Wall clock time and date at job start Tue Mar 31 2020 22:44:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42900 * 113.99923 * 2 1 4 4 C 1.52999 * 109.47278 * 179.97438 * 3 2 1 5 5 C 1.52994 * 109.47347 * 180.02562 * 4 3 2 6 6 C 1.53007 * 109.47209 * 180.02562 * 5 4 3 7 7 C 1.50696 * 109.47090 * 184.98435 * 6 5 4 8 8 O 1.21284 * 120.00220 * 4.99978 * 7 6 5 9 9 N 1.34774 * 119.99939 * 184.99992 * 7 6 5 10 10 C 1.46926 * 120.63138 * 353.45928 * 9 7 6 11 11 C 1.53186 * 108.89464 * 126.34005 * 10 9 7 12 12 C 1.53357 * 109.15176 * 54.57992 * 11 10 9 13 13 C 1.53048 * 109.60301 * 298.71048 * 12 11 10 14 14 C 1.46925 * 120.63182 * 173.47494 * 9 7 6 15 15 H 1.09001 * 109.58640 * 113.65677 * 14 9 7 16 16 C 1.53002 * 109.58696 * 353.37927 * 14 9 7 17 17 H 1.09004 * 109.87539 * 56.72044 * 16 14 9 18 18 C 1.54325 * 109.87931 * 295.70723 * 16 14 9 19 19 C 1.55158 * 102.94288 * 218.38915 * 18 16 14 20 20 C 1.54913 * 101.58014 * 35.50239 * 19 18 16 21 21 N 1.47024 * 109.88367 * 177.73786 * 16 14 9 22 22 C 1.36936 * 125.65171 * 298.31420 * 21 16 14 23 23 H 1.08000 * 119.99601 * 4.65910 * 22 21 16 24 24 C 1.38808 * 120.00035 * 184.66245 * 22 21 16 25 25 N 1.31614 * 120.00111 * 4.95845 * 24 22 21 26 26 Si 1.86803 * 119.99885 * 184.95263 * 24 22 21 27 27 H 1.48502 * 109.47110 * 4.99781 * 26 24 22 28 28 H 1.48496 * 109.47039 * 125.00432 * 26 24 22 29 29 H 1.48501 * 109.46932 * 245.00078 * 26 24 22 30 30 H 1.09006 * 109.47325 * 60.00366 * 1 2 3 31 31 H 1.09004 * 109.47049 * 179.97438 * 1 2 3 32 32 H 1.08994 * 109.47467 * 299.99999 * 1 2 3 33 33 H 1.09005 * 109.47132 * 60.00063 * 3 2 1 34 34 H 1.08998 * 109.47197 * 299.99709 * 3 2 1 35 35 H 1.09000 * 109.47106 * 59.99864 * 4 3 2 36 36 H 1.08998 * 109.47034 * 300.00134 * 4 3 2 37 37 H 1.09005 * 109.47119 * 60.00354 * 5 4 3 38 38 H 1.08998 * 109.47141 * 300.00042 * 5 4 3 39 39 H 1.08991 * 109.47097 * 64.97909 * 6 5 4 40 40 H 1.09004 * 109.46634 * 304.98046 * 6 5 4 41 41 H 1.09005 * 109.58492 * 246.19880 * 10 9 7 42 42 H 1.08996 * 109.58471 * 6.47426 * 10 9 7 43 43 H 1.09009 * 109.49719 * 174.65437 * 11 10 9 44 44 H 1.09000 * 109.49864 * 294.75188 * 11 10 9 45 45 H 1.08997 * 109.41598 * 178.67522 * 12 11 10 46 46 H 1.09002 * 109.41927 * 58.74401 * 12 11 10 47 47 H 1.08998 * 109.49322 * 301.42102 * 13 12 11 48 48 H 1.08998 * 109.49514 * 181.32427 * 13 12 11 49 49 H 1.08998 * 110.71936 * 336.74982 * 18 16 14 50 50 H 1.08997 * 110.72086 * 99.84869 * 18 16 14 51 51 H 1.08993 * 111.00732 * 153.57511 * 19 18 16 52 52 H 1.09002 * 111.00497 * 277.39026 * 19 18 16 53 53 H 1.09000 * 110.36662 * 81.82918 * 20 19 18 54 54 H 1.09005 * 110.36821 * 204.04455 * 20 19 18 55 55 H 0.97000 * 119.99885 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 6 4.1577 2.5824 0.0013 6 6 5.6830 2.4616 0.0013 7 6 6.2954 3.8329 0.1254 8 8 5.5853 4.8010 0.2969 9 7 7.6324 3.9835 0.0457 10 6 8.5153 2.8109 -0.0184 11 6 9.4273 2.9428 -1.2421 12 6 10.1648 4.2858 -1.1775 13 6 9.1496 5.4309 -1.2024 14 6 8.2346 5.3234 0.0215 15 1 8.8164 5.4790 0.9300 16 6 7.1317 6.3800 -0.0684 17 1 6.4371 6.2623 0.7634 18 6 6.3766 6.2378 -1.4068 19 6 6.1111 7.7112 -1.8142 20 6 7.3961 8.4109 -1.3055 21 7 7.7242 7.7252 -0.0385 22 6 8.4568 8.2520 0.9915 23 1 8.7046 7.6399 1.8461 24 6 8.8808 9.5726 0.9373 25 7 8.4974 10.3466 -0.0558 26 14 9.9953 10.2514 2.2739 27 1 10.3771 9.1575 3.2029 28 1 11.2175 10.8248 1.6554 29 1 9.2772 11.3115 3.0261 30 1 -0.3634 0.5138 -0.8901 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8899 33 1 1.6885 1.8464 0.8900 34 1 1.6886 1.8464 -0.8900 35 1 3.8574 0.6436 -0.8891 36 1 3.8566 0.6440 0.8908 37 1 3.8357 3.1231 0.8913 38 1 3.8364 3.1235 -0.8887 39 1 6.0108 2.0001 -0.9300 40 1 5.9985 1.8452 0.8431 41 1 9.1221 2.7606 0.8858 42 1 7.9146 1.9056 -0.1060 43 1 10.1501 2.1269 -1.2468 44 1 8.8258 2.9018 -2.1502 45 1 10.8328 4.3740 -2.0343 46 1 10.7462 4.3360 -0.2568 47 1 8.5510 5.3665 -2.1110 48 1 9.6766 6.3847 -1.1802 49 1 6.9988 5.7385 -2.1494 50 1 5.4396 5.6991 -1.2656 51 1 6.0165 7.8065 -2.8958 52 1 5.2270 8.1026 -1.3108 53 1 8.2053 8.2880 -2.0254 54 1 7.2063 9.4692 -1.1262 55 1 8.7940 11.2694 -0.0939 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001661977903.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:44:51 Heat of formation + Delta-G solvation = -59.226332 kcal Electronic energy + Delta-G solvation = -31748.825771 eV Core-core repulsion = 27786.439839 eV Total energy + Delta-G solvation = -3962.385932 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.85326 -39.11965 -38.75705 -38.04230 -35.71780 -34.50891 -33.74339 -32.61942 -31.18258 -30.59565 -28.56059 -27.43774 -26.56982 -25.84045 -24.81921 -23.83932 -22.31214 -22.13121 -21.50899 -20.92596 -19.47129 -18.97391 -17.50798 -17.30297 -17.23872 -16.89085 -16.68723 -16.47527 -16.18731 -15.84360 -15.61817 -15.41040 -15.08407 -14.94766 -14.73839 -14.36195 -14.12681 -13.87624 -13.74249 -13.42837 -13.29153 -13.06587 -12.98881 -12.81160 -12.75793 -12.57256 -12.51800 -12.35487 -12.24144 -12.00711 -11.95670 -11.88329 -11.79492 -11.65198 -11.54620 -11.47485 -11.22794 -11.09076 -11.05998 -10.78219 -10.60126 -9.96566 -9.32044 -8.71367 -7.67095 -5.15902 1.43452 1.44757 1.54566 1.81862 2.12656 2.51933 2.85092 3.34646 3.67580 3.80466 3.93550 3.95522 4.01067 4.03227 4.06069 4.17088 4.25067 4.33888 4.36527 4.38256 4.39882 4.45979 4.47514 4.54463 4.56586 4.58379 4.71298 4.76481 4.80166 4.84374 4.87476 4.89110 4.90334 4.94429 5.03302 5.06931 5.07851 5.13604 5.22026 5.28888 5.30418 5.35776 5.36222 5.47031 5.48714 5.54548 5.65374 5.68745 5.89581 5.92093 6.24023 6.40562 6.70055 7.16850 7.44653 7.87651 8.53259 9.29107 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.013714 B = 0.002905 C = 0.002646 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2041.264892 B = 9637.201015 C =10577.878054 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.415 6.415 3 C 0.055 3.945 4 C -0.107 4.107 5 C -0.096 4.096 6 C -0.126 4.126 7 C 0.491 3.509 8 O -0.557 6.557 9 N -0.607 5.607 10 C 0.101 3.899 11 C -0.124 4.124 12 C -0.118 4.118 13 C -0.113 4.113 14 C 0.148 3.852 15 H 0.037 0.963 16 C 0.159 3.841 17 H 0.050 0.950 18 C -0.106 4.106 19 C -0.137 4.137 20 C 0.142 3.858 21 N -0.611 5.611 22 C -0.218 4.218 23 H 0.071 0.929 24 C -0.071 4.071 25 N -0.948 5.948 26 Si 0.974 3.026 27 H -0.269 1.269 28 H -0.292 1.292 29 H -0.293 1.293 30 H 0.047 0.953 31 H 0.098 0.902 32 H 0.046 0.954 33 H 0.048 0.952 34 H 0.052 0.948 35 H 0.080 0.920 36 H 0.076 0.924 37 H 0.054 0.946 38 H 0.059 0.941 39 H 0.117 0.883 40 H 0.114 0.886 41 H 0.069 0.931 42 H 0.119 0.881 43 H 0.103 0.897 44 H 0.069 0.931 45 H 0.069 0.931 46 H 0.055 0.945 47 H 0.062 0.938 48 H 0.039 0.961 49 H 0.063 0.937 50 H 0.087 0.913 51 H 0.074 0.926 52 H 0.046 0.954 53 H -0.016 1.016 54 H 0.082 0.918 55 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.704 -25.090 -3.617 26.221 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.335 6.335 3 C -0.021 4.021 4 C -0.145 4.145 5 C -0.135 4.135 6 C -0.165 4.165 7 C 0.282 3.718 8 O -0.436 6.436 9 N -0.341 5.341 10 C -0.021 4.021 11 C -0.162 4.162 12 C -0.155 4.155 13 C -0.151 4.151 14 C 0.043 3.957 15 H 0.055 0.945 16 C 0.053 3.947 17 H 0.067 0.933 18 C -0.143 4.143 19 C -0.175 4.175 20 C 0.017 3.983 21 N -0.336 5.336 22 C -0.348 4.348 23 H 0.089 0.911 24 C -0.263 4.263 25 N -0.599 5.599 26 Si 0.803 3.197 27 H -0.194 1.194 28 H -0.219 1.219 29 H -0.221 1.221 30 H 0.066 0.934 31 H 0.116 0.884 32 H 0.064 0.936 33 H 0.066 0.934 34 H 0.070 0.930 35 H 0.099 0.901 36 H 0.094 0.906 37 H 0.073 0.927 38 H 0.078 0.922 39 H 0.135 0.865 40 H 0.133 0.867 41 H 0.087 0.913 42 H 0.137 0.863 43 H 0.121 0.879 44 H 0.088 0.912 45 H 0.088 0.912 46 H 0.074 0.926 47 H 0.080 0.920 48 H 0.058 0.942 49 H 0.081 0.919 50 H 0.106 0.894 51 H 0.093 0.907 52 H 0.064 0.936 53 H 0.002 0.998 54 H 0.100 0.900 55 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -6.868 -24.590 -3.440 25.762 hybrid contribution 0.590 1.641 0.729 1.890 sum -6.278 -22.949 -2.711 23.946 Atomic orbital electron populations 1.22911 0.79808 1.03786 1.00641 1.87809 1.21231 1.28871 1.95587 1.22631 0.94790 0.84174 1.00505 1.21424 0.92412 0.96711 1.03939 1.21156 0.93480 0.96275 1.02558 1.21698 0.95885 0.92760 1.06182 1.21424 0.81714 0.92441 0.76261 1.90683 1.62211 1.41567 1.49162 1.48330 1.06174 1.06848 1.72707 1.22039 0.93293 0.87856 0.98904 1.21942 0.99040 0.97017 0.98212 1.21589 0.97297 0.94701 1.01959 1.21746 0.97352 0.98578 0.97425 1.21523 0.95218 0.82127 0.96866 0.94526 1.21655 0.91537 0.83349 0.98128 0.93256 1.22887 1.00472 0.95760 0.95221 1.22844 0.97998 0.96954 0.99754 1.21957 0.91548 0.99314 0.85463 1.45011 1.61263 1.11732 1.15589 1.19312 1.23799 0.94283 0.97377 0.91109 1.25541 1.03406 0.96630 1.00755 1.69930 1.49947 1.06318 1.33669 0.85061 0.78057 0.78060 0.78522 1.19405 1.21881 1.22076 0.93422 0.88353 0.93583 0.93386 0.92998 0.90113 0.90568 0.92673 0.92198 0.86500 0.86748 0.91258 0.86263 0.87910 0.91228 0.91248 0.92611 0.91970 0.94223 0.91871 0.89445 0.90710 0.93565 0.99795 0.90004 0.94570 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.31 11.01 113.37 1.25 1.56 16 2 O -0.42 -7.68 10.70 -148.98 -1.59 -9.28 16 3 C 0.06 0.92 5.94 71.98 0.43 1.35 16 4 C -0.11 -1.56 5.58 30.59 0.17 -1.39 16 5 C -0.10 -1.75 4.61 30.59 0.14 -1.61 16 6 C -0.13 -2.06 4.05 29.85 0.12 -1.94 16 7 C 0.49 13.61 6.87 87.66 0.60 14.21 16 8 O -0.56 -20.61 9.20 -3.04 -0.03 -20.64 16 9 N -0.61 -16.72 2.94 -795.05 -2.34 -19.06 16 10 C 0.10 1.75 6.35 86.36 0.55 2.30 16 11 C -0.12 -2.07 6.11 30.78 0.19 -1.88 16 12 C -0.12 -2.92 5.89 30.73 0.18 -2.74 16 13 C -0.11 -3.94 4.97 30.67 0.15 -3.78 16 14 C 0.15 5.59 2.68 44.97 0.12 5.71 16 15 H 0.04 1.58 7.78 -2.39 -0.02 1.56 16 16 C 0.16 7.24 2.29 45.34 0.10 7.34 16 17 H 0.05 2.57 5.80 -12.87 -0.07 2.50 16 18 C -0.11 -4.25 4.95 31.78 0.16 -4.10 16 19 C -0.14 -5.98 7.09 31.99 0.23 -5.76 16 20 C 0.14 7.60 6.19 86.79 0.54 8.14 16 21 N -0.61 -33.21 2.65 -667.41 -1.77 -34.98 16 22 C -0.22 -12.76 9.82 84.03 0.82 -11.94 16 23 H 0.07 4.06 7.67 -2.91 -0.02 4.04 16 24 C -0.07 -4.22 5.47 84.86 0.46 -3.76 16 25 N -0.95 -58.75 10.06 21.65 0.22 -58.54 16 26 Si 0.97 47.67 29.56 68.60 2.03 49.69 16 27 H -0.27 -12.49 7.11 99.48 0.71 -11.78 16 28 H -0.29 -14.17 7.11 99.48 0.71 -13.46 16 29 H -0.29 -14.35 7.11 99.48 0.71 -13.64 16 30 H 0.05 0.53 8.14 -2.38 -0.02 0.51 16 31 H 0.10 0.93 8.14 -2.38 -0.02 0.91 16 32 H 0.05 0.52 8.14 -2.39 -0.02 0.51 16 33 H 0.05 0.80 8.14 -2.38 -0.02 0.78 16 34 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 35 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 36 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 37 H 0.05 1.23 7.88 -2.38 -0.02 1.22 16 38 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 39 H 0.12 1.32 7.74 -2.39 -0.02 1.30 16 40 H 0.11 1.37 7.91 -2.38 -0.02 1.35 16 41 H 0.07 1.19 8.14 -2.38 -0.02 1.17 16 42 H 0.12 1.18 5.93 -2.39 -0.01 1.16 16 43 H 0.10 1.12 8.14 -2.38 -0.02 1.10 16 44 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 45 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 46 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 47 H 0.06 2.15 5.67 -2.39 -0.01 2.14 16 48 H 0.04 1.73 7.89 -2.39 -0.02 1.71 16 49 H 0.06 2.35 5.39 -2.39 -0.01 2.34 16 50 H 0.09 3.43 5.65 -2.56 -0.01 3.42 16 51 H 0.07 2.83 8.14 -2.39 -0.02 2.81 16 52 H 0.05 2.08 8.14 -2.39 -0.02 2.06 16 53 H -0.02 -0.88 8.14 -2.39 -0.02 -0.90 16 54 H 0.08 4.98 5.48 -2.38 -0.01 4.97 16 55 H 0.24 14.66 8.31 -92.71 -0.77 13.89 16 Total: -1.00 -74.83 405.65 3.51 -71.31 By element: Atomic # 1 Polarization: 19.00 SS G_CDS: 0.78 Total: 19.78 kcal Atomic # 6 Polarization: -4.52 SS G_CDS: 6.21 Total: 1.69 kcal Atomic # 7 Polarization: -108.69 SS G_CDS: -3.88 Total: -112.57 kcal Atomic # 8 Polarization: -28.29 SS G_CDS: -1.62 Total: -29.91 kcal Atomic # 14 Polarization: 47.67 SS G_CDS: 2.03 Total: 49.69 kcal Total: -74.83 3.51 -71.31 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001661977903.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.085 kcal (2) G-P(sol) polarization free energy of solvation -74.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.741 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.515 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.312 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.226 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds