Wall clock time and date at job start Tue Mar 31 2020 23:01:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42908 * 113.99734 * 2 1 4 4 H 1.09004 * 109.46492 * 356.46109 * 3 2 1 5 5 C 1.50700 * 109.47167 * 116.46051 * 3 2 1 6 6 O 1.21285 * 119.99903 * 4.56630 * 5 3 2 7 7 N 1.34777 * 119.99879 * 184.57040 * 5 3 2 8 8 C 1.46496 * 119.99770 * 185.70034 * 7 5 3 9 9 C 1.53003 * 109.47208 * 179.97438 * 8 7 5 10 10 C 1.52998 * 109.47140 * 180.02562 * 9 8 7 11 11 N 1.46501 * 109.47120 * 180.02562 * 10 9 8 12 12 C 1.36935 * 119.99862 * 270.27952 * 11 10 9 13 13 H 1.07995 * 120.00537 * 140.20313 * 12 11 10 14 14 C 1.38812 * 119.99425 * 320.19645 * 12 11 10 15 15 N 1.31615 * 120.00682 * 342.27630 * 14 12 11 16 16 Si 1.86808 * 119.99573 * 162.27663 * 14 12 11 17 17 H 1.48494 * 109.47246 * 359.97438 * 16 14 12 18 18 H 1.48498 * 109.47157 * 120.00045 * 16 14 12 19 19 H 1.48498 * 109.46767 * 239.99704 * 16 14 12 20 20 C 1.46505 * 120.00141 * 89.99423 * 11 10 9 21 21 C 1.53000 * 117.49758 * 183.60045 * 20 11 10 22 22 C 1.52996 * 117.49356 * 114.97854 * 20 11 10 23 23 C 1.52999 * 109.46872 * 236.46207 * 3 2 1 24 24 C 1.52996 * 109.47147 * 62.79155 * 23 3 2 25 25 C 1.52999 * 109.47147 * 180.02562 * 24 23 3 26 26 C 1.53007 * 109.47224 * 59.99604 * 25 24 23 27 27 C 1.52999 * 109.46862 * 300.00258 * 26 25 24 28 28 C 1.52996 * 109.47143 * 60.00097 * 27 26 25 29 29 H 1.08999 * 109.46941 * 177.65566 * 1 2 3 30 30 H 1.09000 * 109.47179 * 297.65102 * 1 2 3 31 31 H 1.08996 * 109.47214 * 57.65464 * 1 2 3 32 32 H 0.96996 * 119.99931 * 5.68944 * 7 5 3 33 33 H 1.09007 * 109.47288 * 59.99360 * 8 7 5 34 34 H 1.09004 * 109.47111 * 299.99433 * 8 7 5 35 35 H 1.08995 * 109.46527 * 59.99839 * 9 8 7 36 36 H 1.08995 * 109.46781 * 299.99869 * 9 8 7 37 37 H 1.08997 * 109.47192 * 59.99782 * 10 9 8 38 38 H 1.09004 * 109.47141 * 299.99856 * 10 9 8 39 39 H 0.96994 * 120.00420 * 185.02674 * 15 14 12 40 40 H 1.08996 * 115.54833 * 329.31487 * 20 11 10 41 41 H 1.08994 * 117.49746 * 0.02562 * 21 20 11 42 42 H 1.09003 * 117.49267 * 145.02382 * 21 20 11 43 43 H 1.09005 * 117.49698 * 214.97440 * 22 20 11 44 44 H 1.08994 * 117.50747 * 359.97438 * 22 20 11 45 45 H 1.09005 * 109.46533 * 182.78748 * 23 3 2 46 46 H 1.09005 * 109.47072 * 299.99263 * 24 23 3 47 47 H 1.08993 * 109.47613 * 59.99931 * 24 23 3 48 48 H 1.09005 * 109.46761 * 300.00095 * 25 24 23 49 49 H 1.09001 * 109.47456 * 179.97438 * 25 24 23 50 50 H 1.08999 * 109.47074 * 180.02562 * 26 25 24 51 51 H 1.08998 * 109.46831 * 60.00155 * 26 25 24 52 52 H 1.08998 * 109.47314 * 299.99602 * 27 26 25 53 53 H 1.09003 * 109.47209 * 179.97438 * 27 26 25 54 54 H 1.09001 * 109.47188 * 179.97438 * 28 27 26 55 55 H 1.08998 * 109.47191 * 60.00071 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3056 0.0000 4 1 1.2208 2.0546 -0.0634 5 6 2.7929 1.5070 1.2720 6 8 2.9168 0.5925 2.0590 7 7 3.3550 2.7034 1.5350 8 6 4.2188 2.8649 2.7071 9 6 4.7238 4.3077 2.7735 10 6 5.6264 4.4763 3.9973 11 7 6.1094 5.8579 4.0613 12 6 7.2750 6.2055 3.4322 13 1 7.3480 7.1502 2.9139 14 6 8.3628 5.3437 3.4608 15 7 8.4148 4.3790 4.3546 16 14 9.7529 5.5531 2.2306 17 1 9.4556 6.7025 1.3387 18 1 11.0231 5.8054 2.9573 19 1 9.8847 4.3174 1.4177 20 6 5.3422 6.8690 4.7930 21 6 5.8541 8.3103 4.7525 22 6 5.9901 7.4858 6.0342 23 6 2.9457 1.4473 -1.2024 24 6 2.1387 1.3119 -2.4951 25 6 3.0743 1.4530 -3.6975 26 6 4.1410 0.3574 -3.6450 27 6 4.9480 0.4929 -2.3522 28 6 4.0124 0.3517 -1.1499 29 1 -0.3633 -1.0268 -0.0420 30 1 -0.3633 0.4769 0.9103 31 1 -0.3633 0.5498 -0.8682 32 1 3.1878 3.4573 0.9481 33 1 5.0682 2.1863 2.6288 34 1 3.6527 2.6359 3.6100 35 1 3.8746 4.9865 2.8516 36 1 5.2899 4.5364 1.8707 37 1 6.4755 3.7974 3.9188 38 1 5.0606 4.2474 4.9004 39 1 9.2066 3.8229 4.4225 40 1 4.2629 6.7181 4.8110 41 1 6.7613 8.5062 4.1812 42 1 5.1113 9.1080 4.7437 43 1 5.3369 7.7413 6.8686 44 1 6.9869 7.1391 6.3067 45 1 3.4267 2.4251 -1.1750 46 1 1.6576 0.3342 -2.5225 47 1 1.3785 2.0921 -2.5324 48 1 3.5558 2.4306 -3.6704 49 1 2.4995 1.3562 -4.6185 50 1 4.8078 0.4583 -4.5014 51 1 3.6595 -0.6200 -3.6721 52 1 5.4295 1.4704 -2.3251 53 1 5.7077 -0.2879 -2.3145 54 1 4.5873 0.4478 -0.2288 55 1 3.5309 -0.6258 -1.1769 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001660756944.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:01:05 Heat of formation + Delta-G solvation = -81.009181 kcal Electronic energy + Delta-G solvation = -30637.074258 eV Core-core repulsion = 26673.743750 eV Total energy + Delta-G solvation = -3963.330507 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.40630 -39.41229 -38.80526 -38.00574 -36.59599 -35.24251 -33.61033 -32.77355 -31.64915 -31.04507 -28.52232 -27.39135 -26.48676 -24.94858 -23.57776 -23.05195 -22.83022 -22.48953 -21.56415 -21.10465 -20.60195 -18.31436 -18.26899 -17.72478 -17.29337 -17.17108 -16.58118 -16.30916 -16.27492 -15.76430 -15.63408 -15.41314 -15.10040 -14.93347 -14.79240 -14.51524 -14.35801 -13.99868 -13.91991 -13.64643 -13.25393 -13.14265 -13.04204 -12.81895 -12.75327 -12.62145 -12.44526 -12.36550 -12.28909 -12.01854 -11.98191 -11.91653 -11.84720 -11.47490 -11.42268 -11.33916 -11.26728 -11.21245 -10.89158 -10.87040 -10.51305 -10.25242 -10.10712 -8.39198 -7.83798 -5.48178 1.42112 1.46336 1.54612 1.55153 2.01271 2.47133 2.92622 3.17469 3.41420 3.51454 3.59682 3.60806 3.79541 3.90550 4.04587 4.17544 4.27166 4.31564 4.33945 4.36581 4.41209 4.47962 4.52830 4.56412 4.56647 4.59808 4.61169 4.64857 4.65556 4.74255 4.76632 4.85890 4.94293 4.96811 5.00332 5.08747 5.12178 5.16080 5.24641 5.28902 5.30317 5.37713 5.38502 5.41360 5.43694 5.48466 5.57610 5.60482 5.69005 5.86532 6.07229 6.50297 6.58232 7.17426 7.23807 7.86171 8.38249 9.12866 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.011414 B = 0.002815 C = 0.002477 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2452.528622 B = 9943.197190 C =11300.556492 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.378 6.378 3 C 0.083 3.917 4 H 0.121 0.879 5 C 0.493 3.507 6 O -0.578 6.578 7 N -0.712 5.712 8 C 0.135 3.865 9 C -0.120 4.120 10 C 0.153 3.847 11 N -0.569 5.569 12 C -0.260 4.260 13 H 0.061 0.939 14 C -0.032 4.032 15 N -0.920 5.920 16 Si 0.953 3.047 17 H -0.263 1.263 18 H -0.293 1.293 19 H -0.290 1.290 20 C 0.103 3.897 21 C -0.178 4.178 22 C -0.223 4.223 23 C -0.083 4.083 24 C -0.105 4.105 25 C -0.117 4.117 26 C -0.117 4.117 27 C -0.120 4.120 28 C -0.107 4.107 29 H 0.096 0.904 30 H 0.039 0.961 31 H 0.070 0.930 32 H 0.414 0.586 33 H 0.039 0.961 34 H 0.057 0.943 35 H 0.072 0.928 36 H 0.056 0.944 37 H 0.062 0.938 38 H 0.027 0.973 39 H 0.251 0.749 40 H 0.113 0.887 41 H 0.074 0.926 42 H 0.112 0.888 43 H 0.099 0.901 44 H 0.051 0.949 45 H 0.093 0.907 46 H 0.066 0.934 47 H 0.083 0.917 48 H 0.065 0.935 49 H 0.077 0.923 50 H 0.068 0.932 51 H 0.060 0.940 52 H 0.060 0.940 53 H 0.054 0.946 54 H 0.027 0.973 55 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.561 -3.314 -16.231 24.142 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.296 6.296 3 C 0.022 3.978 4 H 0.139 0.861 5 C 0.280 3.720 6 O -0.457 6.457 7 N -0.366 5.366 8 C 0.010 3.990 9 C -0.160 4.160 10 C 0.026 3.974 11 N -0.287 5.287 12 C -0.390 4.390 13 H 0.078 0.922 14 C -0.229 4.229 15 N -0.564 5.564 16 Si 0.781 3.219 17 H -0.187 1.187 18 H -0.221 1.221 19 H -0.217 1.217 20 C -0.005 4.005 21 C -0.217 4.217 22 C -0.264 4.264 23 C -0.102 4.102 24 C -0.143 4.143 25 C -0.154 4.154 26 C -0.154 4.154 27 C -0.157 4.157 28 C -0.145 4.145 29 H 0.114 0.886 30 H 0.057 0.943 31 H 0.089 0.911 32 H 0.251 0.749 33 H 0.057 0.943 34 H 0.075 0.925 35 H 0.091 0.909 36 H 0.075 0.925 37 H 0.080 0.920 38 H 0.046 0.954 39 H 0.060 0.940 40 H 0.131 0.869 41 H 0.092 0.908 42 H 0.130 0.870 43 H 0.118 0.882 44 H 0.070 0.930 45 H 0.111 0.889 46 H 0.084 0.916 47 H 0.102 0.898 48 H 0.084 0.916 49 H 0.096 0.904 50 H 0.086 0.914 51 H 0.079 0.921 52 H 0.078 0.922 53 H 0.073 0.927 54 H 0.046 0.954 55 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -17.254 -4.329 -15.709 23.732 hybrid contribution 1.329 0.221 0.103 1.351 sum -15.925 -4.108 -15.606 22.672 Atomic orbital electron populations 1.23125 0.79272 1.04173 1.00952 1.88004 1.21454 1.25716 1.94417 1.22179 0.96832 0.87889 0.90928 0.86118 1.21724 0.79751 0.82035 0.88494 1.90684 1.61486 1.43137 1.50423 1.45959 1.49301 1.12401 1.28934 1.21083 0.92543 0.97377 0.87952 1.22083 0.99634 0.93394 1.00876 1.20699 0.96274 0.86798 0.93599 1.43545 1.22701 1.04986 1.57453 1.19193 0.89997 1.04107 1.25706 0.92189 1.25942 0.99396 0.98829 0.98731 1.70013 1.28545 1.22868 1.34974 0.85433 0.79359 0.77715 0.79371 1.18691 1.22052 1.21708 1.21538 0.94344 0.89334 0.95258 1.23012 1.03217 0.94638 1.00783 1.23256 1.01878 1.08231 0.93041 1.21469 0.95220 0.99992 0.93546 1.21525 0.97717 1.02971 0.92075 1.21529 0.96852 0.98856 0.98169 1.21526 0.97822 0.99520 0.96560 1.21540 0.97689 1.01621 0.94895 1.21402 0.96584 0.99370 0.97163 0.88589 0.94260 0.91143 0.74869 0.94259 0.92490 0.90947 0.92548 0.91956 0.95436 0.93958 0.86902 0.90753 0.87013 0.88235 0.93032 0.88859 0.91560 0.89810 0.91618 0.90419 0.91369 0.92137 0.92166 0.92693 0.95450 0.92187 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.31 10.70 113.37 1.21 1.52 16 2 O -0.38 -8.82 8.53 -129.98 -1.11 -9.93 16 3 C 0.08 1.70 2.36 29.85 0.07 1.77 16 4 H 0.12 1.60 7.61 -2.38 -0.02 1.58 16 5 C 0.49 14.48 6.05 87.66 0.53 15.01 16 6 O -0.58 -23.14 16.52 15.95 0.26 -22.88 16 7 N -0.71 -18.89 5.46 -463.05 -2.53 -21.42 16 8 C 0.14 4.52 5.68 86.38 0.49 5.01 16 9 C -0.12 -4.20 5.65 30.59 0.17 -4.03 16 10 C 0.15 6.88 5.33 86.38 0.46 7.34 16 11 N -0.57 -27.12 2.75 -678.04 -1.86 -28.99 16 12 C -0.26 -13.61 8.48 84.03 0.71 -12.90 16 13 H 0.06 3.14 6.73 -2.91 -0.02 3.12 16 14 C -0.03 -1.71 5.03 84.86 0.43 -1.28 16 15 N -0.92 -53.43 11.39 21.65 0.25 -53.18 16 16 Si 0.95 43.86 29.59 68.60 2.03 45.89 16 17 H -0.26 -11.43 7.11 99.48 0.71 -10.72 16 18 H -0.29 -13.65 7.11 99.48 0.71 -12.94 16 19 H -0.29 -13.43 7.11 99.48 0.71 -12.72 16 20 C 0.10 4.16 6.56 44.99 0.30 4.46 16 21 C -0.18 -6.55 9.80 30.59 0.30 -6.25 16 22 C -0.22 -8.83 10.36 30.59 0.32 -8.52 16 23 C -0.08 -1.50 2.01 -10.80 -0.02 -1.52 16 24 C -0.11 -1.34 5.08 30.59 0.16 -1.19 16 25 C -0.12 -1.43 5.92 30.60 0.18 -1.25 16 26 C -0.12 -1.78 5.92 30.60 0.18 -1.60 16 27 C -0.12 -2.40 5.92 30.59 0.18 -2.22 16 28 C -0.11 -2.55 4.82 30.59 0.15 -2.40 16 29 H 0.10 1.25 8.14 -2.39 -0.02 1.23 16 30 H 0.04 0.60 8.14 -2.39 -0.02 0.58 16 31 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 32 H 0.41 8.09 8.38 -92.71 -0.78 7.32 16 33 H 0.04 1.53 8.14 -2.38 -0.02 1.51 16 34 H 0.06 1.98 8.14 -2.38 -0.02 1.96 16 35 H 0.07 2.23 8.14 -2.39 -0.02 2.21 16 36 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 37 H 0.06 3.32 5.53 -2.39 -0.01 3.31 16 38 H 0.03 1.20 8.07 -2.38 -0.02 1.18 16 39 H 0.25 14.24 8.32 -92.71 -0.77 13.46 16 40 H 0.11 3.89 8.14 -2.39 -0.02 3.87 16 41 H 0.07 3.08 6.46 -2.39 -0.02 3.06 16 42 H 0.11 3.25 8.14 -2.39 -0.02 3.23 16 43 H 0.10 3.29 8.14 -2.38 -0.02 3.27 16 44 H 0.05 2.45 8.14 -2.39 -0.02 2.43 16 45 H 0.09 1.52 7.99 -2.38 -0.02 1.51 16 46 H 0.07 0.93 7.76 -2.38 -0.02 0.91 16 47 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 48 H 0.07 0.80 8.14 -2.38 -0.02 0.78 16 49 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 50 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 51 H 0.06 0.93 8.14 -2.39 -0.02 0.92 16 52 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 53 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 54 H 0.03 0.82 7.31 -2.39 -0.02 0.80 16 55 H 0.06 1.55 7.61 -2.39 -0.02 1.53 16 Total: -1.00 -70.70 429.56 2.92 -67.78 By element: Atomic # 1 Polarization: 30.69 SS G_CDS: 0.06 Total: 30.76 kcal Atomic # 6 Polarization: -13.86 SS G_CDS: 5.81 Total: -8.04 kcal Atomic # 7 Polarization: -99.44 SS G_CDS: -4.14 Total: -103.58 kcal Atomic # 8 Polarization: -31.96 SS G_CDS: -0.85 Total: -32.81 kcal Atomic # 14 Polarization: 43.86 SS G_CDS: 2.03 Total: 45.89 kcal Total: -70.70 2.92 -67.78 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001660756944.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.226 kcal (2) G-P(sol) polarization free energy of solvation -70.702 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.928 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.919 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.783 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.009 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds