Wall clock time and date at job start Tue Mar 31 2020 22:33:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42903 * 113.99826 * 2 1 4 4 C 1.52999 * 109.46826 * 150.00212 * 3 2 1 5 5 C 1.52995 * 109.47286 * 180.02562 * 4 3 2 6 6 C 1.52999 * 109.47191 * 300.00403 * 5 4 3 7 7 C 1.53001 * 109.47245 * 179.97438 * 6 5 4 8 8 C 1.50699 * 109.47168 * 174.99624 * 7 6 5 9 9 O 1.21280 * 120.00215 * 0.02562 * 8 7 6 10 10 N 1.34781 * 119.99878 * 180.02562 * 8 7 6 11 11 C 1.46504 * 119.99774 * 180.02562 * 10 8 7 12 12 C 1.53001 * 109.47064 * 179.97438 * 11 10 8 13 13 H 1.09006 * 110.43505 * 303.91458 * 12 11 10 14 14 C 1.54887 * 110.48457 * 66.45283 * 12 11 10 15 15 C 1.54890 * 102.91108 * 156.66033 * 14 12 11 16 16 C 1.54463 * 104.10368 * 322.30112 * 15 14 12 17 17 H 1.09003 * 110.15968 * 142.74863 * 16 15 14 18 18 N 1.46494 * 109.85945 * 264.10431 * 16 15 14 19 19 C 1.36941 * 120.00080 * 272.16631 * 18 16 15 20 20 H 1.08003 * 119.99774 * 0.02562 * 19 18 16 21 21 C 1.38810 * 120.00079 * 179.97438 * 19 18 16 22 22 N 1.31613 * 120.00027 * 0.02562 * 21 19 18 23 23 Si 1.86807 * 119.99784 * 180.02562 * 21 19 18 24 24 H 1.48492 * 109.46984 * 90.00371 * 23 21 19 25 25 H 1.48504 * 109.46879 * 209.99902 * 23 21 19 26 26 H 1.48497 * 109.47253 * 330.00048 * 23 21 19 27 27 C 1.53877 * 106.68421 * 23.34437 * 16 15 14 28 28 C 1.52999 * 109.47335 * 59.99627 * 6 5 4 29 29 C 1.52995 * 109.47262 * 270.00171 * 3 2 1 30 30 H 1.08999 * 109.47519 * 59.99464 * 1 2 3 31 31 H 1.09002 * 109.47297 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.47109 * 299.99449 * 1 2 3 33 33 H 1.09000 * 109.47227 * 30.00656 * 3 2 1 34 34 H 1.09000 * 109.46855 * 60.00216 * 4 3 2 35 35 H 1.08998 * 109.47262 * 300.00099 * 4 3 2 36 36 H 1.09000 * 109.47668 * 180.02562 * 5 4 3 37 37 H 1.09007 * 109.47200 * 59.99993 * 5 4 3 38 38 H 1.09001 * 109.47142 * 299.99335 * 6 5 4 39 39 H 1.09007 * 109.47176 * 55.00147 * 7 6 5 40 40 H 1.08995 * 109.47399 * 294.99725 * 7 6 5 41 41 H 0.96992 * 120.00232 * 359.97438 * 10 8 7 42 42 H 1.09007 * 109.46737 * 60.00056 * 11 10 8 43 43 H 1.08995 * 109.47056 * 300.00113 * 11 10 8 44 44 H 1.09002 * 110.75856 * 275.06943 * 14 12 11 45 45 H 1.09006 * 110.75640 * 38.25929 * 14 12 11 46 46 H 1.09003 * 110.48855 * 80.83451 * 15 14 12 47 47 H 1.09003 * 110.48748 * 203.47148 * 15 14 12 48 48 H 0.97006 * 120.00489 * 92.16720 * 18 16 15 49 49 H 0.97000 * 120.00039 * 179.97438 * 22 21 19 50 50 H 1.08995 * 110.02951 * 240.87549 * 27 16 15 51 51 H 1.08993 * 110.03177 * 119.44086 * 27 16 15 52 52 H 1.09000 * 109.46855 * 60.00131 * 28 6 5 53 53 H 1.08998 * 109.47262 * 180.02562 * 28 6 5 54 54 H 1.09000 * 109.47395 * 300.00381 * 29 3 2 55 55 H 1.08998 * 109.47274 * 60.00614 * 29 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.3589 1.2633 0.7212 5 6 3.9809 2.6610 0.7218 6 6 4.1882 3.1277 -0.7204 7 6 4.8097 4.5258 -0.7198 8 6 5.1270 4.9350 -2.1350 9 8 4.8800 4.1828 -3.0537 10 7 5.6854 6.1371 -2.3798 11 6 5.9934 6.5352 -3.7556 12 6 6.6150 7.9332 -3.7550 13 1 5.9528 8.6440 -3.2606 14 6 8.0000 7.9103 -3.0620 15 6 8.7087 9.1492 -3.6639 16 6 8.2487 9.1666 -5.1383 17 1 8.0972 10.1931 -5.4724 18 7 9.2505 8.5079 -5.9800 19 6 10.2931 9.2304 -6.4962 20 1 10.3769 10.2857 -6.2824 21 6 11.2427 8.6061 -7.2933 22 7 11.1408 7.3200 -7.5534 23 14 12.6652 9.5916 -7.9968 24 1 13.8056 9.5622 -7.0463 25 1 13.0851 8.9989 -9.2921 26 1 12.2357 10.9968 -8.2114 27 6 6.9203 8.3921 -5.1959 28 6 2.8395 3.1699 -1.4417 29 6 2.2176 1.7715 -1.4424 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3633 0.5137 0.8900 33 1 1.3450 1.9994 0.5139 34 1 4.0241 0.5694 0.2073 35 1 3.2112 0.9313 1.7488 36 1 4.9420 2.6309 1.2352 37 1 3.3155 3.3547 1.2360 38 1 4.8536 2.4342 -1.2346 39 1 5.7265 4.5156 -0.1303 40 1 4.1062 5.2359 -0.2854 41 1 5.8826 6.7389 -1.6451 42 1 5.0763 6.5459 -4.3447 43 1 6.6964 5.8248 -4.1907 44 1 7.8934 8.0129 -1.9821 45 1 8.5412 6.9972 -3.3104 46 1 8.3869 10.0576 -3.1546 47 1 9.7911 9.0380 -3.6000 48 1 9.1755 7.5600 -6.1717 49 1 11.8042 6.8838 -8.1107 50 1 7.0212 7.5261 -5.8500 51 1 6.1241 9.0428 -5.5571 52 1 2.1741 3.8635 -0.9275 53 1 2.9872 3.5019 -2.4693 54 1 2.8828 1.0776 -1.9564 55 1 1.2568 1.8016 -1.9562 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001656389932.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:33:48 Heat of formation + Delta-G solvation = -132.872936 kcal Electronic energy + Delta-G solvation = -29376.751353 eV Core-core repulsion = 25411.171865 eV Total energy + Delta-G solvation = -3965.579488 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.12942 -40.03966 -39.37064 -37.54567 -36.20962 -34.89737 -33.04182 -32.37755 -31.70314 -30.35994 -29.02257 -28.14100 -26.84457 -25.53945 -24.74612 -23.65301 -22.55061 -21.47490 -20.97836 -20.73974 -20.51018 -19.13005 -17.89709 -17.58517 -17.30678 -16.83647 -16.60344 -16.40184 -16.21488 -16.01579 -15.63669 -15.27362 -15.01172 -14.94292 -14.84837 -14.46000 -14.23750 -14.11987 -13.81220 -13.52314 -13.24966 -13.15841 -12.96349 -12.88148 -12.79413 -12.47751 -12.43671 -12.34026 -12.15462 -12.04578 -11.92257 -11.75674 -11.69204 -11.62902 -11.55402 -11.50677 -11.45057 -11.38471 -11.17309 -10.89571 -10.69354 -10.30780 -9.98098 -8.96184 -7.93320 -5.20889 1.46133 1.47808 1.56229 1.76021 2.30438 2.56861 2.83524 3.38839 3.68949 3.73253 3.75021 3.81758 3.83399 3.86133 4.01877 4.15757 4.21681 4.29539 4.38458 4.46532 4.47111 4.50452 4.53777 4.55863 4.57748 4.60816 4.62504 4.69487 4.71771 4.80832 4.82925 4.85210 4.86619 4.94141 4.99376 5.07440 5.10162 5.15147 5.16349 5.17491 5.23596 5.24563 5.29947 5.43815 5.46392 5.51641 5.55932 5.57617 5.62065 5.68264 6.30081 6.31422 6.68297 7.34528 7.39681 8.15124 8.35639 9.30420 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.025560 B = 0.001623 C = 0.001594 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1095.210676 B =17249.145991 C =17563.400794 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.413 6.413 3 C 0.089 3.911 4 C -0.116 4.116 5 C -0.102 4.102 6 C -0.073 4.073 7 C -0.128 4.128 8 C 0.501 3.499 9 O -0.586 6.586 10 N -0.716 5.716 11 C 0.134 3.866 12 C -0.082 4.082 13 H 0.111 0.889 14 C -0.105 4.105 15 C -0.139 4.139 16 C 0.160 3.840 17 H 0.044 0.956 18 N -0.735 5.735 19 C -0.237 4.237 20 H 0.076 0.924 21 C -0.080 4.080 22 N -0.972 5.972 23 Si 0.971 3.029 24 H -0.288 1.288 25 H -0.298 1.298 26 H -0.268 1.268 27 C -0.118 4.118 28 C -0.112 4.112 29 C -0.136 4.136 30 H 0.042 0.958 31 H 0.093 0.907 32 H 0.054 0.946 33 H 0.076 0.924 34 H 0.053 0.947 35 H 0.078 0.922 36 H 0.083 0.917 37 H 0.086 0.914 38 H 0.050 0.950 39 H 0.118 0.882 40 H 0.124 0.876 41 H 0.416 0.584 42 H 0.059 0.941 43 H 0.036 0.964 44 H 0.091 0.909 45 H 0.038 0.962 46 H 0.079 0.921 47 H 0.037 0.963 48 H 0.369 0.631 49 H 0.249 0.751 50 H 0.046 0.954 51 H 0.081 0.919 52 H 0.075 0.925 53 H 0.056 0.944 54 H 0.046 0.954 55 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.644 -5.920 24.103 33.597 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.333 6.333 3 C 0.032 3.968 4 C -0.153 4.153 5 C -0.140 4.140 6 C -0.092 4.092 7 C -0.167 4.167 8 C 0.289 3.711 9 O -0.467 6.467 10 N -0.368 5.368 11 C 0.010 3.990 12 C -0.101 4.101 13 H 0.129 0.871 14 C -0.142 4.142 15 C -0.179 4.179 16 C 0.052 3.948 17 H 0.062 0.938 18 N -0.375 5.375 19 C -0.369 4.369 20 H 0.094 0.906 21 C -0.272 4.272 22 N -0.624 5.624 23 Si 0.801 3.199 24 H -0.215 1.215 25 H -0.225 1.225 26 H -0.193 1.193 27 C -0.157 4.157 28 C -0.150 4.150 29 C -0.174 4.174 30 H 0.061 0.939 31 H 0.111 0.889 32 H 0.073 0.927 33 H 0.094 0.906 34 H 0.072 0.928 35 H 0.097 0.903 36 H 0.102 0.898 37 H 0.104 0.896 38 H 0.069 0.931 39 H 0.136 0.864 40 H 0.142 0.858 41 H 0.254 0.746 42 H 0.077 0.923 43 H 0.055 0.945 44 H 0.109 0.891 45 H 0.057 0.943 46 H 0.098 0.902 47 H 0.056 0.944 48 H 0.201 0.799 49 H 0.058 0.942 50 H 0.065 0.935 51 H 0.099 0.901 52 H 0.094 0.906 53 H 0.075 0.925 54 H 0.065 0.935 55 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -22.612 -6.434 23.394 33.166 hybrid contribution 1.112 0.113 -1.174 1.621 sum -21.500 -6.321 22.220 31.559 Atomic orbital electron populations 1.22935 0.79980 1.03560 1.00646 1.87881 1.21111 1.29116 1.95184 1.22270 0.95493 0.83994 0.95063 1.21585 0.94765 0.98255 1.00732 1.21531 1.02157 0.95351 0.94936 1.20917 0.96363 0.95262 0.96693 1.21789 1.04637 0.98633 0.91690 1.21485 0.76050 0.80734 0.92796 1.90686 1.54379 1.53158 1.48450 1.45943 1.62942 1.18624 1.09339 1.21195 0.98956 0.95228 0.83611 1.22092 0.96909 0.95110 0.95999 0.87099 1.22422 0.94572 0.97127 1.00093 1.22983 0.99264 0.98474 0.97181 1.21205 0.88135 0.95055 0.90401 0.93789 1.42778 1.27336 1.08846 1.58546 1.19673 1.01520 0.93281 1.22408 0.90597 1.25551 1.02344 0.96910 1.02368 1.69830 1.38035 1.10522 1.43985 0.85164 0.79561 0.78153 0.77064 1.21534 1.22508 1.19282 1.22382 0.97018 0.99667 0.96610 1.21606 0.96123 0.95947 1.01309 1.21971 1.00594 0.97422 0.97414 0.93911 0.88888 0.92713 0.90646 0.92804 0.90336 0.89798 0.89555 0.93109 0.86436 0.85785 0.74643 0.92283 0.94535 0.89094 0.94347 0.90244 0.94374 0.79916 0.94249 0.93485 0.90052 0.90649 0.92513 0.93518 0.92239 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.30 10.82 113.37 1.23 1.52 16 2 O -0.41 -7.63 10.35 -148.98 -1.54 -9.17 16 3 C 0.09 1.36 2.61 30.59 0.08 1.44 16 4 C -0.12 -1.57 5.57 30.59 0.17 -1.40 16 5 C -0.10 -1.01 5.20 30.59 0.16 -0.85 16 6 C -0.07 -1.12 1.84 -10.79 -0.02 -1.14 16 7 C -0.13 -1.52 5.17 29.85 0.15 -1.36 16 8 C 0.50 10.74 7.55 87.66 0.66 11.40 16 9 O -0.59 -18.64 13.97 -3.03 -0.04 -18.69 16 10 N -0.72 -13.22 5.40 -463.04 -2.50 -15.72 16 11 C 0.13 3.33 4.97 86.38 0.43 3.76 16 12 C -0.08 -1.88 2.93 -9.72 -0.03 -1.91 16 13 H 0.11 1.85 8.14 -2.38 -0.02 1.83 16 14 C -0.10 -2.70 6.00 31.88 0.19 -2.51 16 15 C -0.14 -4.47 6.55 31.74 0.21 -4.26 16 16 C 0.16 6.11 3.56 45.79 0.16 6.27 16 17 H 0.04 1.70 8.09 -2.39 -0.02 1.68 16 18 N -0.74 -37.35 5.07 -319.19 -1.62 -38.97 16 19 C -0.24 -13.27 9.96 84.03 0.84 -12.43 16 20 H 0.08 4.06 7.83 -2.91 -0.02 4.04 16 21 C -0.08 -4.67 5.50 84.86 0.47 -4.20 16 22 N -0.97 -61.04 13.06 21.65 0.28 -60.76 16 23 Si 0.97 46.83 29.55 68.60 2.03 48.86 16 24 H -0.29 -13.65 7.11 99.48 0.71 -12.94 16 25 H -0.30 -14.57 7.11 99.48 0.71 -13.87 16 26 H -0.27 -12.13 7.11 99.48 0.71 -11.43 16 27 C -0.12 -3.63 6.14 31.32 0.19 -3.43 16 28 C -0.11 -1.96 4.94 30.61 0.15 -1.81 16 29 C -0.14 -2.50 5.54 30.61 0.17 -2.33 16 30 H 0.04 0.48 7.87 -2.39 -0.02 0.46 16 31 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 32 H 0.05 0.48 8.08 -2.39 -0.02 0.46 16 33 H 0.08 0.89 7.79 -2.39 -0.02 0.87 16 34 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 35 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 36 H 0.08 0.65 8.14 -2.39 -0.02 0.63 16 37 H 0.09 0.53 8.14 -2.38 -0.02 0.51 16 38 H 0.05 1.09 7.96 -2.39 -0.02 1.07 16 39 H 0.12 0.91 8.14 -2.38 -0.02 0.89 16 40 H 0.12 0.74 8.14 -2.39 -0.02 0.72 16 41 H 0.42 4.66 8.32 -92.71 -0.77 3.89 16 42 H 0.06 1.54 8.14 -2.38 -0.02 1.52 16 43 H 0.04 1.16 8.10 -2.39 -0.02 1.15 16 44 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16 45 H 0.04 1.23 8.02 -2.38 -0.02 1.21 16 46 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 47 H 0.04 1.49 8.04 -2.39 -0.02 1.47 16 48 H 0.37 20.54 7.52 -92.70 -0.70 19.84 16 49 H 0.25 15.20 8.31 -92.71 -0.77 14.43 16 50 H 0.05 1.70 7.32 -2.39 -0.02 1.68 16 51 H 0.08 2.16 8.14 -2.39 -0.02 2.14 16 52 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 53 H 0.06 1.38 5.95 -2.39 -0.01 1.36 16 54 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 55 H 0.06 1.06 7.87 -2.39 -0.02 1.04 16 Total: -1.00 -75.87 424.62 1.20 -74.67 By element: Atomic # 1 Polarization: 33.64 SS G_CDS: -0.62 Total: 33.02 kcal Atomic # 6 Polarization: -18.46 SS G_CDS: 5.21 Total: -13.25 kcal Atomic # 7 Polarization: -111.61 SS G_CDS: -3.83 Total: -115.45 kcal Atomic # 8 Polarization: -26.27 SS G_CDS: -1.58 Total: -27.86 kcal Atomic # 14 Polarization: 46.83 SS G_CDS: 2.03 Total: 48.86 kcal Total: -75.87 1.20 -74.67 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001656389932.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.204 kcal (2) G-P(sol) polarization free energy of solvation -75.874 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.078 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.205 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.669 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.873 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds