Wall clock time and date at job start Tue Mar 31 2020 22:00:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50696 * 119.99614 * 2 1 4 4 C 1.50700 * 119.99971 * 179.97438 * 2 1 3 5 5 H 1.09004 * 109.46960 * 5.00799 * 4 2 1 6 6 C 1.52996 * 109.47219 * 245.00392 * 4 2 1 7 7 C 1.50697 * 109.47044 * 175.00332 * 6 4 2 8 8 O 1.21285 * 120.00105 * 0.02562 * 7 6 4 9 9 N 1.34774 * 120.00403 * 180.02562 * 7 6 4 10 10 C 1.46933 * 120.62831 * 359.97438 * 9 7 6 11 11 C 1.53187 * 108.77234 * 126.37015 * 10 9 7 12 12 C 1.53039 * 109.31301 * 54.64001 * 11 10 9 13 13 C 1.53040 * 109.54002 * 298.63035 * 12 11 10 14 14 H 1.09003 * 109.49833 * 301.41973 * 13 12 11 15 15 C 1.52995 * 109.50354 * 181.34815 * 13 12 11 16 16 N 1.46501 * 109.47032 * 64.99891 * 15 13 12 17 17 C 1.46503 * 119.99647 * 90.00291 * 16 15 13 18 18 C 1.36934 * 120.00269 * 270.00713 * 16 15 13 19 19 H 1.07998 * 120.00019 * 22.10244 * 18 16 15 20 20 C 1.38814 * 119.99633 * 202.11041 * 18 16 15 21 21 N 1.31610 * 120.00536 * 14.14697 * 20 18 16 22 22 Si 1.86808 * 119.99535 * 194.14388 * 20 18 16 23 23 H 1.48497 * 109.47297 * 0.02562 * 22 20 18 24 24 H 1.48502 * 109.46770 * 120.00261 * 22 20 18 25 25 H 1.48507 * 109.46949 * 239.99917 * 22 20 18 26 26 C 1.46925 * 120.63280 * 179.71933 * 9 7 6 27 27 O 1.42905 * 109.46649 * 125.00270 * 4 2 1 28 28 C 1.42896 * 113.99984 * 270.00103 * 27 4 2 29 29 C 1.52999 * 109.46774 * 180.02562 * 28 27 4 30 30 H 1.08005 * 119.99913 * 179.97438 * 1 2 3 31 31 H 1.08002 * 120.00402 * 0.02562 * 1 2 3 32 32 H 1.09001 * 109.47345 * 269.99355 * 3 2 1 33 33 H 1.08995 * 109.47480 * 29.99988 * 3 2 1 34 34 H 1.09005 * 109.46807 * 149.99783 * 3 2 1 35 35 H 1.09002 * 109.47116 * 295.00411 * 6 4 2 36 36 H 1.08997 * 109.47427 * 55.00137 * 6 4 2 37 37 H 1.08995 * 109.58965 * 246.15784 * 10 9 7 38 38 H 1.09001 * 109.58200 * 6.58978 * 10 9 7 39 39 H 1.09006 * 109.49664 * 174.58704 * 11 10 9 40 40 H 1.09002 * 109.50227 * 294.65503 * 11 10 9 41 41 H 1.08997 * 109.46266 * 58.65269 * 12 11 10 42 42 H 1.09007 * 109.46013 * 178.61457 * 12 11 10 43 43 H 1.09000 * 109.47317 * 185.00219 * 15 13 12 44 44 H 1.08996 * 109.47163 * 305.00627 * 15 13 12 45 45 H 1.08995 * 109.47485 * 95.13501 * 17 16 15 46 46 H 1.09006 * 109.46965 * 215.13185 * 17 16 15 47 47 H 1.08999 * 109.47136 * 335.12979 * 17 16 15 48 48 H 0.97001 * 120.00379 * 180.02562 * 21 20 18 49 49 H 1.08997 * 109.58923 * 353.41960 * 26 9 7 50 50 H 1.09006 * 109.58370 * 113.84548 * 26 9 7 51 51 H 1.08997 * 109.47061 * 299.99784 * 28 27 4 52 52 H 1.09001 * 109.47369 * 60.00380 * 28 27 4 53 53 H 1.08999 * 109.47322 * 180.02562 * 29 28 27 54 54 H 1.08998 * 109.47430 * 299.99936 * 29 28 27 55 55 H 1.08996 * 109.47385 * 60.00298 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 6 2.0635 -1.3051 0.0006 5 1 1.3585 -2.1317 -0.0888 6 6 2.8464 -1.4415 1.3080 7 6 3.5008 -2.7978 1.3625 8 8 3.3558 -3.5784 0.4456 9 7 4.2473 -3.1435 2.4300 10 6 4.4327 -2.2085 3.5482 11 6 4.0353 -2.9117 4.8498 12 6 4.8261 -4.2152 4.9828 13 6 4.4884 -5.1405 3.8115 14 1 3.4170 -5.3414 3.8037 15 6 5.2537 -6.4566 3.9631 16 7 4.7842 -7.1594 5.1597 17 6 3.6680 -8.1035 5.0640 18 6 5.3885 -6.9340 6.3676 19 1 5.9418 -6.0213 6.5326 20 6 5.2902 -7.8787 7.3799 21 7 4.8669 -9.0946 7.1066 22 14 5.7588 -7.4243 9.1302 23 1 6.1997 -6.0069 9.1725 24 1 4.5832 -7.6033 10.0197 25 1 6.8655 -8.3014 9.5899 26 6 4.8866 -4.4646 2.5003 27 8 2.9710 -1.3316 -1.1031 28 6 2.4140 -1.8773 -2.3005 29 6 3.4684 -1.8567 -3.4089 30 1 -0.5400 -0.9354 -0.0004 31 1 -0.5401 0.9353 -0.0004 32 1 2.2452 1.6198 -1.0277 33 1 1.4744 2.0647 0.5138 34 1 3.0158 1.1748 0.5139 35 1 3.6116 -0.6666 1.3558 36 1 2.1656 -1.3323 2.1522 37 1 5.4783 -1.9051 3.6013 38 1 3.8026 -1.3316 3.3995 39 1 4.2586 -2.2628 5.6967 40 1 2.9681 -3.1332 4.8326 41 1 5.8935 -3.9948 4.9754 42 1 4.5632 -4.7054 5.9203 43 1 5.0827 -7.0796 3.0852 44 1 6.3193 -6.2482 4.0589 45 1 4.0565 -9.1145 4.9425 46 1 3.0690 -8.0513 5.9732 47 1 3.0478 -7.8469 4.2051 48 1 4.7978 -9.7546 7.8140 49 1 4.5560 -5.0757 1.6605 50 1 5.9699 -4.3485 2.4664 51 1 2.0983 -2.9047 -2.1190 52 1 1.5538 -1.2814 -2.6057 53 1 3.0435 -2.2725 -4.3225 54 1 3.7846 -0.8295 -3.5906 55 1 4.3283 -2.4529 -3.1036 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001661213631.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:00:13 Heat of formation + Delta-G solvation = -69.446407 kcal Electronic energy + Delta-G solvation = -30875.053549 eV Core-core repulsion = 26912.224442 eV Total energy + Delta-G solvation = -3962.829108 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.35374 -39.70970 -38.63903 -37.13319 -36.10674 -34.42998 -32.99184 -32.71746 -32.00590 -30.86982 -28.22727 -28.01285 -27.40953 -26.48502 -24.67116 -23.66070 -23.63136 -22.66646 -20.97472 -19.90294 -19.77417 -18.62609 -18.04570 -17.76105 -17.15883 -16.79614 -16.56618 -16.26404 -15.80761 -15.47945 -15.32975 -15.24871 -14.91005 -14.84268 -14.71793 -14.51459 -14.10546 -14.05186 -13.92145 -13.66362 -13.38217 -13.30207 -13.18259 -12.97121 -12.79510 -12.77092 -12.58794 -12.51649 -12.43581 -12.31670 -12.13985 -11.98074 -11.93422 -11.84486 -11.78798 -11.64127 -11.39225 -11.14783 -10.76136 -10.59442 -10.45782 -10.08411 -9.57104 -8.73654 -7.78384 -5.25652 1.19741 1.47062 1.48461 1.58486 1.68903 2.05580 2.53773 2.78781 3.34805 3.45908 3.67437 3.85245 3.90251 3.92246 4.05133 4.07631 4.14817 4.19968 4.29572 4.35078 4.40690 4.45188 4.46863 4.50047 4.59765 4.62273 4.73480 4.75225 4.77813 4.80849 4.85671 4.87998 4.91505 4.94254 4.97107 5.00356 5.02169 5.07004 5.19913 5.22673 5.24371 5.25953 5.35523 5.57933 5.59624 5.64355 5.64936 5.66267 5.73516 5.82343 6.33814 6.35909 6.50275 7.17827 7.23238 7.90149 8.36381 9.25952 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.019786 B = 0.002370 C = 0.002246 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1414.785980 B =11813.383712 C =12464.193203 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.155 4.155 3 C -0.109 4.109 4 C 0.140 3.860 5 H 0.053 0.947 6 C -0.128 4.128 7 C 0.510 3.490 8 O -0.581 6.581 9 N -0.610 5.610 10 C 0.107 3.893 11 C -0.128 4.128 12 C -0.108 4.108 13 C -0.101 4.101 14 H 0.042 0.958 15 C 0.156 3.844 16 N -0.615 5.615 17 C 0.179 3.821 18 C -0.243 4.243 19 H 0.082 0.918 20 C -0.063 4.063 21 N -0.945 5.945 22 Si 0.964 3.036 23 H -0.260 1.260 24 H -0.296 1.296 25 H -0.297 1.297 26 C 0.127 3.873 27 O -0.384 6.384 28 C 0.061 3.939 29 C -0.144 4.144 30 H 0.095 0.905 31 H 0.119 0.881 32 H 0.064 0.936 33 H 0.076 0.924 34 H 0.066 0.934 35 H 0.122 0.878 36 H 0.128 0.872 37 H 0.084 0.916 38 H 0.112 0.888 39 H 0.093 0.907 40 H 0.054 0.946 41 H 0.059 0.941 42 H 0.056 0.944 43 H 0.036 0.964 44 H 0.049 0.951 45 H 0.003 0.997 46 H 0.015 0.985 47 H 0.020 0.980 48 H 0.245 0.755 49 H 0.067 0.933 50 H 0.074 0.926 51 H 0.033 0.967 52 H 0.054 0.946 53 H 0.086 0.914 54 H 0.067 0.933 55 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.069 24.571 -14.736 29.287 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.156 4.156 3 C -0.166 4.166 4 C 0.082 3.918 5 H 0.071 0.929 6 C -0.167 4.167 7 C 0.300 3.700 8 O -0.460 6.460 9 N -0.343 5.343 10 C -0.014 4.014 11 C -0.166 4.166 12 C -0.146 4.146 13 C -0.123 4.123 14 H 0.061 0.939 15 C 0.029 3.971 16 N -0.338 5.338 17 C 0.033 3.967 18 C -0.373 4.373 19 H 0.100 0.900 20 C -0.257 4.257 21 N -0.593 5.593 22 Si 0.793 3.207 23 H -0.184 1.184 24 H -0.223 1.223 25 H -0.224 1.224 26 C 0.003 3.997 27 O -0.303 6.303 28 C -0.015 4.015 29 C -0.201 4.201 30 H 0.113 0.887 31 H 0.137 0.863 32 H 0.083 0.917 33 H 0.095 0.905 34 H 0.085 0.915 35 H 0.140 0.860 36 H 0.146 0.854 37 H 0.102 0.898 38 H 0.131 0.869 39 H 0.112 0.888 40 H 0.073 0.927 41 H 0.078 0.922 42 H 0.075 0.925 43 H 0.055 0.945 44 H 0.068 0.932 45 H 0.021 0.979 46 H 0.034 0.966 47 H 0.039 0.961 48 H 0.054 0.946 49 H 0.085 0.915 50 H 0.092 0.908 51 H 0.051 0.949 52 H 0.073 0.927 53 H 0.104 0.896 54 H 0.086 0.914 55 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -5.955 24.111 -15.109 29.070 hybrid contribution -0.153 -1.108 1.092 1.563 sum -6.107 23.003 -14.017 27.621 Atomic orbital electron populations 1.23951 0.94887 1.02883 0.99794 1.22233 0.95699 0.96157 1.01463 1.20744 1.00261 0.93242 1.02315 1.20794 0.90574 0.94225 0.86242 0.92921 1.21875 1.01883 0.94205 0.98737 1.21120 0.78083 0.89802 0.81020 1.90659 1.62737 1.54428 1.38223 1.48245 1.50114 1.16244 1.19661 1.22008 1.03268 0.91827 0.84312 1.21902 0.99835 0.96783 0.98093 1.21499 0.99695 0.95097 0.98261 1.21823 0.99412 0.96443 0.94631 0.93946 1.20823 0.96523 0.91568 0.88157 1.44099 1.35811 1.48862 1.04996 1.20478 0.88359 0.91894 0.95922 1.19607 1.27618 1.00369 0.89683 0.90030 1.25812 1.02247 0.94988 1.02687 1.70261 1.53844 1.03390 1.31784 0.85233 0.76720 0.78160 0.80582 1.18364 1.22302 1.22407 1.21331 0.97276 0.83728 0.97360 1.87862 1.39283 1.83307 1.19870 1.22461 0.97012 0.96673 0.85356 1.21703 0.98622 1.02809 0.96997 0.88710 0.86298 0.91739 0.90528 0.91471 0.86006 0.85422 0.89803 0.86944 0.88839 0.92716 0.92218 0.92506 0.94526 0.93240 0.97890 0.96601 0.96101 0.94603 0.91474 0.90808 0.94913 0.92741 0.89554 0.91444 0.93422 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.31 13.91 67.78 0.94 -1.37 16 2 C -0.16 -2.31 5.05 -16.49 -0.08 -2.40 16 3 C -0.11 -1.27 9.84 71.23 0.70 -0.57 16 4 C 0.14 2.82 1.86 29.85 0.06 2.87 16 5 H 0.05 1.24 7.25 -2.38 -0.02 1.22 16 6 C -0.13 -2.29 3.56 29.85 0.11 -2.18 16 7 C 0.51 13.66 7.58 87.66 0.66 14.32 16 8 O -0.58 -20.49 14.83 10.75 0.16 -20.33 16 9 N -0.61 -15.33 2.98 -819.66 -2.44 -17.77 16 10 C 0.11 1.91 6.34 86.36 0.55 2.46 16 11 C -0.13 -2.84 6.08 30.67 0.19 -2.65 16 12 C -0.11 -3.35 4.43 30.62 0.14 -3.21 16 13 C -0.10 -3.45 2.53 -10.85 -0.03 -3.48 16 14 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 15 C 0.16 6.36 5.15 86.38 0.45 6.80 16 16 N -0.61 -30.87 2.80 -726.94 -2.03 -32.91 16 17 C 0.18 9.21 8.98 127.77 1.15 10.36 16 18 C -0.24 -12.94 8.16 84.03 0.69 -12.25 16 19 H 0.08 4.12 6.72 -2.91 -0.02 4.10 16 20 C -0.06 -3.54 5.08 84.86 0.43 -3.11 16 21 N -0.94 -56.91 10.72 21.65 0.23 -56.68 16 22 Si 0.96 44.81 29.58 68.60 2.03 46.83 16 23 H -0.26 -11.13 7.11 99.48 0.71 -10.43 16 24 H -0.30 -13.88 7.11 99.48 0.71 -13.18 16 25 H -0.30 -13.94 7.11 99.48 0.71 -13.24 16 26 C 0.13 3.77 5.69 86.23 0.49 4.26 16 27 O -0.38 -9.13 9.07 -135.19 -1.23 -10.35 16 28 C 0.06 1.30 6.46 71.98 0.46 1.77 16 29 C -0.14 -2.56 10.28 71.98 0.74 -1.82 16 30 H 0.09 1.28 7.84 -2.91 -0.02 1.25 16 31 H 0.12 1.13 8.04 -2.91 -0.02 1.10 16 32 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 33 H 0.08 0.65 8.06 -2.39 -0.02 0.63 16 34 H 0.07 0.75 7.02 -2.38 -0.02 0.73 16 35 H 0.12 1.70 6.99 -2.39 -0.02 1.69 16 36 H 0.13 1.69 7.69 -2.39 -0.02 1.67 16 37 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 38 H 0.11 1.27 5.93 -2.39 -0.01 1.26 16 39 H 0.09 1.68 8.14 -2.38 -0.02 1.66 16 40 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 41 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 42 H 0.06 2.19 5.95 -2.38 -0.01 2.17 16 43 H 0.04 1.47 8.07 -2.39 -0.02 1.45 16 44 H 0.05 1.99 8.04 -2.39 -0.02 1.97 16 45 H 0.00 0.16 7.36 -2.39 -0.02 0.14 16 46 H 0.02 0.85 7.31 -2.38 -0.02 0.84 16 47 H 0.02 0.94 8.03 -2.39 -0.02 0.92 16 48 H 0.24 14.36 8.31 -92.71 -0.77 13.59 16 49 H 0.07 2.28 7.01 -2.39 -0.02 2.26 16 50 H 0.07 2.04 8.14 -2.38 -0.02 2.02 16 51 H 0.03 0.80 8.08 -2.39 -0.02 0.78 16 52 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 53 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 54 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 55 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 Total: -1.00 -71.10 425.55 5.18 -65.92 By element: Atomic # 1 Polarization: 14.66 SS G_CDS: 0.83 Total: 15.48 kcal Atomic # 6 Polarization: 2.17 SS G_CDS: 7.63 Total: 9.80 kcal Atomic # 7 Polarization: -103.12 SS G_CDS: -4.24 Total: -107.36 kcal Atomic # 8 Polarization: -29.61 SS G_CDS: -1.07 Total: -30.68 kcal Atomic # 14 Polarization: 44.81 SS G_CDS: 2.03 Total: 46.83 kcal Total: -71.10 5.18 -65.92 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001661213631.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.527 kcal (2) G-P(sol) polarization free energy of solvation -71.097 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.624 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.178 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.919 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.446 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds