Wall clock time and date at job start Tue Mar 31 2020 22:13:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42907 * 113.99619 * 2 1 4 4 C 1.53003 * 109.46902 * 180.02562 * 3 2 1 5 5 C 1.50697 * 109.47132 * 65.82498 * 4 3 2 6 6 O 1.21280 * 120.00033 * 246.39655 * 5 4 3 7 7 N 1.34779 * 120.00054 * 66.39792 * 5 4 3 8 8 C 1.46504 * 119.99533 * 5.83053 * 7 5 4 9 9 C 1.46498 * 120.00250 * 185.83170 * 7 5 4 10 10 C 1.53034 * 109.46114 * 240.06721 * 9 7 5 11 11 C 1.53194 * 109.31510 * 178.61181 * 10 9 7 12 12 N 1.46927 * 108.77036 * 54.63786 * 11 10 9 13 13 C 1.36936 * 120.62841 * 126.37458 * 12 11 10 14 14 H 1.07999 * 119.99699 * 330.86451 * 13 12 11 15 15 C 1.38808 * 120.00074 * 150.87383 * 13 12 11 16 16 N 1.31621 * 120.00148 * 342.44985 * 15 13 12 17 17 Si 1.86800 * 120.00376 * 162.45252 * 15 13 12 18 18 H 1.48503 * 109.46861 * 59.99579 * 17 15 13 19 19 H 1.48496 * 109.47268 * 179.97438 * 17 15 13 20 20 H 1.48496 * 109.47018 * 299.99992 * 17 15 13 21 21 C 1.46924 * 118.73954 * 306.38663 * 12 11 10 22 22 C 1.53039 * 109.45901 * 119.99919 * 9 7 5 23 23 C 1.53004 * 109.47108 * 305.82830 * 4 3 2 24 24 C 1.52996 * 109.47354 * 179.97438 * 23 4 3 25 25 C 1.53001 * 109.46755 * 59.99790 * 24 23 4 26 26 C 1.52995 * 109.47405 * 300.00048 * 25 24 23 27 27 C 1.52996 * 109.47203 * 60.00227 * 26 25 24 28 28 H 1.08997 * 109.47401 * 299.99844 * 1 2 3 29 29 H 1.08997 * 109.47342 * 60.00185 * 1 2 3 30 30 H 1.09001 * 109.46842 * 179.97438 * 1 2 3 31 31 H 1.08993 * 109.47357 * 299.99696 * 3 2 1 32 32 H 1.09000 * 109.46788 * 60.00251 * 3 2 1 33 33 H 1.09006 * 109.46768 * 90.68963 * 8 7 5 34 34 H 1.09000 * 109.47042 * 210.68374 * 8 7 5 35 35 H 1.08997 * 109.47162 * 330.68937 * 8 7 5 36 36 H 1.08999 * 109.45568 * 0.02949 * 9 7 5 37 37 H 1.08992 * 109.49993 * 298.56811 * 10 9 7 38 38 H 1.09004 * 109.49594 * 58.66398 * 10 9 7 39 39 H 1.08995 * 109.58508 * 294.85263 * 11 10 9 40 40 H 1.08999 * 109.70263 * 174.49223 * 11 10 9 41 41 H 0.96999 * 120.00830 * 180.02562 * 16 15 13 42 42 H 1.08999 * 109.59132 * 293.82588 * 21 12 11 43 43 H 1.08999 * 109.70217 * 173.46624 * 21 12 11 44 44 H 1.09002 * 109.49719 * 301.33769 * 22 9 7 45 45 H 1.08998 * 109.49659 * 61.40514 * 22 9 7 46 46 H 1.09008 * 109.47240 * 300.00066 * 23 4 3 47 47 H 1.08998 * 109.47259 * 59.99880 * 23 4 3 48 48 H 1.08998 * 109.47192 * 300.00423 * 24 23 4 49 49 H 1.09001 * 109.47154 * 179.97438 * 24 23 4 50 50 H 1.09006 * 109.46866 * 180.02562 * 25 24 23 51 51 H 1.09004 * 109.47428 * 60.00513 * 25 24 23 52 52 H 1.08998 * 109.47424 * 299.99907 * 26 25 24 53 53 H 1.08998 * 109.47303 * 180.02562 * 26 25 24 54 54 H 1.08997 * 109.47629 * 180.02562 * 27 26 25 55 55 H 1.08998 * 109.47579 * 59.99915 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3056 0.0000 4 6 3.5354 1.1848 -0.0006 5 6 3.9897 0.5653 -1.2971 6 8 4.5032 -0.5334 -1.2971 7 7 3.8254 1.2323 -2.4567 8 6 3.3239 2.6088 -2.4452 9 6 4.1483 0.5810 -3.7286 10 6 5.2404 1.3772 -4.4464 11 6 5.5999 0.6744 -5.7593 12 7 4.3735 0.4871 -6.5465 13 6 4.2995 0.9326 -7.8392 14 1 4.8806 1.7883 -8.1496 15 6 3.4773 0.2844 -8.7507 16 7 3.0435 -0.9320 -8.4966 17 14 2.9866 1.1384 -10.3379 18 1 4.2051 1.4639 -11.1220 19 1 2.1119 0.2400 -11.1334 20 1 2.2534 2.3901 -10.0203 21 6 3.2281 -0.1870 -5.9202 22 6 2.8952 0.5255 -4.6055 23 6 3.9777 0.3026 1.1686 24 6 5.5028 0.1812 1.1676 25 6 6.1250 1.5714 1.3137 26 6 5.6828 2.4535 0.1445 27 6 4.1577 2.5749 0.1455 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.6886 1.8464 -0.8899 32 1 1.6885 1.8464 0.8900 33 1 4.1640 3.3011 -2.3895 34 1 2.7579 2.7969 -3.3575 35 1 2.6767 2.7525 -1.5799 36 1 4.5033 -0.4318 -3.5380 37 1 4.8772 2.3825 -4.6595 38 1 6.1244 1.4362 -3.8114 39 1 6.0475 -0.2958 -5.5437 40 1 6.3055 1.2855 -6.3220 41 1 2.4692 -1.3851 -9.1336 42 1 3.4823 -1.2275 -5.7178 43 1 2.3670 -0.1444 -6.5871 44 1 2.1101 -0.0218 -4.0837 45 1 2.5538 1.5388 -4.8166 46 1 3.6490 0.7506 2.1064 47 1 3.5347 -0.6879 1.0643 48 1 5.8310 -0.2669 0.2298 49 1 5.8179 -0.4469 2.0009 50 1 7.2116 1.4850 1.3126 51 1 5.7968 2.0196 2.2516 52 1 6.0111 2.0054 -0.7933 53 1 6.1265 3.4437 0.2484 54 1 3.8426 3.2030 -0.6877 55 1 3.8294 3.0231 1.0833 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001660775904.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:13:44 Heat of formation + Delta-G solvation = -71.595217 kcal Electronic energy + Delta-G solvation = -32782.992969 eV Core-core repulsion = 28820.070682 eV Total energy + Delta-G solvation = -3962.922287 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -42.24247 -39.67406 -38.57402 -37.82493 -36.71917 -34.52370 -33.14262 -31.99894 -31.59670 -31.04859 -28.17598 -27.98515 -27.05060 -26.12325 -24.54558 -23.90185 -23.51283 -22.67575 -21.59755 -20.52490 -19.71512 -18.70217 -17.81133 -17.37347 -17.11597 -16.97305 -16.73517 -16.38867 -16.04429 -15.66555 -15.41775 -15.18926 -15.01288 -14.84936 -14.77494 -14.61719 -14.25066 -14.16762 -13.98496 -13.56996 -13.29939 -13.18968 -13.05449 -12.97448 -12.89706 -12.72995 -12.59080 -12.56201 -12.44097 -12.18589 -12.06867 -12.01993 -11.93271 -11.86793 -11.60209 -11.43422 -11.33778 -11.03924 -10.82709 -10.63516 -10.56937 -10.26580 -9.50134 -8.72234 -7.88862 -5.36207 1.47988 1.50029 1.57432 1.73692 2.04779 2.51224 2.77445 3.26932 3.37233 3.62626 3.75058 3.77320 3.87503 4.01461 4.04801 4.07567 4.16990 4.31062 4.33843 4.36541 4.43252 4.47110 4.50519 4.52124 4.53457 4.58945 4.62266 4.63848 4.67542 4.73704 4.75567 4.81767 4.85723 4.92663 4.95245 5.01471 5.04065 5.07680 5.12622 5.16502 5.25528 5.27098 5.31208 5.38175 5.41450 5.47726 5.60000 5.62214 5.65143 5.68150 6.22173 6.37028 6.54946 7.11893 7.30708 7.81482 8.36382 9.18408 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.016856 B = 0.003229 C = 0.002966 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1660.723723 B = 8670.345308 C = 9436.504501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.416 6.416 3 C 0.061 3.939 4 C -0.067 4.067 5 C 0.527 3.473 6 O -0.582 6.582 7 N -0.606 5.606 8 C 0.053 3.947 9 C 0.158 3.842 10 C -0.117 4.117 11 C 0.143 3.857 12 N -0.606 5.606 13 C -0.267 4.267 14 H 0.071 0.929 15 C -0.049 4.049 16 N -0.937 5.937 17 Si 0.971 3.029 18 H -0.275 1.275 19 H -0.296 1.296 20 H -0.273 1.273 21 C 0.185 3.815 22 C -0.125 4.125 23 C -0.082 4.082 24 C -0.133 4.133 25 C -0.114 4.114 26 C -0.120 4.120 27 C -0.129 4.129 28 H 0.064 0.936 29 H 0.044 0.956 30 H 0.083 0.917 31 H 0.069 0.931 32 H 0.093 0.907 33 H 0.079 0.921 34 H 0.072 0.928 35 H 0.107 0.893 36 H 0.055 0.945 37 H 0.075 0.925 38 H 0.066 0.934 39 H 0.001 0.999 40 H 0.064 0.936 41 H 0.250 0.750 42 H -0.015 1.015 43 H 0.057 0.943 44 H 0.051 0.949 45 H 0.071 0.929 46 H 0.090 0.910 47 H 0.044 0.956 48 H 0.045 0.955 49 H 0.061 0.939 50 H 0.057 0.943 51 H 0.083 0.917 52 H 0.032 0.968 53 H 0.089 0.911 54 H 0.106 0.894 55 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.531 13.006 23.644 27.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.335 6.335 3 C -0.016 4.016 4 C -0.071 4.071 5 C 0.317 3.683 6 O -0.462 6.462 7 N -0.338 5.338 8 C -0.088 4.088 9 C 0.054 3.946 10 C -0.156 4.156 11 C 0.017 3.983 12 N -0.330 5.330 13 C -0.396 4.396 14 H 0.089 0.911 15 C -0.245 4.245 16 N -0.583 5.583 17 Si 0.798 3.202 18 H -0.201 1.201 19 H -0.223 1.223 20 H -0.199 1.199 21 C 0.058 3.942 22 C -0.165 4.165 23 C -0.120 4.120 24 C -0.170 4.170 25 C -0.151 4.151 26 C -0.158 4.158 27 C -0.166 4.166 28 H 0.083 0.917 29 H 0.063 0.937 30 H 0.102 0.898 31 H 0.086 0.914 32 H 0.111 0.889 33 H 0.097 0.903 34 H 0.090 0.910 35 H 0.125 0.875 36 H 0.074 0.926 37 H 0.094 0.906 38 H 0.085 0.915 39 H 0.019 0.981 40 H 0.082 0.918 41 H 0.059 0.941 42 H 0.003 0.997 43 H 0.076 0.924 44 H 0.070 0.930 45 H 0.090 0.910 46 H 0.108 0.892 47 H 0.062 0.938 48 H 0.064 0.936 49 H 0.080 0.920 50 H 0.076 0.924 51 H 0.102 0.898 52 H 0.051 0.949 53 H 0.108 0.892 54 H 0.123 0.877 55 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -2.239 12.179 23.534 26.593 hybrid contribution -0.375 -0.637 -1.440 1.619 sum -2.614 11.542 22.094 25.064 Atomic orbital electron populations 1.22879 0.79547 1.03363 1.01078 1.87957 1.21346 1.28612 1.95603 1.22929 0.90594 0.85184 1.02846 1.20926 0.95249 0.98799 0.92093 1.20999 0.76897 0.84655 0.85786 1.90608 1.45407 1.23043 1.87118 1.47989 1.65186 1.15495 1.05111 1.22630 1.00586 0.81171 1.04433 1.20681 0.95099 0.96255 0.82578 1.22103 0.97720 0.99692 0.96132 1.21000 0.88884 0.96561 0.91831 1.44297 1.09656 1.68529 1.10482 1.19509 1.25512 1.08016 0.86606 0.91092 1.25892 1.02219 0.95432 1.00940 1.70212 1.38139 1.12135 1.37814 0.85299 0.77974 0.77714 0.79192 1.20056 1.22279 1.19896 1.20447 0.91050 0.91449 0.91236 1.22256 0.96619 1.01358 0.96221 1.21202 0.95665 0.98758 0.96351 1.21693 0.95636 0.98101 1.01576 1.21531 0.99870 0.94518 0.99199 1.21528 0.95671 1.00773 0.97815 1.22255 0.95422 0.92690 1.06222 0.91743 0.93723 0.89797 0.91370 0.88928 0.90252 0.90982 0.87535 0.92635 0.90647 0.91497 0.98065 0.91778 0.94089 0.99729 0.92424 0.93018 0.91016 0.89161 0.93752 0.93582 0.91998 0.92382 0.89849 0.94872 0.89241 0.87654 0.87620 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.47 11.01 113.37 1.25 1.72 16 2 O -0.42 -10.16 9.56 -148.98 -1.42 -11.59 16 3 C 0.06 1.07 4.52 71.98 0.33 1.40 16 4 C -0.07 -1.41 0.34 -52.93 -0.02 -1.43 16 5 C 0.53 16.22 4.64 87.66 0.41 16.63 16 6 O -0.58 -23.85 13.27 -3.03 -0.04 -23.89 16 7 N -0.61 -17.46 2.76 -822.45 -2.27 -19.73 16 8 C 0.05 1.00 7.40 127.77 0.95 1.95 16 9 C 0.16 5.80 2.48 45.02 0.11 5.91 16 10 C -0.12 -4.08 5.34 30.67 0.16 -3.92 16 11 C 0.14 6.25 6.52 86.36 0.56 6.81 16 12 N -0.61 -31.26 2.99 -699.10 -2.09 -33.35 16 13 C -0.27 -14.73 9.57 84.03 0.80 -13.92 16 14 H 0.07 3.76 7.89 -2.91 -0.02 3.73 16 15 C -0.05 -2.77 4.89 84.86 0.42 -2.36 16 16 N -0.94 -56.72 11.31 21.65 0.24 -56.47 16 17 Si 0.97 44.69 29.59 68.60 2.03 46.72 16 18 H -0.27 -12.22 7.11 99.48 0.71 -11.52 16 19 H -0.30 -13.82 7.11 99.48 0.71 -13.11 16 20 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 21 C 0.18 9.37 5.30 86.36 0.46 9.83 16 22 C -0.12 -4.93 5.31 30.67 0.16 -4.77 16 23 C -0.08 -1.84 4.15 30.59 0.13 -1.71 16 24 C -0.13 -3.12 5.63 30.59 0.17 -2.95 16 25 C -0.11 -1.94 5.92 30.59 0.18 -1.76 16 26 C -0.12 -1.98 5.70 30.59 0.17 -1.81 16 27 C -0.13 -1.73 4.27 30.59 0.13 -1.60 16 28 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 29 H 0.04 0.72 8.14 -2.39 -0.02 0.70 16 30 H 0.08 1.42 8.14 -2.39 -0.02 1.41 16 31 H 0.07 1.09 5.38 -2.39 -0.01 1.08 16 32 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 33 H 0.08 1.22 7.36 -2.38 -0.02 1.20 16 34 H 0.07 1.45 6.46 -2.39 -0.02 1.43 16 35 H 0.11 1.43 3.08 -2.39 -0.01 1.42 16 36 H 0.06 2.49 6.91 -2.39 -0.02 2.47 16 37 H 0.07 2.43 7.72 -2.39 -0.02 2.42 16 38 H 0.07 2.15 8.14 -2.38 -0.02 2.13 16 39 H 0.00 0.06 8.14 -2.39 -0.02 0.04 16 40 H 0.06 2.65 7.93 -2.39 -0.02 2.63 16 41 H 0.25 14.67 8.31 -92.71 -0.77 13.90 16 42 H -0.02 -0.87 8.14 -2.39 -0.02 -0.89 16 43 H 0.06 3.23 6.17 -2.39 -0.01 3.22 16 44 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16 45 H 0.07 2.63 6.72 -2.39 -0.02 2.62 16 46 H 0.09 1.47 8.14 -2.38 -0.02 1.45 16 47 H 0.04 1.29 7.43 -2.39 -0.02 1.27 16 48 H 0.05 1.47 5.75 -2.39 -0.01 1.46 16 49 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 50 H 0.06 1.00 8.14 -2.38 -0.02 0.98 16 51 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 52 H 0.03 0.76 7.22 -2.39 -0.02 0.74 16 53 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 54 H 0.11 1.14 3.63 -2.39 -0.01 1.13 16 55 H 0.11 0.82 8.14 -2.39 -0.02 0.80 16 Total: -1.00 -75.44 395.72 3.68 -71.76 By element: Atomic # 1 Polarization: 17.67 SS G_CDS: 0.86 Total: 18.53 kcal Atomic # 6 Polarization: 1.64 SS G_CDS: 6.37 Total: 8.01 kcal Atomic # 7 Polarization: -105.43 SS G_CDS: -4.11 Total: -109.55 kcal Atomic # 8 Polarization: -34.02 SS G_CDS: -1.46 Total: -35.48 kcal Atomic # 14 Polarization: 44.69 SS G_CDS: 2.03 Total: 46.72 kcal Total: -75.44 3.68 -71.76 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001660775904.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.163 kcal (2) G-P(sol) polarization free energy of solvation -75.440 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.277 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.682 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.758 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.595 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds