Wall clock time and date at job start Tue Mar 31 2020 22:00:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50697 * 120.00133 * 2 1 4 4 C 1.50705 * 119.99924 * 179.97438 * 2 1 3 5 5 H 1.08994 * 109.47366 * 4.99909 * 4 2 1 6 6 C 1.53007 * 109.46894 * 245.00387 * 4 2 1 7 7 C 1.50699 * 109.46896 * 174.93811 * 6 4 2 8 8 O 1.21282 * 120.00014 * 7.50933 * 7 6 4 9 9 N 1.34770 * 120.00094 * 187.50057 * 7 6 4 10 10 C 1.46929 * 120.62998 * 5.61473 * 9 7 6 11 11 C 1.53193 * 108.77837 * 126.36526 * 10 9 7 12 12 C 1.53038 * 109.30994 * 54.63622 * 11 10 9 13 13 H 1.08999 * 109.46075 * 58.64236 * 12 11 10 14 14 C 1.53004 * 109.45924 * 178.61739 * 12 11 10 15 15 C 1.53039 * 109.54034 * 298.63553 * 12 11 10 16 16 C 1.46924 * 120.63452 * 185.33262 * 9 7 6 17 17 H 1.09003 * 109.58934 * 113.84261 * 16 9 7 18 18 C 1.52996 * 109.58302 * 353.41984 * 16 9 7 19 19 N 1.46505 * 109.47192 * 70.38093 * 18 16 9 20 20 C 1.36938 * 119.99691 * 176.99901 * 19 18 16 21 21 H 1.08002 * 120.00392 * 19.47488 * 20 19 18 22 22 C 1.38814 * 119.99298 * 199.48082 * 20 19 18 23 23 N 1.31616 * 120.00390 * 8.42806 * 22 20 19 24 24 Si 1.86811 * 119.99722 * 188.43190 * 22 20 19 25 25 H 1.48497 * 109.46761 * 60.00008 * 24 22 20 26 26 H 1.48493 * 109.46800 * 179.97438 * 24 22 20 27 27 H 1.48497 * 109.46720 * 300.00127 * 24 22 20 28 28 O 1.42904 * 109.47119 * 125.00472 * 4 2 1 29 29 C 1.42895 * 113.99606 * 277.13110 * 28 4 2 30 30 C 1.53000 * 109.47010 * 185.30942 * 29 28 4 31 31 H 1.08004 * 119.99635 * 180.02562 * 1 2 3 32 32 H 1.07991 * 119.99924 * 0.02562 * 1 2 3 33 33 H 1.09006 * 109.46935 * 269.99777 * 3 2 1 34 34 H 1.08997 * 109.47123 * 29.99209 * 3 2 1 35 35 H 1.09004 * 109.47563 * 149.99783 * 3 2 1 36 36 H 1.08993 * 109.47018 * 54.93765 * 6 4 2 37 37 H 1.09000 * 109.46969 * 294.93856 * 6 4 2 38 38 H 1.09001 * 109.58471 * 246.15675 * 10 9 7 39 39 H 1.09004 * 109.58632 * 6.43674 * 10 9 7 40 40 H 1.09002 * 109.49672 * 174.58478 * 11 10 9 41 41 H 1.08996 * 109.49934 * 294.65077 * 11 10 9 42 42 H 1.08995 * 109.47053 * 59.99891 * 14 12 11 43 43 H 1.09002 * 109.47271 * 180.02562 * 14 12 11 44 44 H 1.09003 * 109.46628 * 299.99789 * 14 12 11 45 45 H 1.09000 * 109.50285 * 181.32221 * 15 12 11 46 46 H 1.09003 * 109.49802 * 301.38351 * 15 12 11 47 47 H 1.09007 * 109.47178 * 190.38032 * 18 16 9 48 48 H 1.08994 * 109.47529 * 310.37221 * 18 16 9 49 49 H 0.96999 * 119.99760 * 356.99045 * 19 18 16 50 50 H 0.97000 * 120.00447 * 182.59894 * 23 22 20 51 51 H 1.08999 * 109.47582 * 305.31027 * 29 28 4 52 52 H 1.09003 * 109.47425 * 65.31399 * 29 28 4 53 53 H 1.08997 * 109.47280 * 187.04817 * 30 29 28 54 54 H 1.08993 * 109.47510 * 307.05399 * 30 29 28 55 55 H 1.09007 * 109.46903 * 67.05017 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.0635 -1.3052 0.0006 5 1 1.3586 -2.1317 -0.0886 6 6 2.8464 -1.4414 1.3081 7 6 3.4995 -2.7984 1.3634 8 8 3.4683 -3.5263 0.3938 9 7 4.1185 -3.2030 2.4901 10 6 4.0603 -2.3869 3.7105 11 6 3.5511 -3.2586 4.8628 12 6 4.4312 -4.5049 4.9816 13 1 5.4647 -4.2046 5.1540 14 6 3.9468 -5.3612 6.1535 15 6 4.3458 -5.3171 3.6873 16 6 4.8591 -4.4715 2.5233 17 1 5.9215 -4.2708 2.6617 18 6 4.6435 -5.2256 1.2097 19 7 5.3423 -4.5294 0.1265 20 6 5.3430 -5.0561 -1.1376 21 1 4.5976 -5.7851 -1.4193 22 6 6.3020 -4.6531 -2.0567 23 7 7.3064 -3.8953 -1.6705 24 14 6.1669 -5.1863 -3.8420 25 1 4.8904 -4.6861 -4.4126 26 1 7.3060 -4.6270 -4.6131 27 1 6.1964 -6.6689 -3.9193 28 8 2.9710 -1.3317 -1.1030 29 6 2.3716 -1.7256 -2.3389 30 6 3.4531 -1.8468 -3.4144 31 1 -0.5400 -0.9354 0.0004 32 1 -0.5399 0.9352 -0.0004 33 1 2.2452 1.6197 -1.0277 34 1 1.4744 2.0647 0.5137 35 1 3.0160 1.1748 0.5139 36 1 2.1658 -1.3311 2.1522 37 1 3.6123 -0.6673 1.3553 38 1 5.0562 -2.0127 3.9477 39 1 3.3817 -1.5478 3.5569 40 1 3.5942 -2.6928 5.7935 41 1 2.5215 -3.5570 4.6658 42 1 2.9132 -5.6611 5.9814 43 1 4.5738 -6.2487 6.2385 44 1 4.0088 -4.7832 7.0756 45 1 4.9542 -6.2166 3.7813 46 1 3.3089 -5.5972 3.5013 47 1 5.0360 -6.2383 1.3034 48 1 3.5777 -5.2685 0.9860 49 1 5.8044 -3.6954 0.3047 50 1 7.9557 -3.5825 -2.3197 51 1 1.8760 -2.6881 -2.2120 52 1 1.6396 -0.9772 -2.6425 53 1 2.9845 -2.0239 -4.3825 54 1 4.0312 -0.9236 -3.4541 55 1 4.1140 -2.6793 -3.1729 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001656546345.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:00:53 Heat of formation + Delta-G solvation = -44.692393 kcal Electronic energy + Delta-G solvation = -32724.408530 eV Core-core repulsion = 28762.652837 eV Total energy + Delta-G solvation = -3961.755693 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.49680 -39.66024 -38.23002 -36.42350 -35.93878 -34.69388 -33.88188 -32.43540 -31.53255 -30.81039 -29.06313 -28.20606 -27.10106 -25.24401 -24.36375 -24.12445 -23.65580 -22.49468 -21.00148 -19.92021 -19.71436 -18.87189 -17.81872 -17.58815 -16.83949 -16.66386 -16.52998 -16.07541 -15.67184 -15.47747 -15.33202 -15.21883 -14.85493 -14.73051 -14.51090 -14.42458 -14.13874 -13.97100 -13.84691 -13.65051 -13.35418 -13.22012 -13.15718 -12.85759 -12.75613 -12.75304 -12.62452 -12.53879 -12.51449 -12.37480 -12.15152 -12.01208 -11.90117 -11.88200 -11.69786 -11.65607 -11.27836 -11.15343 -10.68704 -10.37538 -10.09077 -9.64881 -9.34690 -8.51674 -7.79987 -5.04485 1.22966 1.40618 1.44356 1.50398 2.09699 2.25532 2.62218 2.90153 3.49532 3.61427 3.78489 3.85890 3.91750 3.96896 4.02795 4.14426 4.16281 4.21485 4.34275 4.36968 4.37708 4.46328 4.50929 4.51691 4.58358 4.63638 4.72504 4.75133 4.81779 4.83222 4.85055 4.88383 4.93958 4.96487 5.00117 5.01584 5.07723 5.08741 5.16354 5.17054 5.18356 5.27007 5.30565 5.38144 5.45696 5.58692 5.61356 5.65270 5.86233 5.92815 6.44530 6.48694 6.79604 7.45587 7.72466 8.26180 8.55079 9.41141 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.007627 B = 0.005839 C = 0.003564 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3670.354645 B = 4794.534187 C = 7854.814123 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.157 4.157 3 C -0.108 4.108 4 C 0.140 3.860 5 H 0.048 0.952 6 C -0.119 4.119 7 C 0.471 3.529 8 O -0.497 6.497 9 N -0.616 5.616 10 C 0.103 3.897 11 C -0.120 4.120 12 C -0.089 4.089 13 H 0.070 0.930 14 C -0.139 4.139 15 C -0.111 4.111 16 C 0.150 3.850 17 H 0.049 0.951 18 C 0.168 3.832 19 N -0.695 5.695 20 C -0.201 4.201 21 H 0.044 0.956 22 C -0.068 4.068 23 N -0.965 5.965 24 Si 0.949 3.051 25 H -0.279 1.279 26 H -0.295 1.295 27 H -0.283 1.283 28 O -0.381 6.381 29 C 0.080 3.920 30 C -0.147 4.147 31 H 0.096 0.904 32 H 0.122 0.878 33 H 0.058 0.942 34 H 0.083 0.917 35 H 0.058 0.942 36 H 0.129 0.871 37 H 0.098 0.902 38 H 0.066 0.934 39 H 0.103 0.897 40 H 0.100 0.900 41 H 0.064 0.936 42 H 0.054 0.946 43 H 0.052 0.948 44 H 0.070 0.930 45 H 0.071 0.929 46 H 0.060 0.940 47 H -0.004 1.004 48 H 0.027 0.973 49 H 0.359 0.641 50 H 0.243 0.757 51 H 0.029 0.971 52 H 0.061 0.939 53 H 0.084 0.916 54 H 0.058 0.942 55 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.518 9.347 15.733 23.359 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.157 4.157 3 C -0.165 4.165 4 C 0.082 3.918 5 H 0.067 0.933 6 C -0.159 4.159 7 C 0.258 3.742 8 O -0.369 6.369 9 N -0.354 5.354 10 C -0.019 4.019 11 C -0.158 4.158 12 C -0.107 4.107 13 H 0.088 0.912 14 C -0.197 4.197 15 C -0.150 4.150 16 C 0.046 3.954 17 H 0.067 0.933 18 C 0.042 3.958 19 N -0.335 5.335 20 C -0.334 4.334 21 H 0.062 0.938 22 C -0.260 4.260 23 N -0.617 5.617 24 Si 0.779 3.221 25 H -0.206 1.206 26 H -0.221 1.221 27 H -0.209 1.209 28 O -0.300 6.300 29 C 0.004 3.996 30 C -0.204 4.204 31 H 0.115 0.885 32 H 0.140 0.860 33 H 0.077 0.923 34 H 0.102 0.898 35 H 0.077 0.923 36 H 0.146 0.854 37 H 0.117 0.883 38 H 0.084 0.916 39 H 0.121 0.879 40 H 0.119 0.881 41 H 0.083 0.917 42 H 0.073 0.927 43 H 0.071 0.929 44 H 0.089 0.911 45 H 0.089 0.911 46 H 0.079 0.921 47 H 0.014 0.986 48 H 0.044 0.956 49 H 0.190 0.810 50 H 0.052 0.948 51 H 0.047 0.953 52 H 0.079 0.921 53 H 0.103 0.897 54 H 0.077 0.923 55 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges -14.348 8.806 15.090 22.608 hybrid contribution 0.427 -0.407 -1.487 1.599 sum -13.921 8.399 13.603 21.199 Atomic orbital electron populations 1.23911 0.94462 1.02950 0.99716 1.22275 0.95928 0.95974 1.01553 1.20724 1.00091 0.93651 1.01995 1.20831 0.90482 0.93943 0.86539 0.93350 1.21771 1.01168 0.94935 0.98026 1.21063 0.80805 0.89742 0.82601 1.91058 1.55692 1.54565 1.35566 1.48040 1.53544 1.21908 1.11881 1.21943 1.02366 0.94003 0.83548 1.21947 0.99290 0.96024 0.98534 1.21099 1.00207 0.95639 0.93782 0.91178 1.21762 1.01068 0.99539 0.97296 1.21813 1.01350 0.98083 0.93748 1.21136 0.94501 0.84473 0.95250 0.93250 1.20886 0.95846 0.92367 0.86703 1.42032 1.61914 1.24600 1.04940 1.19135 1.05388 1.18530 0.90388 0.93836 1.25314 0.96262 1.02860 1.01535 1.69904 1.15718 1.42772 1.33295 0.85591 0.76661 0.77677 0.82183 1.20585 1.22105 1.20931 1.88006 1.36479 1.88484 1.17050 1.22196 0.95296 0.97563 0.84582 1.21698 0.99123 1.01646 0.97942 0.88524 0.85983 0.92321 0.89828 0.92330 0.85358 0.88350 0.91558 0.87889 0.88142 0.91681 0.92731 0.92852 0.91109 0.91065 0.92115 0.98597 0.95566 0.80974 0.94799 0.95306 0.92070 0.89720 0.92285 0.95255 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.20 13.91 67.78 0.94 -2.26 16 2 C -0.16 -3.57 4.82 -16.49 -0.08 -3.65 16 3 C -0.11 -2.18 9.84 71.23 0.70 -1.48 16 4 C 0.14 4.27 1.87 29.85 0.06 4.33 16 5 H 0.05 1.60 7.38 -2.39 -0.02 1.58 16 6 C -0.12 -3.29 3.88 29.85 0.12 -3.17 16 7 C 0.47 17.24 7.07 87.66 0.62 17.86 16 8 O -0.50 -23.66 9.14 13.16 0.12 -23.54 16 9 N -0.62 -19.16 2.98 -795.82 -2.37 -21.53 16 10 C 0.10 2.07 6.32 86.36 0.55 2.62 16 11 C -0.12 -1.90 5.36 30.67 0.16 -1.73 16 12 C -0.09 -1.67 2.68 -10.77 -0.03 -1.70 16 13 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 14 C -0.14 -2.07 9.19 71.98 0.66 -1.41 16 15 C -0.11 -2.92 4.61 30.53 0.14 -2.78 16 16 C 0.15 5.31 2.90 44.83 0.13 5.44 16 17 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 18 C 0.17 7.87 4.87 86.38 0.42 8.29 16 19 N -0.69 -39.46 3.14 -343.44 -1.08 -40.54 16 20 C -0.20 -12.58 9.62 84.03 0.81 -11.77 16 21 H 0.04 2.76 7.84 -2.91 -0.02 2.74 16 22 C -0.07 -4.27 5.49 84.86 0.47 -3.81 16 23 N -0.96 -63.80 13.23 21.65 0.29 -63.52 16 24 Si 0.95 50.53 29.56 68.60 2.03 52.56 16 25 H -0.28 -14.39 7.11 99.48 0.71 -13.68 16 26 H -0.29 -15.59 7.11 99.48 0.71 -14.88 16 27 H -0.28 -14.57 7.11 99.48 0.71 -13.87 16 28 O -0.38 -15.02 8.93 -132.78 -1.19 -16.21 16 29 C 0.08 2.95 6.47 71.98 0.47 3.42 16 30 C -0.15 -5.82 10.28 71.98 0.74 -5.08 16 31 H 0.10 1.77 7.84 -2.91 -0.02 1.75 16 32 H 0.12 1.69 8.04 -2.92 -0.02 1.67 16 33 H 0.06 1.28 8.14 -2.38 -0.02 1.26 16 34 H 0.08 1.23 8.06 -2.39 -0.02 1.21 16 35 H 0.06 1.26 7.02 -2.38 -0.02 1.24 16 36 H 0.13 2.47 7.04 -2.39 -0.02 2.46 16 37 H 0.10 2.66 7.20 -2.39 -0.02 2.64 16 38 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 39 H 0.10 1.57 5.77 -2.38 -0.01 1.56 16 40 H 0.10 1.05 8.14 -2.39 -0.02 1.03 16 41 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 42 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 43 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 44 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 45 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 46 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 47 H 0.00 -0.17 8.12 -2.38 -0.02 -0.19 16 48 H 0.03 1.33 6.24 -2.39 -0.01 1.31 16 49 H 0.36 21.88 7.52 -92.71 -0.70 21.18 16 50 H 0.24 15.67 8.32 -92.71 -0.77 14.90 16 51 H 0.03 1.13 7.97 -2.39 -0.02 1.11 16 52 H 0.06 1.85 8.03 -2.39 -0.02 1.83 16 53 H 0.08 2.79 8.14 -2.39 -0.02 2.77 16 54 H 0.06 2.24 8.14 -2.39 -0.02 2.22 16 55 H 0.03 1.44 8.14 -2.38 -0.02 1.42 16 Total: -1.00 -79.79 423.88 4.81 -74.98 By element: Atomic # 1 Polarization: 34.54 SS G_CDS: 0.14 Total: 34.68 kcal Atomic # 6 Polarization: -3.77 SS G_CDS: 6.87 Total: 3.10 kcal Atomic # 7 Polarization: -122.42 SS G_CDS: -3.16 Total: -125.58 kcal Atomic # 8 Polarization: -38.68 SS G_CDS: -1.07 Total: -39.74 kcal Atomic # 14 Polarization: 50.53 SS G_CDS: 2.03 Total: 52.56 kcal Total: -79.79 4.81 -74.98 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001656546345.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.286 kcal (2) G-P(sol) polarization free energy of solvation -79.785 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.500 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.807 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.978 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.692 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds