Wall clock time and date at job start Tue Mar 31 2020 22:01:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42895 * 109.47478 * 2 1 4 4 C 1.42898 * 114.00516 * 187.17358 * 3 2 1 5 5 H 1.09002 * 109.46728 * 17.71958 * 4 3 2 6 6 C 1.52998 * 109.46971 * 137.71483 * 4 3 2 7 7 C 1.50699 * 109.47585 * 295.00423 * 6 4 3 8 8 O 1.21277 * 119.99475 * 359.97438 * 7 6 4 9 9 N 1.34776 * 120.00021 * 180.02562 * 7 6 4 10 10 C 1.47763 * 125.81642 * 179.71437 * 9 7 6 11 11 C 1.56195 * 104.00302 * 154.05908 * 10 9 7 12 12 H 1.09003 * 113.91182 * 161.26078 * 11 10 9 13 13 C 1.52880 * 106.67782 * 286.46266 * 11 10 9 14 14 C 1.51591 * 111.55955 * 168.35526 * 13 11 10 15 15 N 1.44325 * 113.11557 * 320.91373 * 14 13 11 16 16 C 1.36937 * 116.35926 * 187.26080 * 15 14 13 17 17 H 1.07995 * 120.00183 * 142.66417 * 16 15 14 18 18 C 1.38813 * 119.99931 * 322.66404 * 16 15 14 19 19 N 1.31623 * 119.99596 * 344.73914 * 18 16 15 20 20 Si 1.86800 * 120.00018 * 164.74001 * 18 16 15 21 21 H 1.48493 * 109.46888 * 60.00080 * 20 18 16 22 22 H 1.48502 * 109.46981 * 179.97438 * 20 18 16 23 23 H 1.48499 * 109.47099 * 299.99749 * 20 18 16 24 24 C 1.44000 * 127.29070 * 7.27665 * 15 14 13 25 25 C 1.49959 * 116.09352 * 2.49048 * 24 15 14 26 26 H 1.08998 * 108.82740 * 141.04384 * 25 24 15 27 27 C 1.47615 * 125.81877 * 0.02562 * 9 7 6 28 28 C 1.52994 * 109.47157 * 257.72067 * 4 3 2 29 29 C 1.52990 * 109.47565 * 55.43283 * 28 4 3 30 30 C 1.53002 * 109.47043 * 175.43728 * 28 4 3 31 31 H 1.08997 * 109.47470 * 60.00002 * 1 2 3 32 32 H 1.09005 * 109.47276 * 179.97438 * 1 2 3 33 33 H 1.09004 * 109.47259 * 299.99417 * 1 2 3 34 34 H 1.09004 * 109.47050 * 239.99826 * 2 1 3 35 35 H 1.09006 * 109.47090 * 120.00439 * 2 1 3 36 36 H 1.09001 * 109.47205 * 55.00679 * 6 4 3 37 37 H 1.09007 * 109.46895 * 174.99963 * 6 4 3 38 38 H 1.08998 * 110.49882 * 272.80128 * 10 9 7 39 39 H 1.09004 * 110.49805 * 35.48108 * 10 9 7 40 40 H 1.09003 * 109.06269 * 47.81045 * 13 11 10 41 41 H 1.08999 * 109.05405 * 288.88669 * 13 11 10 42 42 H 1.09003 * 108.75822 * 199.97597 * 14 13 11 43 43 H 1.09004 * 108.66446 * 81.78522 * 14 13 11 44 44 H 0.97006 * 119.99686 * 179.97438 * 19 18 16 45 45 H 1.08997 * 108.16226 * 240.76806 * 24 15 14 46 46 H 1.08999 * 108.15559 * 124.19925 * 24 15 14 47 47 H 1.08998 * 110.08338 * 299.82067 * 27 9 7 48 48 H 1.08994 * 110.08312 * 61.38466 * 27 9 7 49 49 H 1.09004 * 109.46848 * 295.43087 * 28 4 3 50 50 H 1.08999 * 109.46986 * 54.31903 * 29 28 4 51 51 H 1.09003 * 109.47402 * 174.32212 * 29 28 4 52 52 H 1.09005 * 109.47467 * 294.32432 * 29 28 4 53 53 H 1.09002 * 109.47231 * 60.00031 * 30 28 4 54 54 H 1.08999 * 109.46920 * 179.97438 * 30 28 4 55 55 H 1.08998 * 109.46657 * 299.99816 * 30 28 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4213 1.4635 -0.1630 5 1 3.8185 0.5312 -0.5645 6 6 3.7308 2.6081 -1.1299 7 6 3.1984 2.2679 -2.4981 8 8 2.6280 1.2135 -2.6818 9 7 3.3572 3.1349 -3.5177 10 6 2.8940 2.9313 -4.9060 11 6 2.7023 4.3803 -5.4568 12 1 2.6757 4.4393 -6.5449 13 6 1.4379 4.9354 -4.8008 14 6 1.2988 6.4270 -5.0330 15 7 2.5556 7.1322 -4.9552 16 6 2.4896 8.4992 -5.0011 17 1 3.1596 9.0927 -4.3969 18 6 1.5615 9.1220 -5.8243 19 7 0.9581 8.4365 -6.7722 20 14 1.1689 10.9327 -5.5867 21 1 2.4051 11.7351 -5.7685 22 1 0.1543 11.3545 -6.5856 23 1 0.6357 11.1481 -4.2176 24 6 3.8714 6.5595 -4.8351 25 6 3.9421 5.0616 -4.8440 26 1 4.8182 4.7542 -5.4149 27 6 4.0290 4.4470 -3.4393 28 6 4.0688 1.7518 1.1928 29 6 3.6657 0.6656 2.1919 30 6 5.5910 1.7635 1.0387 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3634 -1.0277 -0.0005 33 1 -0.3634 0.5138 0.8901 34 1 1.8933 -0.5139 -0.8900 35 1 1.8933 -0.5139 0.8900 36 1 3.2579 3.5230 -0.7732 37 1 4.8095 2.7547 -1.1858 38 1 3.6470 2.3968 -5.4851 39 1 1.9476 2.3906 -4.9172 40 1 1.4799 4.7443 -3.7285 41 1 0.5683 4.4275 -5.2178 42 1 0.6203 6.8364 -4.2845 43 1 0.8675 6.5874 -6.0211 44 1 0.3092 8.8717 -7.3472 45 1 4.3128 6.9147 -3.9040 46 1 4.4808 6.9330 -5.6580 47 1 3.5187 5.0863 -2.7189 48 1 5.0722 4.3167 -3.1517 49 1 3.7330 2.7229 1.5566 50 1 3.9110 -0.3142 1.7821 51 1 4.2055 0.8138 3.1272 52 1 2.5932 0.7232 2.3783 53 1 5.8783 2.5375 0.3270 54 1 6.0524 1.9694 2.0046 55 1 5.9268 0.7925 0.6748 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001656814319.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:01:11 Heat of formation + Delta-G solvation = -87.924246 kcal Electronic energy + Delta-G solvation = -31551.923934 eV Core-core repulsion = 27588.293567 eV Total energy + Delta-G solvation = -3963.630367 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.62775 -40.27579 -38.98840 -37.17200 -36.03211 -34.21195 -33.15369 -32.55783 -32.02604 -30.97872 -29.17513 -27.86101 -27.12583 -25.76075 -24.56263 -23.64416 -23.43595 -22.85029 -21.03589 -20.22533 -19.40823 -18.85299 -18.01838 -17.98445 -17.17399 -16.90911 -16.71726 -16.45286 -15.86162 -15.58214 -15.42042 -15.18222 -15.07761 -14.69491 -14.64592 -14.42005 -14.14831 -13.86437 -13.71923 -13.66080 -13.36189 -13.24410 -13.02101 -12.96625 -12.92712 -12.88646 -12.81014 -12.59310 -12.53648 -12.23803 -12.12271 -12.09050 -11.89889 -11.77588 -11.62849 -11.49913 -11.46047 -11.26872 -11.16067 -10.79934 -10.56616 -10.26907 -9.61158 -8.53721 -7.62656 -5.51998 1.46601 1.49136 1.55498 1.67238 1.99238 2.50816 2.80093 3.25585 3.34199 3.53021 3.71268 3.76070 3.77950 3.86521 4.03297 4.12173 4.18109 4.22817 4.26922 4.35697 4.38608 4.45999 4.48830 4.50335 4.54558 4.56478 4.66913 4.69194 4.73430 4.79073 4.83013 4.85620 4.91923 4.93583 5.01300 5.02213 5.05471 5.07783 5.08692 5.11129 5.22420 5.23427 5.27612 5.32321 5.37691 5.42916 5.43121 5.45950 5.67456 5.97051 6.40291 6.50787 6.55479 7.18342 7.25985 8.06264 8.28430 9.13651 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.015626 B = 0.002657 C = 0.002614 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1791.431528 B =10537.311814 C =10707.660015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.062 3.938 3 O -0.395 6.395 4 C 0.112 3.888 5 H 0.060 0.940 6 C -0.139 4.139 7 C 0.527 3.473 8 O -0.576 6.576 9 N -0.618 5.618 10 C 0.117 3.883 11 C -0.081 4.081 12 H 0.096 0.904 13 C -0.106 4.106 14 C 0.164 3.836 15 N -0.597 5.597 16 C -0.287 4.287 17 H 0.060 0.940 18 C -0.038 4.038 19 N -0.919 5.919 20 Si 0.964 3.036 21 H -0.271 1.271 22 H -0.293 1.293 23 H -0.281 1.281 24 C 0.175 3.825 25 C -0.095 4.095 26 H 0.101 0.899 27 C 0.117 3.883 28 C -0.110 4.110 29 C -0.145 4.145 30 C -0.147 4.147 31 H 0.040 0.960 32 H 0.086 0.914 33 H 0.063 0.937 34 H 0.037 0.963 35 H 0.062 0.938 36 H 0.100 0.900 37 H 0.133 0.867 38 H 0.084 0.916 39 H 0.063 0.937 40 H 0.046 0.954 41 H 0.058 0.942 42 H -0.017 1.017 43 H 0.049 0.951 44 H 0.250 0.750 45 H 0.022 0.978 46 H 0.011 0.989 47 H 0.061 0.939 48 H 0.103 0.897 49 H 0.075 0.925 50 H 0.053 0.947 51 H 0.068 0.932 52 H 0.050 0.950 53 H 0.065 0.935 54 H 0.069 0.931 55 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.223 -16.920 14.309 24.002 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.015 4.015 3 O -0.314 6.314 4 C 0.053 3.947 5 H 0.079 0.921 6 C -0.178 4.178 7 C 0.317 3.683 8 O -0.456 6.456 9 N -0.352 5.352 10 C -0.006 4.006 11 C -0.100 4.100 12 H 0.115 0.885 13 C -0.144 4.144 14 C 0.038 3.962 15 N -0.321 5.321 16 C -0.418 4.418 17 H 0.077 0.923 18 C -0.235 4.235 19 N -0.563 5.563 20 Si 0.791 3.209 21 H -0.196 1.196 22 H -0.219 1.219 23 H -0.207 1.207 24 C 0.049 3.951 25 C -0.115 4.115 26 H 0.119 0.881 27 C -0.005 4.005 28 C -0.129 4.129 29 C -0.202 4.202 30 C -0.205 4.205 31 H 0.059 0.941 32 H 0.105 0.895 33 H 0.082 0.918 34 H 0.056 0.944 35 H 0.080 0.920 36 H 0.119 0.881 37 H 0.151 0.849 38 H 0.102 0.898 39 H 0.081 0.919 40 H 0.065 0.935 41 H 0.076 0.924 42 H 0.001 0.999 43 H 0.066 0.934 44 H 0.060 0.940 45 H 0.040 0.960 46 H 0.029 0.971 47 H 0.080 0.920 48 H 0.121 0.879 49 H 0.093 0.907 50 H 0.072 0.928 51 H 0.087 0.913 52 H 0.070 0.930 53 H 0.084 0.916 54 H 0.088 0.912 55 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 8.700 -17.412 14.201 24.094 hybrid contribution -0.723 1.137 -0.411 1.409 sum 7.977 -16.275 13.790 22.774 Atomic orbital electron populations 1.21728 0.93934 1.02871 1.01926 1.22567 0.95556 0.83462 0.99875 1.87837 1.22332 1.27484 1.93782 1.21927 0.81559 0.97129 0.94056 0.92149 1.22051 1.04343 1.01252 0.90142 1.20739 0.78743 0.82596 0.86181 1.90639 1.44555 1.25867 1.84559 1.48795 1.57503 1.19199 1.09695 1.22537 0.99861 0.96202 0.81981 1.22197 0.94597 0.93285 0.99903 0.88542 1.21373 0.97790 0.95687 0.99549 1.19967 0.86962 0.89453 0.99798 1.42770 1.00769 1.02908 1.85682 1.19371 1.19400 0.83808 1.19177 0.92252 1.26019 1.00768 1.01719 0.95030 1.70040 1.30113 1.36838 1.19343 0.85413 0.77751 0.80631 0.77063 1.19638 1.21880 1.20684 1.19454 0.86281 0.91375 0.97973 1.21439 0.99330 0.94514 0.96169 0.88112 1.22158 0.98350 0.82614 0.97368 1.21543 0.96587 1.00511 0.94227 1.21829 1.01381 0.97971 0.98998 1.21894 0.93190 1.02438 1.02931 0.94105 0.89476 0.91826 0.94431 0.91953 0.88130 0.84928 0.89776 0.91852 0.93505 0.92359 0.99874 0.93396 0.94040 0.95979 0.97099 0.92047 0.87885 0.90691 0.92760 0.91308 0.93047 0.91561 0.91195 0.92359 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.10 10.28 71.98 0.74 -2.36 16 2 C 0.06 1.40 5.84 71.98 0.42 1.82 16 3 O -0.39 -10.33 8.76 -135.20 -1.18 -11.51 16 4 C 0.11 2.34 1.40 30.59 0.04 2.39 16 5 H 0.06 1.34 7.38 -2.39 -0.02 1.32 16 6 C -0.14 -2.89 4.48 29.85 0.13 -2.76 16 7 C 0.53 14.88 7.74 87.66 0.68 15.56 16 8 O -0.58 -19.99 15.00 10.76 0.16 -19.83 16 9 N -0.62 -16.75 2.80 -808.29 -2.27 -19.01 16 10 C 0.12 3.25 6.25 87.25 0.55 3.80 16 11 C -0.08 -2.58 3.77 -9.33 -0.04 -2.61 16 12 H 0.10 3.19 8.14 -2.39 -0.02 3.17 16 13 C -0.11 -4.08 4.98 30.09 0.15 -3.93 16 14 C 0.16 8.03 5.35 86.32 0.46 8.49 16 15 N -0.60 -29.56 3.18 -722.08 -2.30 -31.86 16 16 C -0.29 -15.74 9.20 84.03 0.77 -14.97 16 17 H 0.06 3.19 7.87 -2.91 -0.02 3.17 16 18 C -0.04 -2.12 5.11 84.86 0.43 -1.68 16 19 N -0.92 -53.86 10.92 21.65 0.24 -53.63 16 20 Si 0.96 44.63 29.58 68.60 2.03 46.65 16 21 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 22 H -0.29 -13.57 7.11 99.48 0.71 -12.86 16 23 H -0.28 -12.78 7.11 99.48 0.71 -12.08 16 24 C 0.17 6.84 5.67 85.87 0.49 7.33 16 25 C -0.10 -2.82 2.68 -11.18 -0.03 -2.85 16 26 H 0.10 2.48 8.14 -2.39 -0.02 2.46 16 27 C 0.12 2.90 5.19 86.36 0.45 3.35 16 28 C -0.11 -1.72 2.70 -10.80 -0.03 -1.75 16 29 C -0.14 -2.08 7.81 71.98 0.56 -1.51 16 30 C -0.15 -1.69 8.95 71.98 0.64 -1.05 16 31 H 0.04 1.03 8.14 -2.39 -0.02 1.01 16 32 H 0.09 1.41 8.14 -2.38 -0.02 1.39 16 33 H 0.06 1.25 8.14 -2.38 -0.02 1.23 16 34 H 0.04 0.97 7.47 -2.38 -0.02 0.95 16 35 H 0.06 1.14 6.11 -2.38 -0.01 1.12 16 36 H 0.10 2.16 8.14 -2.39 -0.02 2.14 16 37 H 0.13 1.93 6.33 -2.38 -0.02 1.92 16 38 H 0.08 2.02 8.14 -2.39 -0.02 2.01 16 39 H 0.06 1.95 7.93 -2.38 -0.02 1.93 16 40 H 0.05 1.80 6.77 -2.39 -0.02 1.78 16 41 H 0.06 2.16 8.14 -2.39 -0.02 2.14 16 42 H -0.02 -0.91 8.12 -2.39 -0.02 -0.93 16 43 H 0.05 2.72 5.68 -2.38 -0.01 2.70 16 44 H 0.25 14.21 8.31 -92.70 -0.77 13.44 16 45 H 0.02 0.83 7.78 -2.39 -0.02 0.82 16 46 H 0.01 0.46 8.14 -2.39 -0.02 0.44 16 47 H 0.06 1.70 7.83 -2.39 -0.02 1.68 16 48 H 0.10 1.83 8.14 -2.39 -0.02 1.81 16 49 H 0.07 1.25 8.14 -2.38 -0.02 1.23 16 50 H 0.05 0.74 7.88 -2.39 -0.02 0.72 16 51 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 52 H 0.05 0.85 6.93 -2.38 -0.02 0.83 16 53 H 0.07 0.68 6.45 -2.39 -0.02 0.66 16 54 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 55 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 Total: -1.00 -68.88 411.79 3.94 -64.94 By element: Atomic # 1 Polarization: 16.15 SS G_CDS: 0.83 Total: 16.98 kcal Atomic # 6 Polarization: 0.83 SS G_CDS: 6.43 Total: 7.26 kcal Atomic # 7 Polarization: -100.17 SS G_CDS: -4.32 Total: -104.50 kcal Atomic # 8 Polarization: -30.31 SS G_CDS: -1.02 Total: -31.34 kcal Atomic # 14 Polarization: 44.63 SS G_CDS: 2.03 Total: 46.65 kcal Total: -68.88 3.94 -64.94 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001656814319.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.983 kcal (2) G-P(sol) polarization free energy of solvation -68.882 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.865 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.941 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.941 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.924 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds