Wall clock time and date at job start Tue Mar 31 2020 22:00:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50696 * 120.00080 * 2 1 4 4 C 1.50705 * 119.99411 * 179.97438 * 2 1 3 5 5 H 1.08997 * 109.47463 * 355.00479 * 4 2 1 6 6 C 1.52997 * 109.46849 * 115.00582 * 4 2 1 7 7 C 1.50701 * 109.47459 * 184.99779 * 6 4 2 8 8 O 1.21285 * 119.99730 * 359.97438 * 7 6 4 9 9 N 1.34774 * 120.00363 * 179.97438 * 7 6 4 10 10 C 1.46923 * 120.62951 * 0.02562 * 9 7 6 11 11 C 1.53193 * 108.77671 * 126.39497 * 10 9 7 12 12 C 1.53038 * 109.31447 * 54.62844 * 11 10 9 13 13 C 1.53040 * 109.54222 * 298.64271 * 12 11 10 14 14 H 1.09007 * 109.49148 * 301.41194 * 13 12 11 15 15 C 1.52995 * 109.49772 * 181.34793 * 13 12 11 16 16 N 1.46501 * 109.47052 * 64.99809 * 15 13 12 17 17 C 1.46502 * 120.00030 * 90.00419 * 16 15 13 18 18 C 1.36935 * 119.99869 * 269.99347 * 16 15 13 19 19 H 1.08002 * 120.00175 * 22.11605 * 18 16 15 20 20 C 1.38814 * 120.00223 * 202.11146 * 18 16 15 21 21 N 1.31618 * 119.99720 * 14.14840 * 20 18 16 22 22 Si 1.86799 * 120.00000 * 194.14365 * 20 18 16 23 23 H 1.48497 * 109.46877 * 90.00346 * 22 20 18 24 24 H 1.48504 * 109.47014 * 210.00170 * 22 20 18 25 25 H 1.48494 * 109.47475 * 330.00056 * 22 20 18 26 26 C 1.46927 * 120.62863 * 179.97438 * 9 7 6 27 27 O 1.42896 * 109.46993 * 235.00145 * 4 2 1 28 28 C 1.42901 * 114.00039 * 90.00449 * 27 4 2 29 29 C 1.53000 * 109.47261 * 180.02562 * 28 27 4 30 30 H 1.07998 * 120.00629 * 179.97438 * 1 2 3 31 31 H 1.08003 * 119.99613 * 0.02562 * 1 2 3 32 32 H 1.09000 * 109.47029 * 269.99422 * 3 2 1 33 33 H 1.08991 * 109.47213 * 29.99920 * 3 2 1 34 34 H 1.09010 * 109.46932 * 149.99847 * 3 2 1 35 35 H 1.08997 * 109.47450 * 64.99534 * 6 4 2 36 36 H 1.09007 * 109.47255 * 305.00015 * 6 4 2 37 37 H 1.08999 * 109.59095 * 6.60162 * 10 9 7 38 38 H 1.09003 * 109.58643 * 246.17996 * 10 9 7 39 39 H 1.08997 * 109.49623 * 174.58674 * 11 10 9 40 40 H 1.09004 * 109.49176 * 294.64671 * 11 10 9 41 41 H 1.09003 * 109.45827 * 58.65918 * 12 11 10 42 42 H 1.09002 * 109.46285 * 178.61358 * 12 11 10 43 43 H 1.09000 * 109.47022 * 184.99540 * 15 13 12 44 44 H 1.09001 * 109.47334 * 304.99442 * 15 13 12 45 45 H 1.08993 * 109.47434 * 95.13237 * 17 16 15 46 46 H 1.09007 * 109.46470 * 215.13058 * 17 16 15 47 47 H 1.08993 * 109.47083 * 335.12484 * 17 16 15 48 48 H 0.97002 * 119.99686 * 179.97438 * 21 20 18 49 49 H 1.09002 * 109.58590 * 113.82029 * 26 9 7 50 50 H 1.08996 * 109.58672 * 353.39693 * 26 9 7 51 51 H 1.08997 * 109.46917 * 299.99736 * 28 27 4 52 52 H 1.08999 * 109.47102 * 59.99757 * 28 27 4 53 53 H 1.09000 * 109.47304 * 180.02562 * 29 28 27 54 54 H 1.09002 * 109.47083 * 300.00099 * 29 28 27 55 55 H 1.08999 * 109.47347 * 59.99802 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.0634 -1.3052 0.0006 5 1 1.3585 -2.1317 0.0904 6 6 2.8464 -1.4426 -1.3066 7 6 3.5008 -2.7991 -1.3601 8 8 3.3556 -3.5790 -0.4427 9 7 4.2474 -3.1456 -2.4274 10 6 4.4330 -2.2114 -3.5461 11 6 5.9336 -2.0424 -3.8036 12 6 6.5679 -3.4180 -4.0215 13 6 6.3866 -4.2704 -2.7634 14 1 6.8469 -3.7666 -1.9133 15 6 7.0503 -5.6333 -2.9699 16 7 8.4975 -5.4552 -3.1119 17 6 9.3594 -5.4892 -1.9277 18 6 9.0446 -5.2573 -4.3515 19 1 8.4328 -4.8807 -5.1579 20 6 10.3856 -5.5406 -4.5716 21 7 11.0610 -6.2506 -3.6930 22 14 11.2314 -4.9142 -6.1149 23 1 11.8141 -3.5742 -5.8508 24 1 12.3117 -5.8559 -6.5041 25 1 10.2408 -4.8149 -7.2167 26 6 4.8920 -4.4642 -2.4936 27 8 2.9708 -1.3309 1.1042 28 6 2.4137 -1.8758 2.3021 29 6 3.4676 -1.8532 3.4110 30 1 -0.5401 -0.9352 -0.0004 31 1 -0.5400 0.9354 -0.0004 32 1 2.2453 1.6196 -1.0277 33 1 1.4745 2.0647 0.5138 34 1 3.0160 1.1747 0.5139 35 1 3.6116 -0.6679 -1.3550 36 1 2.1657 -1.3340 -2.1511 37 1 3.9947 -1.2462 -3.2928 38 1 3.9517 -2.6105 -4.4390 39 1 6.0834 -1.4280 -4.6913 40 1 6.3980 -1.5592 -2.9440 41 1 6.0860 -3.9105 -4.8661 42 1 7.6312 -3.2989 -4.2293 43 1 6.8453 -6.2712 -2.1102 44 1 6.6513 -6.0989 -3.8711 45 1 9.7602 -6.4945 -1.7987 46 1 10.1808 -4.7841 -2.0560 47 1 8.7784 -5.2139 -1.0475 48 1 11.9980 -6.4489 -3.8470 49 1 4.4484 -5.0477 -3.3003 50 1 4.7566 -4.9851 -1.5458 51 1 1.5536 -1.2795 2.6067 52 1 2.0978 -2.9032 2.1213 53 1 3.0429 -2.2692 4.3245 54 1 4.3281 -2.4491 3.1066 55 1 3.7831 -0.8256 3.5916 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001661213633.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:00:22 Heat of formation + Delta-G solvation = -69.827362 kcal Electronic energy + Delta-G solvation = -30996.548924 eV Core-core repulsion = 27033.703297 eV Total energy + Delta-G solvation = -3962.845627 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.34283 -39.70454 -38.63720 -37.13078 -36.09017 -34.42342 -32.99088 -32.71736 -31.99957 -30.87644 -28.21900 -28.01153 -27.40592 -26.47904 -24.66144 -23.66925 -23.63575 -22.66491 -20.96773 -19.89663 -19.77021 -18.62606 -17.99888 -17.81009 -17.14387 -16.80168 -16.56937 -16.26007 -15.77842 -15.47660 -15.38909 -15.09408 -14.93488 -14.87624 -14.76478 -14.52481 -14.08643 -14.06082 -13.88973 -13.68710 -13.39793 -13.29252 -13.13222 -12.96360 -12.80232 -12.75921 -12.56124 -12.52500 -12.47993 -12.32636 -12.14614 -11.98052 -11.94025 -11.86051 -11.78748 -11.63380 -11.39105 -11.14955 -10.75886 -10.58576 -10.46350 -10.06725 -9.56585 -8.73686 -7.78133 -5.25581 1.21434 1.47613 1.49024 1.57345 1.68813 2.06938 2.53925 2.80229 3.34749 3.47094 3.67548 3.85870 3.89708 3.93220 4.05091 4.08519 4.15126 4.19842 4.30383 4.33543 4.40140 4.44886 4.48271 4.51101 4.59073 4.61832 4.73143 4.73522 4.80424 4.82111 4.85588 4.86300 4.91047 4.94287 4.96953 5.00025 5.01396 5.06908 5.20457 5.22575 5.23267 5.25790 5.35566 5.58153 5.59966 5.64490 5.65751 5.65881 5.73241 5.84087 6.35277 6.35965 6.50794 7.17742 7.23792 7.90112 8.36625 9.26102 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.017791 B = 0.002497 C = 0.002349 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1573.458826 B =11209.967269 C =11919.622177 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.156 4.156 3 C -0.114 4.114 4 C 0.139 3.861 5 H 0.059 0.941 6 C -0.127 4.127 7 C 0.509 3.491 8 O -0.580 6.580 9 N -0.611 5.611 10 C 0.108 3.892 11 C -0.129 4.129 12 C -0.107 4.107 13 C -0.102 4.102 14 H 0.038 0.962 15 C 0.156 3.844 16 N -0.615 5.615 17 C 0.179 3.821 18 C -0.244 4.244 19 H 0.082 0.918 20 C -0.063 4.063 21 N -0.945 5.945 22 Si 0.965 3.035 23 H -0.289 1.289 24 H -0.300 1.300 25 H -0.263 1.263 26 C 0.127 3.873 27 O -0.388 6.388 28 C 0.063 3.937 29 C -0.146 4.146 30 H 0.099 0.901 31 H 0.118 0.882 32 H 0.080 0.920 33 H 0.070 0.930 34 H 0.055 0.945 35 H 0.113 0.887 36 H 0.135 0.865 37 H 0.111 0.889 38 H 0.088 0.912 39 H 0.094 0.906 40 H 0.050 0.950 41 H 0.062 0.938 42 H 0.055 0.945 43 H 0.036 0.964 44 H 0.051 0.949 45 H 0.004 0.996 46 H 0.015 0.985 47 H 0.019 0.981 48 H 0.245 0.755 49 H 0.078 0.922 50 H 0.066 0.934 51 H 0.057 0.943 52 H 0.036 0.964 53 H 0.088 0.912 54 H 0.043 0.957 55 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.814 16.327 4.899 29.286 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.156 4.156 3 C -0.170 4.170 4 C 0.081 3.919 5 H 0.077 0.923 6 C -0.167 4.167 7 C 0.299 3.701 8 O -0.460 6.460 9 N -0.343 5.343 10 C -0.014 4.014 11 C -0.167 4.167 12 C -0.145 4.145 13 C -0.124 4.124 14 H 0.057 0.943 15 C 0.030 3.970 16 N -0.338 5.338 17 C 0.034 3.966 18 C -0.374 4.374 19 H 0.100 0.900 20 C -0.257 4.257 21 N -0.593 5.593 22 Si 0.794 3.206 23 H -0.216 1.216 24 H -0.227 1.227 25 H -0.187 1.187 26 C 0.003 3.997 27 O -0.308 6.308 28 C -0.013 4.013 29 C -0.204 4.204 30 H 0.117 0.883 31 H 0.136 0.864 32 H 0.099 0.901 33 H 0.089 0.911 34 H 0.074 0.926 35 H 0.131 0.869 36 H 0.153 0.847 37 H 0.130 0.870 38 H 0.106 0.894 39 H 0.112 0.888 40 H 0.068 0.932 41 H 0.080 0.920 42 H 0.074 0.926 43 H 0.054 0.946 44 H 0.069 0.931 45 H 0.022 0.978 46 H 0.033 0.967 47 H 0.037 0.963 48 H 0.054 0.946 49 H 0.096 0.904 50 H 0.085 0.915 51 H 0.075 0.925 52 H 0.054 0.946 53 H 0.106 0.894 54 H 0.062 0.938 55 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -23.546 15.925 5.356 28.925 hybrid contribution 1.101 -0.479 -0.404 1.266 sum -22.445 15.446 4.952 27.692 Atomic orbital electron populations 1.23944 0.94686 1.02987 0.99596 1.22203 0.95762 0.95987 1.01670 1.20766 1.00061 0.93393 1.02824 1.20816 0.90582 0.94391 0.86090 0.92330 1.21877 1.01774 0.93947 0.99066 1.21139 0.78501 0.89712 0.80718 1.90657 1.63121 1.54490 1.37776 1.48252 1.49316 1.16689 1.20042 1.22011 0.96396 0.93924 0.89052 1.21902 0.95392 0.97043 1.02374 1.21495 1.01233 0.95336 0.96431 1.21884 0.94016 0.98372 0.98109 0.94320 1.20826 0.83261 0.93968 0.98973 1.44092 1.01935 1.84276 1.03468 1.20472 0.91903 0.97932 0.86324 1.19584 0.93791 1.34844 0.89185 0.89998 1.25822 0.99196 0.99754 1.00962 1.70262 1.08797 1.41884 1.38333 0.85274 0.78212 0.77067 0.80022 1.21604 1.22739 1.18717 1.21403 0.91732 0.84581 1.01984 1.87883 1.39528 1.83341 1.20036 1.22449 0.96850 0.96832 0.85199 1.21719 0.98700 1.02652 0.97281 0.88304 0.86399 0.90106 0.91146 0.92570 0.86873 0.84680 0.87041 0.89394 0.88792 0.93156 0.91965 0.92619 0.94578 0.93074 0.97810 0.96659 0.96254 0.94600 0.90403 0.91542 0.92498 0.94595 0.89362 0.93825 0.91656 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.07 13.91 67.78 0.94 -1.13 16 2 C -0.16 -2.29 5.05 -16.49 -0.08 -2.37 16 3 C -0.11 -1.43 9.73 71.23 0.69 -0.74 16 4 C 0.14 2.79 1.87 29.85 0.06 2.84 16 5 H 0.06 1.29 7.25 -2.39 -0.02 1.28 16 6 C -0.13 -2.28 3.60 29.85 0.11 -2.17 16 7 C 0.51 13.63 7.58 87.66 0.66 14.30 16 8 O -0.58 -20.46 14.83 10.75 0.16 -20.30 16 9 N -0.61 -15.32 2.97 -819.08 -2.44 -17.75 16 10 C 0.11 1.91 6.34 86.36 0.55 2.46 16 11 C -0.13 -2.94 6.08 30.67 0.19 -2.76 16 12 C -0.11 -3.37 4.43 30.62 0.14 -3.24 16 13 C -0.10 -3.53 2.54 -10.75 -0.03 -3.56 16 14 H 0.04 1.54 8.14 -2.38 -0.02 1.52 16 15 C 0.16 6.42 5.15 86.38 0.45 6.87 16 16 N -0.61 -31.17 2.80 -726.94 -2.03 -33.20 16 17 C 0.18 9.35 8.98 127.77 1.15 10.50 16 18 C -0.24 -13.09 8.16 84.03 0.69 -12.40 16 19 H 0.08 4.15 6.72 -2.91 -0.02 4.13 16 20 C -0.06 -3.56 5.08 84.86 0.43 -3.13 16 21 N -0.94 -57.21 10.72 21.65 0.23 -56.98 16 22 Si 0.97 45.03 29.58 68.60 2.03 47.06 16 23 H -0.29 -13.35 7.11 99.48 0.71 -12.64 16 24 H -0.30 -14.31 7.11 99.48 0.71 -13.60 16 25 H -0.26 -11.39 7.11 99.48 0.71 -10.68 16 26 C 0.13 3.76 5.71 86.33 0.49 4.26 16 27 O -0.39 -9.79 8.76 -135.19 -1.18 -10.98 16 28 C 0.06 1.40 6.46 71.98 0.46 1.86 16 29 C -0.15 -2.92 10.28 71.98 0.74 -2.18 16 30 H 0.10 1.13 7.84 -2.91 -0.02 1.11 16 31 H 0.12 1.01 8.04 -2.91 -0.02 0.99 16 32 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 33 H 0.07 0.74 8.06 -2.39 -0.02 0.72 16 34 H 0.06 0.90 7.72 -2.38 -0.02 0.88 16 35 H 0.11 1.81 7.59 -2.39 -0.02 1.79 16 36 H 0.14 1.52 7.94 -2.38 -0.02 1.50 16 37 H 0.11 1.27 5.93 -2.39 -0.01 1.26 16 38 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 39 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 40 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 41 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 42 H 0.06 2.17 5.95 -2.39 -0.01 2.16 16 43 H 0.04 1.46 8.07 -2.39 -0.02 1.44 16 44 H 0.05 2.05 8.04 -2.39 -0.02 2.03 16 45 H 0.00 0.21 7.36 -2.39 -0.02 0.19 16 46 H 0.01 0.83 7.31 -2.38 -0.02 0.81 16 47 H 0.02 0.89 8.03 -2.39 -0.02 0.87 16 48 H 0.24 14.47 8.31 -92.71 -0.77 13.70 16 49 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 50 H 0.07 2.26 7.00 -2.39 -0.02 2.24 16 51 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 52 H 0.04 0.89 8.08 -2.39 -0.02 0.87 16 53 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 54 H 0.04 1.05 8.14 -2.39 -0.02 1.03 16 55 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 Total: -1.00 -71.97 426.74 5.22 -66.75 By element: Atomic # 1 Polarization: 15.18 SS G_CDS: 0.82 Total: 16.00 kcal Atomic # 6 Polarization: 1.77 SS G_CDS: 7.63 Total: 9.40 kcal Atomic # 7 Polarization: -103.69 SS G_CDS: -4.24 Total: -107.93 kcal Atomic # 8 Polarization: -30.25 SS G_CDS: -1.03 Total: -31.27 kcal Atomic # 14 Polarization: 45.03 SS G_CDS: 2.03 Total: 47.06 kcal Total: -71.97 5.22 -66.75 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001661213633.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.079 kcal (2) G-P(sol) polarization free energy of solvation -71.965 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.044 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.217 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.748 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.827 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds