Wall clock time and date at job start Tue Mar 31 2020 22:13:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 O 1.21279 * 120.00285 * 2 1 4 4 N 1.34779 * 119.99808 * 180.02562 * 2 1 3 5 5 C 1.46504 * 119.99762 * 179.97438 * 4 2 1 6 6 C 1.53006 * 109.46907 * 155.00125 * 5 4 2 7 7 C 1.52993 * 109.47013 * 180.02562 * 6 5 4 8 8 C 1.53009 * 109.46985 * 299.99814 * 7 6 5 9 9 C 1.50700 * 109.47067 * 180.02562 * 8 7 6 10 10 O 1.21280 * 119.99702 * 346.17990 * 9 8 7 11 11 N 1.34774 * 120.00283 * 166.18841 * 9 8 7 12 12 C 1.46507 * 119.99541 * 4.48478 * 11 9 8 13 13 C 1.50699 * 109.47060 * 263.73322 * 12 11 9 14 14 H 1.07996 * 120.00261 * 0.02562 * 13 12 11 15 15 C 1.37882 * 119.99502 * 180.02562 * 13 12 11 16 16 N 1.31511 * 120.00499 * 0.02562 * 15 13 12 17 17 Si 1.86804 * 119.99732 * 180.02562 * 15 13 12 18 18 H 1.48503 * 109.47180 * 359.97438 * 17 15 13 19 19 H 1.48499 * 109.47225 * 119.99769 * 17 15 13 20 20 H 1.48504 * 109.46868 * 239.99960 * 17 15 13 21 21 C 1.46497 * 120.00591 * 184.21711 * 11 9 8 22 22 C 1.53000 * 109.46611 * 269.28098 * 21 11 9 23 23 C 1.52997 * 109.47652 * 55.79300 * 22 21 11 24 24 C 1.53010 * 109.46783 * 175.79325 * 22 21 11 25 25 C 1.53000 * 109.46965 * 295.78752 * 22 21 11 26 26 C 1.52992 * 109.46988 * 60.00228 * 8 7 6 27 27 C 1.52995 * 109.47354 * 275.00111 * 5 4 2 28 28 H 1.09003 * 109.46910 * 270.00146 * 1 2 3 29 29 H 1.08999 * 109.46824 * 29.99455 * 1 2 3 30 30 H 1.08997 * 109.47148 * 149.99707 * 1 2 3 31 31 H 0.96991 * 120.00370 * 359.97438 * 4 2 1 32 32 H 1.09001 * 109.46743 * 35.00241 * 5 4 2 33 33 H 1.08994 * 109.46942 * 59.99943 * 6 5 4 34 34 H 1.09006 * 109.46905 * 300.00194 * 6 5 4 35 35 H 1.09000 * 109.47127 * 180.02562 * 7 6 5 36 36 H 1.08994 * 109.47660 * 59.99957 * 7 6 5 37 37 H 1.09002 * 109.46891 * 300.00280 * 8 7 6 38 38 H 1.09003 * 109.46894 * 23.73677 * 12 11 9 39 39 H 1.09001 * 109.47001 * 143.73274 * 12 11 9 40 40 H 0.96996 * 120.00074 * 180.02562 * 16 15 13 41 41 H 1.09005 * 109.46494 * 29.27203 * 21 11 9 42 42 H 1.08998 * 109.47370 * 149.27826 * 21 11 9 43 43 H 1.09000 * 109.47090 * 61.89165 * 23 22 21 44 44 H 1.09001 * 109.47431 * 181.88924 * 23 22 21 45 45 H 1.09002 * 109.47116 * 301.89370 * 23 22 21 46 46 H 1.08996 * 109.46912 * 59.99460 * 24 22 21 47 47 H 1.09000 * 109.46627 * 179.97438 * 24 22 21 48 48 H 1.09002 * 109.46973 * 299.99944 * 24 22 21 49 49 H 1.09002 * 109.46832 * 60.00798 * 25 22 21 50 50 H 1.09004 * 109.46665 * 180.02562 * 25 22 21 51 51 H 1.08995 * 109.47531 * 300.00150 * 25 22 21 52 52 H 1.09002 * 109.47263 * 60.00280 * 26 8 7 53 53 H 1.08999 * 109.47449 * 180.02562 * 26 8 7 54 54 H 1.09002 * 109.46914 * 300.00159 * 27 5 4 55 55 H 1.09005 * 109.47452 * 60.00258 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0503 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 3.6459 -1.1672 -0.0011 6 6 4.1561 -2.4748 0.6080 7 6 5.6860 -2.4745 0.6081 8 6 6.1960 -2.3482 -0.8290 9 6 7.7030 -2.3486 -0.8291 10 8 8.3095 -2.1882 0.2089 11 7 8.3769 -2.5269 -1.9826 12 6 7.6476 -2.6221 -3.2497 13 6 7.4356 -4.0725 -3.5995 14 1 7.8066 -4.8461 -2.9435 15 6 6.7680 -4.4119 -4.7572 16 7 6.3167 -3.4700 -5.5563 17 14 6.5047 -6.2098 -5.1906 18 1 7.1042 -7.0662 -4.1359 19 1 5.0491 -6.4878 -5.2865 20 1 7.1519 -6.5046 -6.4942 21 6 9.8388 -2.6198 -1.9702 22 6 10.4399 -1.2244 -2.1511 23 6 9.8943 -0.2899 -1.0695 24 6 11.9632 -1.3062 -2.0334 25 6 10.0634 -0.6820 -3.5313 26 6 5.6858 -1.0407 -1.4381 27 6 4.1554 -1.0412 -1.4382 28 1 -0.3633 0.0000 1.0277 29 1 -0.3633 0.8900 -0.5138 30 1 -0.3633 -0.8899 -0.5139 31 1 1.6959 -2.0072 -0.0005 32 1 4.0094 -0.3255 0.5885 33 1 3.7925 -3.3164 0.0186 34 1 3.7931 -2.5646 1.6320 35 1 6.0495 -3.4062 1.0416 36 1 6.0493 -1.6330 1.1978 37 1 5.8328 -3.1899 -1.4187 38 1 6.6814 -2.1272 -3.1508 39 1 8.2244 -2.1387 -4.0381 40 1 5.8467 -3.7088 -6.3706 41 1 10.1683 -3.0367 -1.0184 42 1 10.1688 -3.2658 -2.7837 43 1 10.1912 -0.6581 -0.0875 44 1 10.2964 0.7122 -1.2186 45 1 8.8065 -0.2579 -1.1320 46 1 12.3519 -1.9721 -2.8038 47 1 12.3915 -0.3122 -2.1627 48 1 12.2315 -1.6927 -1.0501 49 1 8.9782 -0.6237 -3.6151 50 1 10.4921 0.3119 -3.6603 51 1 10.4522 -1.3478 -4.3018 52 1 6.0491 -0.1991 -0.8483 53 1 6.0487 -0.9509 -2.4619 54 1 3.7918 -1.8828 -2.0277 55 1 3.7920 -0.1096 -1.8722 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001650533639.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:13:00 Heat of formation + Delta-G solvation = -122.667984 kcal Electronic energy + Delta-G solvation = -32072.399477 eV Core-core repulsion = 28107.262509 eV Total energy + Delta-G solvation = -3965.136969 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.60509 -40.70694 -38.95034 -37.79805 -36.08881 -35.07056 -34.21307 -31.82973 -31.70401 -29.65173 -29.37247 -28.13900 -28.08286 -27.07042 -24.97241 -23.80458 -23.59339 -21.49694 -21.16321 -20.17105 -19.43279 -18.59676 -17.93776 -17.67080 -17.45917 -17.00716 -16.55739 -16.26288 -16.13907 -15.54597 -15.27032 -15.23209 -14.81040 -14.71930 -14.49207 -14.35481 -14.05066 -14.00407 -13.61375 -13.45060 -13.34752 -13.25840 -13.07626 -13.00698 -12.92478 -12.73893 -12.60571 -12.47637 -12.46536 -12.42921 -12.21653 -12.11849 -11.96316 -11.92749 -11.63244 -11.52339 -11.48854 -11.36065 -11.22978 -10.90033 -10.59816 -10.30513 -10.00874 -9.27960 -8.15008 -6.28349 1.39940 1.44347 1.53758 1.68929 1.86173 2.28803 2.37800 2.52297 3.14457 3.66213 3.69258 3.73817 3.91319 3.94222 4.01430 4.06718 4.13117 4.23681 4.32441 4.41563 4.45238 4.50119 4.56658 4.59466 4.61893 4.70421 4.74284 4.76110 4.82961 4.87754 4.90375 4.93649 4.98347 5.01830 5.05419 5.06251 5.10353 5.13383 5.16204 5.19034 5.23126 5.26227 5.31491 5.43977 5.45183 5.51278 5.54508 5.57275 5.73658 5.96214 6.14226 6.64940 6.68490 6.90388 7.33496 7.37965 7.51321 8.89538 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.008697 B = 0.004164 C = 0.003214 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3218.580552 B = 6722.087283 C = 8710.102646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.500 3.500 3 O -0.604 6.604 4 N -0.713 5.713 5 C 0.149 3.851 6 C -0.112 4.112 7 C -0.086 4.086 8 C -0.099 4.099 9 C 0.515 3.485 10 O -0.586 6.586 11 N -0.591 5.591 12 C 0.234 3.766 13 C -0.543 4.543 14 H 0.049 0.951 15 C 0.026 3.974 16 N -0.917 5.917 17 Si 0.950 3.050 18 H -0.273 1.273 19 H -0.276 1.276 20 H -0.282 1.282 21 C 0.127 3.873 22 C -0.080 4.080 23 C -0.118 4.118 24 C -0.130 4.130 25 C -0.136 4.136 26 C -0.100 4.100 27 C -0.114 4.114 28 H 0.112 0.888 29 H 0.089 0.911 30 H 0.107 0.893 31 H 0.417 0.583 32 H 0.067 0.933 33 H 0.082 0.918 34 H 0.092 0.908 35 H 0.068 0.932 36 H 0.061 0.939 37 H 0.091 0.909 38 H 0.048 0.952 39 H 0.029 0.971 40 H 0.266 0.734 41 H 0.063 0.937 42 H 0.068 0.932 43 H 0.048 0.952 44 H 0.057 0.943 45 H 0.029 0.971 46 H 0.060 0.940 47 H 0.068 0.932 48 H 0.056 0.944 49 H 0.041 0.959 50 H 0.064 0.936 51 H 0.050 0.950 52 H 0.056 0.944 53 H 0.064 0.936 54 H 0.069 0.931 55 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.385 2.295 8.944 11.226 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.289 3.711 3 O -0.486 6.486 4 N -0.365 5.365 5 C 0.044 3.956 6 C -0.149 4.149 7 C -0.125 4.125 8 C -0.120 4.120 9 C 0.304 3.696 10 O -0.469 6.469 11 N -0.320 5.320 12 C 0.114 3.886 13 C -0.581 4.581 14 H 0.067 0.933 15 C -0.174 4.174 16 N -0.557 5.557 17 Si 0.776 3.224 18 H -0.197 1.197 19 H -0.202 1.202 20 H -0.208 1.208 21 C 0.004 3.996 22 C -0.081 4.081 23 C -0.176 4.176 24 C -0.187 4.187 25 C -0.193 4.193 26 C -0.139 4.139 27 C -0.152 4.152 28 H 0.130 0.870 29 H 0.107 0.893 30 H 0.126 0.874 31 H 0.255 0.745 32 H 0.085 0.915 33 H 0.101 0.899 34 H 0.111 0.889 35 H 0.086 0.914 36 H 0.080 0.920 37 H 0.109 0.891 38 H 0.065 0.935 39 H 0.047 0.953 40 H 0.075 0.925 41 H 0.082 0.918 42 H 0.086 0.914 43 H 0.067 0.933 44 H 0.076 0.924 45 H 0.048 0.952 46 H 0.079 0.921 47 H 0.087 0.913 48 H 0.075 0.925 49 H 0.060 0.940 50 H 0.083 0.917 51 H 0.069 0.931 52 H 0.075 0.925 53 H 0.083 0.917 54 H 0.087 0.913 55 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -5.751 3.118 9.285 11.358 hybrid contribution -0.133 -1.256 -0.876 1.537 sum -5.884 1.862 8.409 10.431 Atomic orbital electron populations 1.21896 0.88018 1.06086 1.06242 1.21693 0.92412 0.82903 0.74045 1.90708 1.72261 1.33401 1.52186 1.46097 1.06635 1.09408 1.74383 1.20839 0.80158 0.99059 0.95534 1.21727 0.94529 0.96257 1.02424 1.21205 0.95061 1.02596 0.93631 1.21258 0.91008 1.00247 0.99486 1.20795 0.90718 0.75283 0.82799 1.90557 1.71095 1.52556 1.32645 1.48117 1.06696 1.69080 1.08076 1.19562 0.92655 0.96006 0.80383 1.21722 1.36594 0.93154 1.06673 0.93308 1.25537 0.95132 1.00878 0.95882 1.70010 1.38518 1.33816 1.13335 0.85634 0.77992 0.80857 0.77931 1.19718 1.20204 1.20820 1.21438 0.80147 0.96708 1.01328 1.20916 0.96708 0.94806 0.95650 1.21696 0.99577 0.98427 0.97860 1.21740 0.92531 1.02560 1.01919 1.21917 1.00962 1.00754 0.95700 1.21477 0.96036 0.95557 1.00801 1.21756 0.94340 1.01799 0.97351 0.86959 0.89264 0.87446 0.74513 0.91494 0.89917 0.88931 0.91361 0.92014 0.89060 0.93475 0.95338 0.92507 0.91843 0.91397 0.93286 0.92389 0.95157 0.92093 0.91266 0.92488 0.93964 0.91719 0.93094 0.92518 0.91725 0.91265 0.92928 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.98 10.30 71.24 0.73 -1.25 16 2 C 0.50 11.45 7.90 87.66 0.69 12.15 16 3 O -0.60 -20.58 16.76 -3.03 -0.05 -20.63 16 4 N -0.71 -14.04 5.08 -442.52 -2.25 -16.28 16 5 C 0.15 3.78 2.45 44.99 0.11 3.89 16 6 C -0.11 -2.46 5.39 30.59 0.16 -2.30 16 7 C -0.09 -2.53 4.60 30.60 0.14 -2.39 16 8 C -0.10 -3.50 1.69 -11.54 -0.02 -3.52 16 9 C 0.51 20.85 5.33 87.66 0.47 21.32 16 10 O -0.59 -25.17 13.58 -3.03 -0.04 -25.21 16 11 N -0.59 -24.48 1.98 -826.14 -1.63 -26.12 16 12 C 0.23 10.88 3.95 85.63 0.34 11.21 16 13 C -0.54 -27.56 9.21 25.60 0.24 -27.33 16 14 H 0.05 2.54 7.81 -2.91 -0.02 2.52 16 15 C 0.03 1.33 5.46 84.66 0.46 1.79 16 16 N -0.92 -49.25 13.29 21.45 0.28 -48.97 16 17 Si 0.95 40.87 29.54 68.60 2.03 42.89 16 18 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 19 H -0.28 -11.55 7.11 99.48 0.71 -10.84 16 20 H -0.28 -12.06 7.11 99.48 0.71 -11.35 16 21 C 0.13 4.78 4.60 86.38 0.40 5.18 16 22 C -0.08 -2.55 0.85 -52.18 -0.04 -2.60 16 23 C -0.12 -3.94 7.10 71.98 0.51 -3.43 16 24 C -0.13 -3.31 8.47 71.99 0.61 -2.70 16 25 C -0.14 -4.46 7.44 71.98 0.54 -3.92 16 26 C -0.10 -3.47 4.86 30.61 0.15 -3.32 16 27 C -0.11 -3.45 5.50 30.61 0.17 -3.28 16 28 H 0.11 0.93 8.14 -2.39 -0.02 0.91 16 29 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 30 H 0.11 0.72 8.14 -2.39 -0.02 0.70 16 31 H 0.42 5.17 8.60 -92.71 -0.80 4.37 16 32 H 0.07 2.00 7.58 -2.39 -0.02 1.99 16 33 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 34 H 0.09 1.63 8.14 -2.38 -0.02 1.61 16 35 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 36 H 0.06 1.91 7.95 -2.39 -0.02 1.90 16 37 H 0.09 3.53 7.51 -2.39 -0.02 3.51 16 38 H 0.05 2.26 3.99 -2.39 -0.01 2.25 16 39 H 0.03 1.41 5.62 -2.39 -0.01 1.40 16 40 H 0.27 13.57 8.31 -92.71 -0.77 12.80 16 41 H 0.06 2.43 7.46 -2.38 -0.02 2.41 16 42 H 0.07 2.62 8.08 -2.39 -0.02 2.60 16 43 H 0.05 1.71 7.54 -2.39 -0.02 1.69 16 44 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 45 H 0.03 1.13 6.06 -2.39 -0.01 1.12 16 46 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 47 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 48 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 49 H 0.04 1.59 5.71 -2.39 -0.01 1.58 16 50 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 51 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 52 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 53 H 0.06 2.53 5.47 -2.39 -0.01 2.51 16 54 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 55 H 0.05 1.73 8.14 -2.38 -0.02 1.71 16 Total: -1.00 -66.09 416.49 4.06 -62.03 By element: Atomic # 1 Polarization: 32.70 SS G_CDS: 0.06 Total: 32.76 kcal Atomic # 6 Polarization: -6.13 SS G_CDS: 5.65 Total: -0.48 kcal Atomic # 7 Polarization: -87.77 SS G_CDS: -3.60 Total: -91.37 kcal Atomic # 8 Polarization: -45.75 SS G_CDS: -0.09 Total: -45.84 kcal Atomic # 14 Polarization: 40.87 SS G_CDS: 2.03 Total: 42.89 kcal Total: -66.09 4.06 -62.03 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001650533639.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.635 kcal (2) G-P(sol) polarization free energy of solvation -66.089 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.033 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.668 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds