.55 -2.38 -0.02 0.29 16 34 H -0.04 -2.56 8.12 -2.39 -0.02 -2.58 16 35 H 0.26 15.09 8.31 -92.71 -0.77 14.32 16 36 H 0.09 2.55 7.94 -2.39 -0.02 2.53 16 37 H 0.02 0.83 8.01 -2.39 -0.02 0.81 16 38 H 0.37 10.19 9.05 -74.06 -0.67 9.52 16 39 H 0.07 1.67 8.07 -2.39 -0.02 1.65 16 40 H 0.03 0.82 7.59 -2.38 -0.02 0.80 16 41 H 0.34 7.33 5.36 -89.69 -0.48 6.85 16 42 H 0.12 0.72 6.28 -2.39 -0.01 0.71 16 43 H 0.10 1.13 6.66 -2.39 -0.02 1.12 16 44 H 0.17 3.58 8.06 -2.91 -0.02 3.56 16 45 H 0.17 3.64 8.06 -2.91 -0.02 3.61 16 46 H 0.22 2.53 8.06 -2.91 -0.02 2.51 16 47 H 0.07 0.63 6.48 -2.38 -0.02 0.61 16 48 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 49 H 0.05 0.72 6.60 -2.39 -0.02 0.70 16 50 H 0.06 0.45 8.14 -2.39 -0.02 0.43 16 51 H 0.06 0.47 8.14 -2.38 -0.02 0.45 16 52 H 0.07 0.34 6.41 -2.39 -0.02 0.32 16 53 H 0.04 0.77 6.88 -2.39 -0.02 0.75 16 54 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 55 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 Total: -1.00 -71.57 426.13 -1.04 -72.61 By element: Atomic # 1 Polarization: 28.91 SS G_CDS: -0.28 Total: 28.63 kcal Atomic # 6 Polarization: -13.03 SS G_CDS: 9.57 Total: -3.47 kcal Atomic # 7 Polarization: -114.63 SS G_CDS: -10.40 Total: -125.03 kcal Atomic # 8 Polarization: -17.94 SS G_CDS: -1.96 Total: -19.89 kcal Atomic # 14 Polarization: 45.12 SS G_CDS: 2.03 Total: 47.14 kcal Total: -71.57 -1.04 -72.61 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001646514827.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.188 kcal (2) G-P(sol) polarization free energy of solvation -71.569 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.381 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.043 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.612 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.424 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds