Wall clock time and date at job start Tue Mar 31 2020 22:00:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50697 * 119.99888 * 2 1 4 4 C 1.50707 * 120.00013 * 179.97438 * 2 1 3 5 5 H 1.08995 * 109.47013 * 355.00382 * 4 2 1 6 6 C 1.52999 * 109.46743 * 115.00112 * 4 2 1 7 7 C 1.50702 * 109.46945 * 184.99760 * 6 4 2 8 8 O 1.21281 * 119.99599 * 0.02562 * 7 6 4 9 9 N 1.34771 * 120.00149 * 180.02562 * 7 6 4 10 10 C 1.46930 * 120.63095 * 0.02562 * 9 7 6 11 11 C 1.53191 * 108.77363 * 233.58809 * 10 9 7 12 12 C 1.53048 * 109.31376 * 305.36191 * 11 10 9 13 13 C 1.53037 * 109.53429 * 61.36488 * 12 11 10 14 14 H 1.09004 * 109.49829 * 58.62743 * 13 12 11 15 15 C 1.53007 * 109.49446 * 178.68101 * 13 12 11 16 16 N 1.46491 * 109.47303 * 295.00380 * 15 13 12 17 17 C 1.46498 * 120.00080 * 269.99500 * 16 15 13 18 18 C 1.36941 * 120.00123 * 90.00270 * 16 15 13 19 19 H 1.07997 * 119.99661 * 20.12632 * 18 16 15 20 20 C 1.38811 * 120.00072 * 200.13259 * 18 16 15 21 21 N 1.31616 * 120.00092 * 15.10123 * 20 18 16 22 22 Si 1.86801 * 119.99789 * 195.09971 * 20 18 16 23 23 H 1.48501 * 109.47098 * 85.00521 * 22 20 18 24 24 H 1.48503 * 109.46711 * 205.00166 * 22 20 18 25 25 H 1.48496 * 109.47189 * 325.00000 * 22 20 18 26 26 C 1.46928 * 120.63082 * 179.72518 * 9 7 6 27 27 O 1.42901 * 109.46913 * 235.00084 * 4 2 1 28 28 C 1.42895 * 113.99829 * 90.00332 * 27 4 2 29 29 C 1.53005 * 109.47353 * 179.97438 * 28 27 4 30 30 H 1.07997 * 120.00150 * 0.02562 * 1 2 3 31 31 H 1.08001 * 119.99679 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47298 * 269.99543 * 3 2 1 33 33 H 1.08997 * 109.47386 * 30.00137 * 3 2 1 34 34 H 1.09003 * 109.47165 * 149.99940 * 3 2 1 35 35 H 1.08997 * 109.47618 * 304.99778 * 6 4 2 36 36 H 1.09003 * 109.46815 * 65.00480 * 6 4 2 37 37 H 1.09002 * 109.58114 * 353.37292 * 10 9 7 38 38 H 1.08994 * 109.58599 * 113.65789 * 10 9 7 39 39 H 1.08996 * 109.50154 * 65.31829 * 11 10 9 40 40 H 1.09006 * 109.49637 * 185.41484 * 11 10 9 41 41 H 1.08997 * 109.46320 * 181.38870 * 12 11 10 42 42 H 1.09001 * 109.45863 * 301.36297 * 12 11 10 43 43 H 1.08998 * 109.46544 * 55.00928 * 15 13 12 44 44 H 1.08998 * 109.46924 * 174.99810 * 15 13 12 45 45 H 1.09003 * 109.46799 * 95.10928 * 17 16 15 46 46 H 1.09002 * 109.47338 * 215.10188 * 17 16 15 47 47 H 1.08992 * 109.47292 * 335.11129 * 17 16 15 48 48 H 0.96999 * 120.00142 * 179.97438 * 21 20 18 49 49 H 1.09003 * 109.58637 * 246.19906 * 26 9 7 50 50 H 1.08999 * 109.58682 * 6.62312 * 26 9 7 51 51 H 1.09004 * 109.47127 * 299.99760 * 28 27 4 52 52 H 1.08999 * 109.47781 * 59.99704 * 28 27 4 53 53 H 1.08998 * 109.47093 * 180.02562 * 29 28 27 54 54 H 1.09003 * 109.46500 * 299.99531 * 29 28 27 55 55 H 1.08999 * 109.46903 * 59.99186 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.0636 -1.3052 0.0006 5 1 1.3587 -2.1316 0.0904 6 6 2.8465 -1.4425 -1.3067 7 6 3.5010 -2.7989 -1.3601 8 8 3.3551 -3.5791 -0.4430 9 7 4.2484 -3.1450 -2.4269 10 6 4.4348 -2.2105 -3.5452 11 6 4.0394 -2.9145 -4.8471 12 6 4.8310 -4.2178 -4.9784 13 6 4.4923 -5.1425 -3.8070 14 1 3.4211 -5.3446 -3.8010 15 6 5.2591 -6.4580 -3.9567 16 7 4.7922 -7.1620 -5.1535 17 6 3.6768 -8.1071 -5.0591 18 6 5.3985 -6.9368 -6.3606 19 1 6.3926 -6.5162 -6.3954 20 6 4.7353 -7.2491 -7.5394 21 7 3.4389 -7.4758 -7.5249 22 14 5.6829 -7.3476 -9.1462 23 1 6.2765 -8.7014 -9.2886 24 1 4.7607 -7.0896 -10.2812 25 1 6.7646 -6.3303 -9.1461 26 6 4.8976 -4.4615 -2.4906 27 8 2.9710 -1.3308 1.1043 28 6 2.4139 -1.8756 2.3021 29 6 3.4682 -1.8541 3.4107 30 1 -0.5400 0.9353 -0.0004 31 1 -0.5400 -0.9353 -0.0004 32 1 2.2452 1.6197 -1.0277 33 1 1.4745 2.0647 0.5138 34 1 3.0159 1.1748 0.5139 35 1 2.1658 -1.3341 -2.1511 36 1 3.6117 -0.6677 -1.3550 37 1 3.8040 -1.3338 -3.3978 38 1 5.4797 -1.9046 -3.5955 39 1 2.9725 -3.1370 -4.8310 40 1 4.2635 -2.2659 -5.6940 41 1 4.5698 -4.7085 -5.9159 42 1 5.8984 -3.9967 -4.9694 43 1 6.3247 -6.2487 -4.0507 44 1 5.0873 -7.0806 -3.0787 45 1 2.7472 -7.5986 -5.3149 46 1 3.8411 -8.9334 -5.7508 47 1 3.6121 -8.4923 -4.0416 48 1 2.9754 -7.6936 -8.3487 49 1 5.9801 -4.3371 -2.4584 50 1 4.5725 -5.0705 -1.6471 51 1 1.5537 -1.2794 2.6067 52 1 2.0981 -2.9031 2.1214 53 1 3.0434 -2.2701 4.3242 54 1 4.3281 -2.4506 3.1058 55 1 3.7844 -0.8267 3.5914 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001661213634.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:00:27 Heat of formation + Delta-G solvation = -69.119986 kcal Electronic energy + Delta-G solvation = -31007.318061 eV Core-core repulsion = 27044.503108 eV Total energy + Delta-G solvation = -3962.814953 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.33625 -39.69108 -38.61505 -37.13663 -36.09384 -34.37508 -33.00947 -32.70858 -31.98666 -30.87385 -28.21861 -27.99173 -27.36328 -26.47126 -24.66075 -23.65741 -23.62621 -22.65549 -20.96037 -19.90420 -19.76553 -18.64535 -18.05310 -17.77093 -17.07083 -16.70612 -16.62191 -16.25348 -15.82854 -15.51552 -15.37790 -15.19827 -14.88636 -14.85230 -14.65677 -14.52125 -14.09815 -14.05877 -13.93697 -13.67546 -13.38548 -13.18325 -13.10307 -13.00781 -12.80734 -12.77987 -12.58697 -12.51937 -12.47891 -12.29646 -12.02701 -11.97122 -11.92899 -11.86604 -11.78840 -11.68299 -11.46654 -11.13742 -10.74504 -10.54054 -10.47012 -10.08172 -9.56266 -8.76567 -7.77370 -5.21460 1.19715 1.47513 1.49938 1.56828 1.68702 2.07017 2.54479 2.77906 3.35874 3.45958 3.68220 3.86505 3.90151 3.92610 4.06643 4.07986 4.15621 4.20464 4.30398 4.35394 4.41521 4.45079 4.46932 4.50407 4.59401 4.62787 4.72619 4.75036 4.81353 4.82611 4.84598 4.87073 4.91349 4.94665 4.96589 5.00828 5.01821 5.07042 5.20178 5.24825 5.26637 5.29523 5.34712 5.55602 5.63030 5.64210 5.68115 5.71941 5.76762 5.82926 6.33025 6.35832 6.50224 7.18608 7.22896 7.91075 8.36226 9.26732 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.019235 B = 0.002448 C = 0.002333 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1455.338982 B =11437.441576 C =12001.152370 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.155 4.155 3 C -0.112 4.112 4 C 0.141 3.859 5 H 0.052 0.948 6 C -0.128 4.128 7 C 0.510 3.490 8 O -0.580 6.580 9 N -0.611 5.611 10 C 0.111 3.889 11 C -0.128 4.128 12 C -0.102 4.102 13 C -0.102 4.102 14 H 0.031 0.969 15 C 0.154 3.846 16 N -0.614 5.614 17 C 0.178 3.822 18 C -0.238 4.238 19 H 0.073 0.927 20 C -0.056 4.056 21 N -0.940 5.940 22 Si 0.960 3.040 23 H -0.291 1.291 24 H -0.299 1.299 25 H -0.266 1.266 26 C 0.126 3.874 27 O -0.383 6.383 28 C 0.061 3.939 29 C -0.144 4.144 30 H 0.119 0.881 31 H 0.094 0.906 32 H 0.080 0.920 33 H 0.070 0.930 34 H 0.061 0.939 35 H 0.125 0.875 36 H 0.122 0.878 37 H 0.111 0.889 38 H 0.087 0.913 39 H 0.045 0.955 40 H 0.089 0.911 41 H 0.051 0.949 42 H 0.060 0.940 43 H 0.055 0.945 44 H 0.047 0.953 45 H 0.000 1.000 46 H 0.018 0.982 47 H 0.023 0.977 48 H 0.244 0.756 49 H 0.078 0.922 50 H 0.068 0.932 51 H 0.054 0.946 52 H 0.032 0.968 53 H 0.086 0.914 54 H 0.047 0.953 55 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.964 19.943 16.103 25.707 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.155 4.155 3 C -0.169 4.169 4 C 0.082 3.918 5 H 0.070 0.930 6 C -0.167 4.167 7 C 0.300 3.700 8 O -0.460 6.460 9 N -0.343 5.343 10 C -0.011 4.011 11 C -0.166 4.166 12 C -0.140 4.140 13 C -0.124 4.124 14 H 0.049 0.951 15 C 0.028 3.972 16 N -0.337 5.337 17 C 0.033 3.967 18 C -0.369 4.369 19 H 0.091 0.909 20 C -0.250 4.250 21 N -0.588 5.588 22 Si 0.790 3.210 23 H -0.218 1.218 24 H -0.226 1.226 25 H -0.191 1.191 26 C 0.003 3.997 27 O -0.302 6.302 28 C -0.016 4.016 29 C -0.201 4.201 30 H 0.137 0.863 31 H 0.112 0.888 32 H 0.099 0.901 33 H 0.089 0.911 34 H 0.080 0.920 35 H 0.142 0.858 36 H 0.140 0.860 37 H 0.129 0.871 38 H 0.105 0.895 39 H 0.064 0.936 40 H 0.107 0.893 41 H 0.070 0.930 42 H 0.078 0.922 43 H 0.073 0.927 44 H 0.065 0.935 45 H 0.018 0.982 46 H 0.037 0.963 47 H 0.041 0.959 48 H 0.054 0.946 49 H 0.096 0.904 50 H 0.087 0.913 51 H 0.072 0.928 52 H 0.051 0.949 53 H 0.105 0.895 54 H 0.066 0.934 55 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -1.923 19.551 16.449 25.623 hybrid contribution -0.305 -0.962 -1.261 1.615 sum -2.228 18.589 15.188 24.108 Atomic orbital electron populations 1.23946 0.94921 1.02848 0.99952 1.22239 0.95688 0.96204 1.01362 1.20764 1.00191 0.93030 1.02881 1.20763 0.90559 0.94224 0.86206 0.93011 1.21862 1.01853 0.94299 0.98682 1.21110 0.78123 0.89802 0.81013 1.90648 1.62763 1.54409 1.38191 1.48261 1.49848 1.16663 1.19562 1.21968 1.03304 0.91707 0.84116 1.21879 0.99491 0.97084 0.98159 1.21371 0.99323 0.94852 0.98442 1.22006 0.98956 0.97019 0.94398 0.95068 1.20949 0.96841 0.91126 0.88314 1.44178 1.38148 1.46312 1.05035 1.20500 0.89813 0.91571 0.94801 1.19386 0.96882 1.36864 0.83722 0.90900 1.25631 0.95890 1.02963 1.00542 1.70257 1.07819 1.54259 1.26421 0.85373 0.77851 0.77902 0.79912 1.21812 1.22624 1.19116 1.21578 0.97200 0.83645 0.97277 1.87853 1.39241 1.83305 1.19829 1.22472 0.97063 0.96675 0.85342 1.21703 0.98598 1.02825 0.96950 0.86280 0.88804 0.90134 0.91111 0.92003 0.85755 0.85964 0.87104 0.89512 0.93616 0.89301 0.93047 0.92170 0.92661 0.93505 0.98205 0.96331 0.95888 0.94648 0.90354 0.91316 0.92767 0.94925 0.89520 0.93365 0.91425 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.57 13.91 67.78 0.94 -1.63 16 2 C -0.15 -2.49 5.05 -16.49 -0.08 -2.58 16 3 C -0.11 -1.41 9.73 71.23 0.69 -0.72 16 4 C 0.14 3.02 1.86 29.85 0.06 3.07 16 5 H 0.05 1.30 7.25 -2.39 -0.02 1.28 16 6 C -0.13 -2.51 3.60 29.85 0.11 -2.40 16 7 C 0.51 14.50 7.58 87.66 0.66 15.16 16 8 O -0.58 -21.15 14.83 10.74 0.16 -20.99 16 9 N -0.61 -16.56 2.97 -818.00 -2.43 -18.98 16 10 C 0.11 2.26 6.34 86.36 0.55 2.81 16 11 C -0.13 -3.42 6.08 30.67 0.19 -3.23 16 12 C -0.10 -3.60 4.76 30.62 0.15 -3.45 16 13 C -0.10 -3.73 2.56 -10.56 -0.03 -3.76 16 14 H 0.03 1.34 8.14 -2.38 -0.02 1.32 16 15 C 0.15 6.21 5.22 86.38 0.45 6.66 16 16 N -0.61 -30.60 2.80 -726.96 -2.04 -32.64 16 17 C 0.18 9.13 9.02 127.77 1.15 10.28 16 18 C -0.24 -12.64 7.59 84.03 0.64 -12.00 16 19 H 0.07 3.74 7.86 -2.91 -0.02 3.71 16 20 C -0.06 -3.08 5.06 84.86 0.43 -2.65 16 21 N -0.94 -55.52 10.66 21.65 0.23 -55.29 16 22 Si 0.96 44.65 29.58 68.60 2.03 46.68 16 23 H -0.29 -13.52 7.11 99.48 0.71 -12.81 16 24 H -0.30 -14.15 7.11 99.48 0.71 -13.45 16 25 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 26 C 0.13 3.92 5.75 86.52 0.50 4.42 16 27 O -0.38 -9.41 8.76 -135.20 -1.18 -10.59 16 28 C 0.06 1.33 6.46 71.98 0.46 1.79 16 29 C -0.14 -2.59 10.28 71.98 0.74 -1.85 16 30 H 0.12 1.27 8.04 -2.91 -0.02 1.25 16 31 H 0.09 1.40 7.84 -2.91 -0.02 1.38 16 32 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 33 H 0.07 0.74 8.06 -2.39 -0.02 0.72 16 34 H 0.06 0.91 7.72 -2.39 -0.02 0.89 16 35 H 0.12 1.94 7.69 -2.39 -0.02 1.92 16 36 H 0.12 1.90 7.84 -2.39 -0.02 1.88 16 37 H 0.11 1.55 5.93 -2.39 -0.01 1.53 16 38 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 39 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 40 H 0.09 2.03 8.14 -2.38 -0.02 2.01 16 41 H 0.05 2.34 6.26 -2.39 -0.01 2.33 16 42 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 43 H 0.06 2.10 8.03 -2.39 -0.02 2.08 16 44 H 0.05 1.78 7.86 -2.39 -0.02 1.76 16 45 H 0.00 -0.02 7.41 -2.39 -0.02 -0.04 16 46 H 0.02 1.00 7.20 -2.39 -0.02 0.98 16 47 H 0.02 1.02 7.83 -2.39 -0.02 1.00 16 48 H 0.24 14.17 8.31 -92.71 -0.77 13.40 16 49 H 0.08 2.17 8.14 -2.39 -0.02 2.16 16 50 H 0.07 2.37 7.00 -2.39 -0.02 2.36 16 51 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 52 H 0.03 0.82 8.08 -2.39 -0.02 0.80 16 53 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 54 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 55 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 Total: -1.00 -69.74 427.55 5.20 -64.54 By element: Atomic # 1 Polarization: 16.52 SS G_CDS: 0.82 Total: 17.34 kcal Atomic # 6 Polarization: 2.31 SS G_CDS: 7.61 Total: 9.92 kcal Atomic # 7 Polarization: -102.67 SS G_CDS: -4.23 Total: -106.90 kcal Atomic # 8 Polarization: -30.55 SS G_CDS: -1.03 Total: -31.58 kcal Atomic # 14 Polarization: 44.65 SS G_CDS: 2.03 Total: 46.68 kcal Total: -69.74 5.20 -64.54 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001661213634.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.578 kcal (2) G-P(sol) polarization free energy of solvation -69.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.315 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.195 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.542 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.120 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds