Wall clock time and date at job start Tue Mar 31 2020 22:00:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31007 * 1 3 3 C 1.50694 * 120.00069 * 2 1 4 4 C 1.50696 * 119.99837 * 179.97438 * 2 1 3 5 5 H 1.09007 * 109.47272 * 355.00862 * 4 2 1 6 6 C 1.53004 * 109.47109 * 115.00029 * 4 2 1 7 7 C 1.50697 * 109.47405 * 184.99833 * 6 4 2 8 8 O 1.21275 * 119.99761 * 0.02562 * 7 6 4 9 9 N 1.34781 * 119.99828 * 179.97438 * 7 6 4 10 10 C 1.46919 * 120.62903 * 354.42149 * 9 7 6 11 11 C 1.53199 * 108.77419 * 126.36683 * 10 9 7 12 12 C 1.53047 * 109.30869 * 54.63247 * 11 10 9 13 13 H 1.08999 * 109.46070 * 58.64878 * 12 11 10 14 14 C 1.53005 * 109.45598 * 178.61393 * 12 11 10 15 15 C 1.53033 * 109.53981 * 298.63306 * 12 11 10 16 16 C 1.46929 * 120.62692 * 174.14041 * 9 7 6 17 17 H 1.08998 * 109.58321 * 113.84883 * 16 9 7 18 18 C 1.53003 * 109.58571 * 353.41945 * 16 9 7 19 19 N 1.46501 * 109.46771 * 181.62045 * 18 16 9 20 20 C 1.36934 * 120.00156 * 184.94733 * 19 18 16 21 21 H 1.08007 * 119.99892 * 0.02562 * 20 19 18 22 22 C 1.38808 * 120.00438 * 180.02562 * 20 19 18 23 23 N 1.31623 * 119.99586 * 359.97438 * 22 20 19 24 24 Si 1.86797 * 120.00390 * 180.02562 * 22 20 19 25 25 H 1.48505 * 109.47438 * 89.99472 * 24 22 20 26 26 H 1.48493 * 109.47298 * 209.99865 * 24 22 20 27 27 H 1.48506 * 109.47160 * 329.99714 * 24 22 20 28 28 O 1.42900 * 109.47672 * 235.00184 * 4 2 1 29 29 C 1.42898 * 114.00027 * 89.99995 * 28 4 2 30 30 C 1.52999 * 109.47254 * 180.02562 * 29 28 4 31 31 H 1.07998 * 119.99521 * 359.97438 * 1 2 3 32 32 H 1.07994 * 120.00075 * 180.02562 * 1 2 3 33 33 H 1.09005 * 109.47245 * 179.97438 * 3 2 1 34 34 H 1.09001 * 109.47159 * 299.99730 * 3 2 1 35 35 H 1.09004 * 109.47577 * 59.99507 * 3 2 1 36 36 H 1.09000 * 109.46844 * 305.00635 * 6 4 2 37 37 H 1.09002 * 109.46867 * 64.99754 * 6 4 2 38 38 H 1.08996 * 109.58807 * 246.15000 * 10 9 7 39 39 H 1.08994 * 109.59367 * 6.43692 * 10 9 7 40 40 H 1.08994 * 109.49819 * 174.58203 * 11 10 9 41 41 H 1.08994 * 109.49668 * 294.65071 * 11 10 9 42 42 H 1.09001 * 109.47347 * 60.00098 * 14 12 11 43 43 H 1.08996 * 109.47042 * 180.02562 * 14 12 11 44 44 H 1.08998 * 109.47196 * 300.00080 * 14 12 11 45 45 H 1.08997 * 109.49968 * 181.31891 * 15 12 11 46 46 H 1.09005 * 109.50142 * 301.38558 * 15 12 11 47 47 H 1.08997 * 109.47266 * 301.62583 * 18 16 9 48 48 H 1.08997 * 109.46994 * 61.62582 * 18 16 9 49 49 H 0.97001 * 119.99878 * 4.95088 * 19 18 16 50 50 H 0.97000 * 119.99467 * 179.97438 * 23 22 20 51 51 H 1.09003 * 109.47326 * 300.00645 * 29 28 4 52 52 H 1.09005 * 109.47235 * 60.00430 * 29 28 4 53 53 H 1.08996 * 109.47165 * 59.99896 * 30 29 28 54 54 H 1.09003 * 109.46935 * 180.02562 * 30 29 28 55 55 H 1.09004 * 109.46746 * 299.99718 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 6 2.0635 -1.3051 0.0006 5 1 1.3585 -2.1316 0.0904 6 6 2.8465 -1.4426 -1.3067 7 6 3.5009 -2.7990 -1.3601 8 8 3.3550 -3.5791 -0.4431 9 7 4.2475 -3.1454 -2.4275 10 6 4.3336 -2.2629 -3.5989 11 6 5.8102 -1.9931 -3.9055 12 6 6.5452 -3.3258 -4.0669 13 1 6.0842 -3.8997 -4.8708 14 6 8.0131 -3.0602 -4.4074 15 6 6.4601 -4.1188 -2.7609 16 6 4.9954 -4.4100 -2.4391 17 1 4.5818 -5.0722 -3.1996 18 6 4.8968 -5.0768 -1.0655 19 7 5.6752 -6.3179 -1.0682 20 6 5.6538 -7.1420 0.0251 21 1 5.0627 -6.8772 0.8894 22 6 6.3917 -8.3177 0.0228 23 7 7.1117 -8.6406 -1.0307 24 14 6.3619 -9.4422 1.5141 25 1 5.2591 -10.4263 1.3701 26 1 7.6568 -10.1615 1.6176 27 1 6.1460 -8.6327 2.7403 28 8 2.9709 -1.3309 1.1042 29 6 2.4139 -1.8757 2.3021 30 6 3.4679 -1.8532 3.4109 31 1 -0.5399 0.9353 0.0004 32 1 -0.5400 -0.9353 0.0004 33 1 3.1353 1.1059 0.0005 34 1 1.8003 1.8766 -0.8900 35 1 1.8002 1.8767 0.8899 36 1 2.1657 -1.3340 -2.1511 37 1 3.6117 -0.6678 -1.3551 38 1 3.8650 -2.7464 -4.4560 39 1 3.8247 -1.3227 -3.3865 40 1 5.8911 -1.4189 -4.8283 41 1 6.2547 -1.4289 -3.0857 42 1 8.4742 -2.4859 -3.6039 43 1 8.5366 -4.0092 -4.5229 44 1 8.0739 -2.4964 -5.3382 45 1 7.0036 -5.0574 -2.8690 46 1 6.8992 -3.5353 -1.9516 47 1 5.2907 -4.4025 -0.3051 48 1 3.8535 -5.3028 -0.8455 49 1 6.2059 -6.5559 -1.8446 50 1 7.6277 -9.4620 -1.0321 51 1 1.5537 -1.2795 2.6067 52 1 2.0981 -2.9032 2.1213 53 1 3.7833 -0.8257 3.5915 54 1 3.0431 -2.2693 4.3244 55 1 4.3282 -2.4493 3.1064 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001656546344.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:00:49 Heat of formation + Delta-G solvation = -72.163314 kcal Electronic energy + Delta-G solvation = -31692.880198 eV Core-core repulsion = 27729.933277 eV Total energy + Delta-G solvation = -3962.946922 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.66707 -39.74859 -38.44476 -36.70077 -36.07480 -34.89646 -34.01362 -32.55243 -31.56879 -30.85683 -29.10634 -28.19307 -27.24384 -25.62085 -24.66887 -24.04986 -23.68347 -22.37801 -21.29511 -20.03981 -19.73370 -19.07556 -17.88575 -17.80609 -17.17027 -16.67938 -16.47403 -16.36390 -15.68495 -15.59045 -15.41692 -15.17761 -14.87376 -14.69234 -14.68397 -14.51669 -14.42247 -14.16476 -13.91850 -13.79203 -13.40283 -13.24973 -13.15524 -12.90272 -12.83549 -12.78270 -12.69868 -12.58046 -12.50664 -12.47056 -12.21575 -12.02529 -12.01377 -11.92078 -11.81166 -11.75940 -11.37678 -11.20400 -11.00357 -10.46292 -10.15530 -9.98884 -9.53725 -8.96549 -7.97664 -5.25499 1.20843 1.41490 1.44491 1.53443 1.74564 2.01794 2.54533 2.80469 3.34738 3.46889 3.75812 3.80401 3.86151 3.92959 3.95173 4.08745 4.11432 4.14546 4.22430 4.27478 4.32507 4.37225 4.44478 4.47051 4.53386 4.59073 4.67469 4.70990 4.74756 4.81124 4.82899 4.85330 4.91818 4.93318 4.96107 5.01206 5.08872 5.10046 5.12426 5.20111 5.20457 5.21455 5.28661 5.30547 5.40680 5.44320 5.54611 5.65560 5.72582 5.84587 6.25455 6.35485 6.56096 7.30868 7.34396 8.06399 8.33977 9.26046 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.008650 B = 0.003963 C = 0.002922 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3236.238143 B = 7063.191698 C = 9579.921673 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.153 4.153 3 C -0.109 4.109 4 C 0.137 3.863 5 H 0.052 0.948 6 C -0.122 4.122 7 C 0.499 3.501 8 O -0.563 6.563 9 N -0.608 5.608 10 C 0.101 3.899 11 C -0.122 4.122 12 C -0.089 4.089 13 H 0.077 0.923 14 C -0.142 4.142 15 C -0.111 4.111 16 C 0.151 3.849 17 H 0.064 0.936 18 C 0.178 3.822 19 N -0.745 5.745 20 C -0.243 4.243 21 H 0.060 0.940 22 C -0.072 4.072 23 N -0.967 5.967 24 Si 0.973 3.027 25 H -0.284 1.284 26 H -0.287 1.287 27 H -0.276 1.276 28 O -0.386 6.386 29 C 0.066 3.934 30 C -0.145 4.145 31 H 0.121 0.879 32 H 0.094 0.906 33 H 0.057 0.943 34 H 0.084 0.916 35 H 0.066 0.934 36 H 0.136 0.864 37 H 0.118 0.882 38 H 0.084 0.916 39 H 0.117 0.883 40 H 0.109 0.891 41 H 0.060 0.940 42 H 0.048 0.952 43 H 0.042 0.958 44 H 0.079 0.921 45 H 0.052 0.948 46 H 0.044 0.956 47 H -0.004 1.004 48 H 0.032 0.968 49 H 0.373 0.627 50 H 0.253 0.747 51 H 0.060 0.940 52 H 0.027 0.973 53 H 0.071 0.929 54 H 0.085 0.915 55 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.682 25.571 -6.606 28.489 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.153 4.153 3 C -0.166 4.166 4 C 0.078 3.922 5 H 0.070 0.930 6 C -0.162 4.162 7 C 0.289 3.711 8 O -0.441 6.441 9 N -0.342 5.342 10 C -0.020 4.020 11 C -0.160 4.160 12 C -0.107 4.107 13 H 0.095 0.905 14 C -0.199 4.199 15 C -0.149 4.149 16 C 0.047 3.953 17 H 0.082 0.918 18 C 0.052 3.948 19 N -0.391 5.391 20 C -0.375 4.375 21 H 0.078 0.922 22 C -0.264 4.264 23 N -0.618 5.618 24 Si 0.802 3.198 25 H -0.211 1.211 26 H -0.213 1.213 27 H -0.201 1.201 28 O -0.305 6.305 29 C -0.011 4.011 30 C -0.202 4.202 31 H 0.139 0.861 32 H 0.113 0.887 33 H 0.076 0.924 34 H 0.103 0.897 35 H 0.085 0.915 36 H 0.154 0.846 37 H 0.136 0.864 38 H 0.102 0.898 39 H 0.135 0.865 40 H 0.127 0.873 41 H 0.079 0.921 42 H 0.067 0.933 43 H 0.061 0.939 44 H 0.098 0.902 45 H 0.070 0.930 46 H 0.063 0.937 47 H 0.014 0.986 48 H 0.050 0.950 49 H 0.206 0.794 50 H 0.062 0.938 51 H 0.078 0.922 52 H 0.046 0.954 53 H 0.090 0.910 54 H 0.104 0.896 55 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -10.632 25.210 -5.965 28.003 hybrid contribution 0.292 -1.657 0.848 1.884 sum -10.339 23.553 -5.117 26.227 Atomic orbital electron populations 1.23912 0.94800 1.02897 0.99758 1.22206 0.95694 0.95938 1.01503 1.20726 0.99907 0.93302 1.02673 1.20858 0.90633 0.94397 0.86262 0.93008 1.21878 1.01783 0.93710 0.98798 1.21326 0.78756 0.89824 0.81207 1.90792 1.61786 1.52807 1.38674 1.48273 1.47219 1.20581 1.18138 1.22121 0.98000 0.94830 0.87043 1.21975 0.94199 0.96361 1.03493 1.21137 0.97313 0.96756 0.95505 0.90506 1.21779 0.94802 1.01366 1.01990 1.21781 0.94519 1.00105 0.98512 1.21063 0.92441 0.84975 0.96846 0.91783 1.21070 0.94153 0.86019 0.93565 1.42755 1.56324 1.22261 1.17721 1.19488 1.22357 1.00623 0.95024 0.92243 1.25515 1.00154 0.99876 1.00839 1.69807 1.35188 1.26077 1.30717 0.85148 0.76888 0.78722 0.79075 1.21068 1.21299 1.20133 1.87871 1.39524 1.83189 1.19930 1.22396 0.96823 0.96525 0.85338 1.21703 0.98581 1.02715 0.97238 0.86124 0.88725 0.92403 0.89723 0.91522 0.84645 0.86393 0.89776 0.86518 0.87269 0.92095 0.93255 0.93873 0.90202 0.92961 0.93748 0.98637 0.95002 0.79413 0.93826 0.92204 0.95416 0.91047 0.89625 0.94427 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.51 13.95 67.77 0.95 -1.57 16 2 C -0.15 -2.58 5.05 -16.50 -0.08 -2.66 16 3 C -0.11 -1.47 9.69 71.23 0.69 -0.78 16 4 C 0.14 3.21 1.78 29.85 0.05 3.26 16 5 H 0.05 1.40 7.25 -2.38 -0.02 1.39 16 6 C -0.12 -2.49 3.60 29.85 0.11 -2.39 16 7 C 0.50 15.65 7.41 87.66 0.65 16.30 16 8 O -0.56 -23.85 10.98 10.77 0.12 -23.73 16 9 N -0.61 -17.31 2.98 -795.83 -2.37 -19.68 16 10 C 0.10 1.68 6.35 86.37 0.55 2.23 16 11 C -0.12 -2.00 5.36 30.68 0.16 -1.84 16 12 C -0.09 -2.04 2.68 -10.77 -0.03 -2.07 16 13 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 14 C -0.14 -2.99 9.19 71.98 0.66 -2.32 16 15 C -0.11 -3.79 4.35 30.53 0.13 -3.65 16 16 C 0.15 5.62 3.09 44.83 0.14 5.75 16 17 H 0.06 2.43 8.14 -2.39 -0.02 2.41 16 18 C 0.18 8.85 4.14 86.38 0.36 9.20 16 19 N -0.75 -43.05 5.38 -343.45 -1.85 -44.90 16 20 C -0.24 -15.30 9.99 84.03 0.84 -14.46 16 21 H 0.06 3.77 7.83 -2.91 -0.02 3.75 16 22 C -0.07 -4.44 5.50 84.86 0.47 -3.97 16 23 N -0.97 -62.12 13.06 21.65 0.28 -61.84 16 24 Si 0.97 49.67 29.55 68.60 2.03 51.69 16 25 H -0.28 -14.09 7.11 99.48 0.71 -13.38 16 26 H -0.29 -14.30 7.11 99.48 0.71 -13.59 16 27 H -0.28 -13.67 7.11 99.48 0.71 -12.96 16 28 O -0.39 -11.29 9.01 -135.20 -1.22 -12.51 16 29 C 0.07 1.81 6.46 71.98 0.46 2.27 16 30 C -0.15 -3.72 10.28 71.98 0.74 -2.98 16 31 H 0.12 1.24 8.05 -2.91 -0.02 1.21 16 32 H 0.09 1.40 7.84 -2.91 -0.02 1.38 16 33 H 0.06 0.90 7.50 -2.38 -0.02 0.88 16 34 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 35 H 0.07 0.86 8.14 -2.38 -0.02 0.84 16 36 H 0.14 1.78 7.71 -2.39 -0.02 1.77 16 37 H 0.12 2.01 7.44 -2.39 -0.02 1.99 16 38 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 39 H 0.12 1.16 5.93 -2.39 -0.01 1.15 16 40 H 0.11 1.07 8.14 -2.39 -0.02 1.05 16 41 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 42 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 43 H 0.04 1.03 8.14 -2.39 -0.02 1.01 16 44 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 45 H 0.05 2.10 6.88 -2.39 -0.02 2.09 16 46 H 0.04 1.66 8.14 -2.38 -0.02 1.64 16 47 H 0.00 -0.23 7.26 -2.39 -0.02 -0.25 16 48 H 0.03 1.75 6.21 -2.39 -0.01 1.74 16 49 H 0.37 21.91 6.35 -92.71 -0.59 21.33 16 50 H 0.25 15.56 8.31 -92.71 -0.77 14.79 16 51 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 52 H 0.03 0.89 8.09 -2.38 -0.02 0.87 16 53 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 54 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 55 H 0.04 1.16 8.14 -2.38 -0.02 1.14 16 Total: -1.00 -80.82 425.93 4.09 -76.73 By element: Atomic # 1 Polarization: 33.65 SS G_CDS: 0.25 Total: 33.89 kcal Atomic # 6 Polarization: -6.51 SS G_CDS: 6.85 Total: 0.34 kcal Atomic # 7 Polarization: -122.48 SS G_CDS: -3.93 Total: -126.41 kcal Atomic # 8 Polarization: -35.15 SS G_CDS: -1.10 Total: -36.25 kcal Atomic # 14 Polarization: 49.67 SS G_CDS: 2.03 Total: 51.69 kcal Total: -80.82 4.09 -76.73 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001656546344.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.565 kcal (2) G-P(sol) polarization free energy of solvation -80.818 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.253 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.090 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.728 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.163 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds