Wall clock time and date at job start Tue Mar 31 2020 22:19:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42900 * 113.99915 * 2 1 4 4 C 1.53002 * 109.46839 * 210.00036 * 3 2 1 5 5 C 1.53002 * 109.47112 * 180.02562 * 4 3 2 6 6 C 1.52993 * 109.47347 * 59.99779 * 5 4 3 7 7 C 1.50707 * 109.46958 * 59.99983 * 6 5 4 8 8 O 1.21275 * 120.00101 * 350.34905 * 7 6 5 9 9 N 1.34782 * 119.99677 * 170.35119 * 7 6 5 10 10 C 1.46918 * 120.63291 * 5.28657 * 9 7 6 11 11 C 1.53193 * 108.77553 * 126.37103 * 10 9 7 12 12 C 1.53033 * 109.31204 * 54.63574 * 11 10 9 13 13 C 1.53072 * 109.65663 * 298.69674 * 12 11 10 14 14 C 1.46926 * 120.62788 * 185.26471 * 9 7 6 15 15 H 1.08998 * 109.58869 * 113.69762 * 14 9 7 16 16 C 1.53006 * 109.58522 * 353.41625 * 14 9 7 17 17 N 1.46502 * 109.46581 * 179.05615 * 16 14 9 18 18 C 1.46499 * 120.00035 * 275.56965 * 17 16 14 19 19 C 1.36935 * 119.99727 * 95.57924 * 17 16 14 20 20 H 1.08003 * 120.00632 * 37.01040 * 19 17 16 21 21 C 1.38810 * 120.00014 * 217.01388 * 19 17 16 22 22 N 1.31618 * 120.00658 * 190.04395 * 21 19 17 23 23 Si 1.86806 * 119.99861 * 10.04244 * 21 19 17 24 24 H 1.48497 * 109.47042 * 266.02770 * 23 21 19 25 25 H 1.48500 * 109.46881 * 26.02608 * 23 21 19 26 26 H 1.48498 * 109.47110 * 146.02127 * 23 21 19 27 27 C 1.53002 * 109.47195 * 300.00170 * 6 5 4 28 28 C 1.52993 * 109.47459 * 89.99914 * 3 2 1 29 29 H 1.08997 * 109.47295 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.47220 * 300.00183 * 1 2 3 31 31 H 1.09000 * 109.47061 * 60.00210 * 1 2 3 32 32 H 1.08994 * 109.47359 * 329.99273 * 3 2 1 33 33 H 1.09001 * 109.47541 * 59.99836 * 4 3 2 34 34 H 1.09001 * 109.47166 * 299.99836 * 4 3 2 35 35 H 1.09001 * 109.46947 * 299.99940 * 5 4 3 36 36 H 1.09002 * 109.46703 * 180.02562 * 5 4 3 37 37 H 1.08998 * 109.47477 * 179.97438 * 6 5 4 38 38 H 1.09003 * 109.58553 * 246.16110 * 10 9 7 39 39 H 1.09006 * 109.58804 * 6.58194 * 10 9 7 40 40 H 1.08999 * 109.49723 * 174.59081 * 11 10 9 41 41 H 1.09005 * 109.49553 * 294.67896 * 11 10 9 42 42 H 1.08993 * 109.46474 * 58.65598 * 12 11 10 43 43 H 1.08998 * 109.46043 * 178.63065 * 12 11 10 44 44 H 1.08997 * 109.39281 * 301.27782 * 13 12 11 45 45 H 1.09003 * 109.62182 * 181.17184 * 13 12 11 46 46 H 1.09004 * 109.46754 * 59.06140 * 16 14 9 47 47 H 1.08998 * 109.46993 * 299.05784 * 16 14 9 48 48 H 1.09007 * 109.46626 * 176.64450 * 18 17 16 49 49 H 1.09000 * 109.47128 * 296.64052 * 18 17 16 50 50 H 1.08994 * 109.47386 * 56.64782 * 18 17 16 51 51 H 0.96996 * 120.00338 * 180.02562 * 22 21 19 52 52 H 1.08996 * 109.47324 * 179.97438 * 27 6 5 53 53 H 1.08995 * 109.46969 * 300.00259 * 27 6 5 54 54 H 1.08997 * 109.47303 * 299.99999 * 28 3 2 55 55 H 1.09001 * 109.46966 * 59.99906 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.3589 1.2632 -0.7213 5 6 3.9815 2.6608 -0.7208 6 6 4.1890 3.1262 0.7218 7 6 5.1086 2.1663 1.4319 8 8 5.4141 1.1174 0.9054 9 7 5.5914 2.4736 2.6522 10 6 5.1411 3.6841 3.3524 11 6 4.6392 3.2903 4.7451 12 6 5.7352 2.5121 5.4767 13 6 6.0632 1.2332 4.7020 14 6 6.5779 1.6041 3.3077 15 1 7.5276 2.1313 3.3969 16 6 6.7728 0.3332 2.4781 17 7 7.7732 -0.5215 3.1222 18 6 9.1992 -0.2949 2.8740 19 6 7.3754 -1.5323 3.9559 20 1 6.4844 -2.0995 3.7303 21 6 8.1174 -1.8281 5.0912 22 7 7.8552 -2.9161 5.7839 23 14 9.4881 -0.6819 5.6360 24 1 10.7797 -1.1528 5.0746 25 1 9.2077 0.6922 5.1476 26 1 9.5664 -0.6737 7.1189 27 6 2.8404 3.1684 1.4431 28 6 2.2176 1.7714 1.4424 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3634 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.3451 1.9993 -0.5139 33 1 3.2111 0.9312 -1.7490 34 1 4.0241 0.5693 -0.2074 35 1 3.3164 3.3550 -1.2343 36 1 4.9421 2.6307 -1.2350 37 1 4.6330 4.1216 0.7222 38 1 5.9730 4.3820 3.4476 39 1 4.3319 4.1514 2.7910 40 1 4.3919 4.1889 5.3103 41 1 3.7515 2.6650 4.6486 42 1 6.6306 3.1289 5.5511 43 1 5.3895 2.2516 6.4771 44 1 5.1629 0.6261 4.6080 45 1 6.8291 0.6691 5.2343 46 1 7.1134 0.6010 1.4779 47 1 5.8268 -0.2037 2.4083 48 1 9.7874 -0.9838 3.4804 49 1 9.4157 -0.4637 1.8192 50 1 9.4554 0.7310 3.1380 51 1 8.3734 -3.1226 6.5774 52 1 2.9882 3.4995 2.4710 53 1 2.1753 3.8626 0.9295 54 1 1.2569 1.8015 1.9563 55 1 2.8829 1.0775 1.9563 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001657071384.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:19:08 Heat of formation + Delta-G solvation = -65.208375 kcal Electronic energy + Delta-G solvation = -33185.090435 eV Core-core repulsion = 29222.445102 eV Total energy + Delta-G solvation = -3962.645333 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.06549 -39.88797 -38.51399 -37.55426 -36.86625 -33.99184 -33.88368 -32.47006 -31.60949 -30.89728 -28.49206 -27.88260 -27.38622 -25.91152 -24.43591 -23.64840 -23.50794 -22.18136 -21.97337 -21.08900 -19.42219 -18.87984 -17.81982 -17.50900 -17.23846 -17.01215 -16.57665 -16.23585 -16.04126 -15.68511 -15.42219 -15.37209 -15.19311 -15.00537 -14.62957 -14.49269 -14.32487 -14.18443 -14.13953 -13.79485 -13.70228 -13.34645 -13.23589 -13.18009 -12.92548 -12.75321 -12.50785 -12.43415 -12.17321 -12.04783 -12.01131 -11.90545 -11.79253 -11.67211 -11.61435 -11.46207 -11.41079 -11.27246 -11.20052 -10.83537 -10.33929 -9.86693 -9.36605 -8.73795 -8.15888 -5.61730 1.28294 1.36798 1.48690 1.79887 2.09672 2.39907 2.89295 3.13239 3.41075 3.57613 3.74120 3.83101 3.90533 3.95185 4.04123 4.09535 4.17331 4.18835 4.29111 4.37798 4.39551 4.45748 4.46596 4.48678 4.52487 4.54603 4.63062 4.64395 4.66324 4.74489 4.77343 4.82324 4.85071 4.88525 4.90644 5.01232 5.06033 5.09266 5.11331 5.13357 5.21934 5.25726 5.28632 5.33029 5.35326 5.41470 5.54121 5.63984 5.79895 5.93928 6.13898 6.40553 6.65443 6.95735 7.41657 7.63419 8.03421 9.04363 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.013533 B = 0.004033 C = 0.003714 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2068.498041 B = 6941.889147 C = 7536.670599 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.423 6.423 3 C 0.093 3.907 4 C -0.140 4.140 5 C -0.086 4.086 6 C -0.103 4.103 7 C 0.504 3.496 8 O -0.562 6.562 9 N -0.606 5.606 10 C 0.093 3.907 11 C -0.127 4.127 12 C -0.119 4.119 13 C -0.114 4.114 14 C 0.136 3.864 15 H 0.061 0.939 16 C 0.182 3.818 17 N -0.628 5.628 18 C 0.103 3.897 19 C -0.242 4.242 20 H 0.026 0.974 21 C -0.027 4.027 22 N -0.965 5.965 23 Si 0.958 3.042 24 H -0.281 1.281 25 H -0.242 1.242 26 H -0.310 1.310 27 C -0.108 4.108 28 C -0.141 4.141 29 H 0.084 0.916 30 H 0.048 0.952 31 H 0.058 0.942 32 H 0.084 0.916 33 H 0.057 0.943 34 H 0.068 0.932 35 H 0.102 0.898 36 H 0.061 0.939 37 H 0.131 0.869 38 H 0.083 0.917 39 H 0.125 0.875 40 H 0.108 0.892 41 H 0.055 0.945 42 H 0.068 0.932 43 H 0.060 0.940 44 H 0.029 0.971 45 H 0.051 0.949 46 H 0.061 0.939 47 H 0.028 0.972 48 H 0.042 0.958 49 H 0.034 0.966 50 H 0.040 0.960 51 H 0.262 0.738 52 H 0.091 0.909 53 H 0.113 0.887 54 H 0.073 0.927 55 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.313 24.258 -9.726 29.331 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.342 6.342 3 C 0.036 3.964 4 C -0.178 4.178 5 C -0.123 4.123 6 C -0.124 4.124 7 C 0.294 3.706 8 O -0.441 6.441 9 N -0.340 5.340 10 C -0.028 4.028 11 C -0.165 4.165 12 C -0.157 4.157 13 C -0.152 4.152 14 C 0.030 3.970 15 H 0.079 0.921 16 C 0.057 3.943 17 N -0.354 5.354 18 C -0.041 4.041 19 C -0.372 4.372 20 H 0.044 0.956 21 C -0.222 4.222 22 N -0.611 5.611 23 Si 0.786 3.214 24 H -0.208 1.208 25 H -0.166 1.166 26 H -0.240 1.240 27 C -0.145 4.145 28 C -0.179 4.179 29 H 0.103 0.897 30 H 0.067 0.933 31 H 0.076 0.924 32 H 0.102 0.898 33 H 0.076 0.924 34 H 0.086 0.914 35 H 0.120 0.880 36 H 0.080 0.920 37 H 0.148 0.852 38 H 0.102 0.898 39 H 0.143 0.857 40 H 0.126 0.874 41 H 0.074 0.926 42 H 0.087 0.913 43 H 0.079 0.921 44 H 0.048 0.952 45 H 0.069 0.931 46 H 0.079 0.921 47 H 0.046 0.954 48 H 0.060 0.940 49 H 0.052 0.948 50 H 0.058 0.942 51 H 0.071 0.929 52 H 0.109 0.891 53 H 0.131 0.869 54 H 0.092 0.908 55 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges -13.009 23.471 -9.914 28.608 hybrid contribution 0.701 -0.992 0.868 1.493 sum -12.307 22.479 -9.046 27.177 Atomic orbital electron populations 1.22928 0.79917 1.03278 1.00902 1.87956 1.21288 1.29792 1.95203 1.22247 0.94868 0.83834 0.95415 1.21927 0.95962 0.99805 1.00076 1.21266 1.01404 0.95367 0.94300 1.21506 0.95580 0.99475 0.95842 1.21454 0.80731 0.87524 0.80909 1.90679 1.59486 1.26671 1.67231 1.48425 1.42653 1.25438 1.17458 1.22310 1.01549 0.85707 0.93283 1.21896 0.97413 1.01182 0.95963 1.21566 0.99814 0.95607 0.98714 1.21717 0.99915 0.97670 0.95914 1.21760 0.90292 0.91650 0.93266 0.92129 1.21339 0.90964 0.88920 0.93082 1.44522 1.01790 1.34958 1.54157 1.21455 0.84941 0.98615 0.99067 1.18559 1.10040 1.07629 1.00947 0.95607 1.26143 1.01889 0.98429 0.95712 1.69928 1.44121 1.27226 1.19810 0.85765 0.78920 0.81496 0.75180 1.20799 1.16576 1.23961 1.21754 0.94260 0.96246 1.02197 1.22001 1.01000 0.97709 0.97207 0.89706 0.93293 0.92372 0.89776 0.92417 0.91406 0.87952 0.91980 0.85155 0.89841 0.85745 0.87403 0.92576 0.91325 0.92082 0.95164 0.93075 0.92117 0.95382 0.93980 0.94776 0.94190 0.92939 0.89078 0.86918 0.90813 0.95504 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.49 10.82 113.37 1.23 1.71 16 2 O -0.42 -12.08 10.35 -148.98 -1.54 -13.62 16 3 C 0.09 2.13 2.61 30.59 0.08 2.21 16 4 C -0.14 -3.65 5.29 30.60 0.16 -3.48 16 5 C -0.09 -1.56 5.17 30.59 0.16 -1.40 16 6 C -0.10 -1.77 2.17 -11.54 -0.03 -1.79 16 7 C 0.50 14.50 5.52 87.66 0.48 14.98 16 8 O -0.56 -21.78 8.76 -3.01 -0.03 -21.80 16 9 N -0.61 -16.95 2.97 -795.02 -2.36 -19.32 16 10 C 0.09 1.59 5.61 86.36 0.48 2.08 16 11 C -0.13 -2.41 6.04 30.67 0.19 -2.22 16 12 C -0.12 -3.30 5.88 30.63 0.18 -3.12 16 13 C -0.11 -4.49 4.72 30.68 0.14 -4.34 16 14 C 0.14 5.09 3.18 44.98 0.14 5.24 16 15 H 0.06 2.25 8.13 -2.39 -0.02 2.23 16 16 C 0.18 8.45 3.62 86.38 0.31 8.76 16 17 N -0.63 -32.68 2.30 -726.92 -1.67 -34.35 16 18 C 0.10 4.73 8.48 127.77 1.08 5.81 16 19 C -0.24 -14.81 8.56 84.03 0.72 -14.09 16 20 H 0.03 1.83 8.06 -2.91 -0.02 1.81 16 21 C -0.03 -1.67 5.23 84.86 0.44 -1.22 16 22 N -0.97 -63.45 13.97 21.65 0.30 -63.15 16 23 Si 0.96 47.88 23.14 68.60 1.59 49.47 16 24 H -0.28 -13.50 6.81 99.48 0.68 -12.83 16 25 H -0.24 -11.05 6.18 99.48 0.61 -10.44 16 26 H -0.31 -15.64 7.11 99.48 0.71 -14.94 16 27 C -0.11 -1.46 5.03 30.58 0.15 -1.31 16 28 C -0.14 -3.12 5.32 30.58 0.16 -2.95 16 29 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 30 H 0.05 0.80 7.87 -2.39 -0.02 0.78 16 31 H 0.06 0.84 8.08 -2.39 -0.02 0.82 16 32 H 0.08 1.36 7.79 -2.39 -0.02 1.34 16 33 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 34 H 0.07 2.48 5.18 -2.39 -0.01 2.47 16 35 H 0.10 1.12 8.14 -2.39 -0.02 1.10 16 36 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 37 H 0.13 1.34 7.68 -2.39 -0.02 1.32 16 38 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 39 H 0.12 1.28 3.99 -2.38 -0.01 1.27 16 40 H 0.11 1.30 8.14 -2.39 -0.02 1.28 16 41 H 0.06 1.20 8.14 -2.38 -0.02 1.18 16 42 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 43 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 44 H 0.03 1.34 8.14 -2.39 -0.02 1.32 16 45 H 0.05 2.42 5.50 -2.39 -0.01 2.41 16 46 H 0.06 2.82 6.34 -2.39 -0.02 2.81 16 47 H 0.03 1.50 6.96 -2.39 -0.02 1.48 16 48 H 0.04 2.04 4.15 -2.38 -0.01 2.03 16 49 H 0.03 1.44 8.14 -2.39 -0.02 1.42 16 50 H 0.04 1.63 7.22 -2.39 -0.02 1.61 16 51 H 0.26 16.24 8.31 -92.71 -0.77 15.47 16 52 H 0.09 1.05 5.29 -2.39 -0.01 1.04 16 53 H 0.11 0.76 8.14 -2.39 -0.02 0.74 16 54 H 0.07 1.41 7.87 -2.39 -0.02 1.39 16 55 H 0.03 0.86 7.21 -2.39 -0.02 0.84 16 Total: -1.00 -82.35 388.19 3.12 -79.23 By element: Atomic # 1 Polarization: 17.95 SS G_CDS: 0.73 Total: 18.69 kcal Atomic # 6 Polarization: -1.25 SS G_CDS: 6.10 Total: 4.85 kcal Atomic # 7 Polarization: -113.08 SS G_CDS: -3.74 Total: -116.82 kcal Atomic # 8 Polarization: -33.85 SS G_CDS: -1.57 Total: -35.42 kcal Atomic # 14 Polarization: 47.88 SS G_CDS: 1.59 Total: 49.47 kcal Total: -82.35 3.12 -79.23 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001657071384.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.024 kcal (2) G-P(sol) polarization free energy of solvation -82.349 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.325 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.117 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.232 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.208 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds