Wall clock time and date at job start Tue Mar 31 2020 22:44:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42900 * 114.00166 * 2 1 4 4 C 1.53001 * 109.47433 * 179.97438 * 3 2 1 5 5 C 1.53005 * 109.47341 * 180.02562 * 4 3 2 6 6 C 1.52991 * 109.46988 * 179.97438 * 5 4 3 7 7 C 1.50705 * 109.46761 * 183.82201 * 6 5 4 8 8 O 1.21285 * 120.00192 * 5.22477 * 7 6 5 9 9 N 1.34776 * 119.99995 * 185.22494 * 7 6 5 10 10 C 1.46925 * 120.62883 * 357.74473 * 9 7 6 11 11 C 1.53194 * 108.77587 * 233.63188 * 10 9 7 12 12 C 1.53034 * 109.31401 * 305.36783 * 11 10 9 13 13 C 1.53032 * 109.53953 * 61.36374 * 12 11 10 14 14 C 1.46992 * 120.61661 * 177.77558 * 9 7 6 15 15 H 1.08998 * 109.58271 * 246.14554 * 14 9 7 16 16 C 1.53001 * 109.62921 * 6.59365 * 14 9 7 17 17 H 1.09004 * 109.87340 * 306.56383 * 16 14 9 18 18 C 1.54321 * 109.88479 * 67.73728 * 16 14 9 19 19 C 1.55158 * 102.94274 * 141.61009 * 18 16 14 20 20 C 1.54905 * 101.58115 * 324.50081 * 19 18 16 21 21 N 1.47021 * 109.88574 * 185.55019 * 16 14 9 22 22 C 1.36941 * 125.64967 * 61.60080 * 21 16 14 23 23 H 1.08001 * 119.99940 * 327.38307 * 22 21 16 24 24 C 1.38811 * 120.00085 * 147.37828 * 22 21 16 25 25 N 1.31620 * 120.00071 * 158.97916 * 24 22 21 26 26 Si 1.86800 * 119.99749 * 338.97573 * 24 22 21 27 27 H 1.48499 * 109.46928 * 95.20545 * 26 24 22 28 28 H 1.48498 * 109.47301 * 215.20082 * 26 24 22 29 29 H 1.48500 * 109.47484 * 335.20569 * 26 24 22 30 30 H 1.09010 * 109.47075 * 60.00524 * 1 2 3 31 31 H 1.08998 * 109.46940 * 180.02562 * 1 2 3 32 32 H 1.08995 * 109.47499 * 300.00272 * 1 2 3 33 33 H 1.09005 * 109.47257 * 59.99699 * 3 2 1 34 34 H 1.09005 * 109.47100 * 299.99986 * 3 2 1 35 35 H 1.08991 * 109.47267 * 59.99668 * 4 3 2 36 36 H 1.08998 * 109.46832 * 299.99943 * 4 3 2 37 37 H 1.08999 * 109.46901 * 59.99700 * 5 4 3 38 38 H 1.09007 * 109.46621 * 300.00120 * 5 4 3 39 39 H 1.09004 * 109.47342 * 63.82613 * 6 5 4 40 40 H 1.08999 * 109.47478 * 303.82116 * 6 5 4 41 41 H 1.09005 * 109.58214 * 113.84938 * 10 9 7 42 42 H 1.08999 * 109.70832 * 353.48996 * 10 9 7 43 43 H 1.09006 * 109.49620 * 185.41259 * 11 10 9 44 44 H 1.08998 * 109.49552 * 65.32306 * 11 10 9 45 45 H 1.09002 * 109.45981 * 301.34493 * 12 11 10 46 46 H 1.09007 * 109.46082 * 181.38685 * 12 11 10 47 47 H 1.09008 * 109.49756 * 58.59190 * 13 12 11 48 48 H 1.09005 * 109.50163 * 178.65156 * 13 12 11 49 49 H 1.08995 * 110.72391 * 259.97905 * 18 16 14 50 50 H 1.09008 * 110.71727 * 23.25230 * 18 16 14 51 51 H 1.08995 * 111.00439 * 206.42572 * 19 18 16 52 52 H 1.09003 * 111.03406 * 82.59149 * 19 18 16 53 53 H 1.09000 * 110.36892 * 278.16593 * 20 19 18 54 54 H 1.09007 * 110.45761 * 155.89135 * 20 19 18 55 55 H 0.96996 * 119.99502 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1847 0.0006 5 6 4.1578 2.5824 0.0013 6 6 5.6829 2.4616 0.0026 7 6 6.2955 3.8352 0.0979 8 8 5.5858 4.8062 0.2542 9 7 7.6321 3.9846 0.0096 10 6 8.5085 2.8137 -0.1303 11 6 9.5753 2.8624 0.9681 12 6 10.3059 4.2055 0.9049 13 6 9.3101 5.3418 1.1482 14 6 8.2402 5.3221 0.0520 15 1 8.6997 5.5452 -0.9109 16 6 7.1659 6.3656 0.3650 17 1 6.3390 6.2686 -0.3385 18 6 6.6556 6.1765 1.8091 19 6 6.4597 7.6346 2.3021 20 6 7.6341 8.3607 1.5999 21 7 7.7402 7.7162 0.2783 22 6 8.2845 8.2815 -0.8440 23 1 8.7969 7.6630 -1.5659 24 6 8.1774 9.6495 -1.0537 25 7 9.0142 10.2581 -1.8672 26 14 6.8457 10.6267 -0.1813 27 1 7.4021 11.2232 1.0597 28 1 6.3592 11.7081 -1.0752 29 1 5.7173 9.7258 0.1654 30 1 -0.3634 0.5138 -0.8901 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3634 0.5138 0.8899 33 1 1.6885 1.8464 0.8900 34 1 1.6886 1.8464 -0.8900 35 1 3.8574 0.6436 -0.8890 36 1 3.8567 0.6439 0.8909 37 1 3.8357 3.1231 0.8913 38 1 3.8365 3.1236 -0.8888 39 1 6.0101 1.9811 -0.9195 40 1 5.9993 1.8626 0.8565 41 1 8.9898 2.8324 -1.1082 42 1 7.9214 1.9009 -0.0293 43 1 10.2892 2.0524 0.8180 44 1 9.0994 2.7525 1.9425 45 1 10.7608 4.3256 -0.0783 46 1 11.0822 4.2330 1.6697 47 1 8.8368 5.2087 2.1210 48 1 9.8353 6.2967 1.1269 49 1 5.7088 5.6366 1.8159 50 1 7.3993 5.6607 2.4165 51 1 6.5543 7.6964 3.3862 52 1 5.5004 8.0336 1.9723 53 1 8.5566 8.2236 2.1641 54 1 7.4132 9.4222 1.4876 55 1 8.9396 11.2140 -2.0134 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001661977904.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:44:55 Heat of formation + Delta-G solvation = -56.267292 kcal Electronic energy + Delta-G solvation = -31787.048602 eV Core-core repulsion = 27824.790984 eV Total energy + Delta-G solvation = -3962.257618 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.88654 -39.23778 -38.83298 -38.11599 -35.73251 -34.61101 -33.77451 -32.78000 -31.78107 -30.62418 -28.85049 -27.46099 -26.37610 -25.84593 -24.85386 -23.89571 -22.58132 -22.18490 -21.66422 -20.92321 -19.45703 -19.00952 -17.87121 -17.33998 -17.26602 -17.06774 -16.76019 -16.57462 -16.31958 -15.87269 -15.46459 -15.34268 -15.13538 -15.07173 -14.88428 -14.60860 -14.33487 -14.12700 -13.98676 -13.67731 -13.34858 -13.23264 -13.03481 -12.94201 -12.78988 -12.57448 -12.54655 -12.40650 -12.31621 -12.23893 -11.92626 -11.82554 -11.75046 -11.63040 -11.58506 -11.54545 -11.33919 -11.22790 -11.02860 -10.67427 -10.60705 -9.94512 -9.31044 -8.73008 -8.22005 -5.51731 1.23606 1.34074 1.48049 1.81815 2.11089 2.39602 2.84060 3.04047 3.46662 3.69643 3.88904 3.92844 3.97725 4.02369 4.03523 4.09644 4.15005 4.19089 4.33531 4.35633 4.38193 4.41964 4.45125 4.48349 4.53772 4.56452 4.68053 4.70668 4.72431 4.79391 4.84839 4.86217 4.88171 4.89523 4.93750 4.99953 5.03648 5.07536 5.12805 5.17056 5.25716 5.27732 5.34597 5.35091 5.38917 5.46550 5.54315 5.65495 5.83370 5.89157 6.14329 6.23459 6.66289 6.87126 7.43415 7.59148 8.24371 8.99186 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.011464 B = 0.003237 C = 0.002753 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2441.911821 B = 8648.508213 C =10168.770076 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.415 6.415 3 C 0.055 3.945 4 C -0.107 4.107 5 C -0.096 4.096 6 C -0.126 4.126 7 C 0.489 3.511 8 O -0.555 6.555 9 N -0.605 5.605 10 C 0.101 3.899 11 C -0.124 4.124 12 C -0.119 4.119 13 C -0.118 4.118 14 C 0.148 3.852 15 H 0.032 0.968 16 C 0.160 3.840 17 H 0.050 0.950 18 C -0.106 4.106 19 C -0.131 4.131 20 C 0.114 3.886 21 N -0.619 5.619 22 C -0.224 4.224 23 H 0.048 0.952 24 C -0.028 4.028 25 N -0.952 5.952 26 Si 0.947 3.053 27 H -0.278 1.278 28 H -0.309 1.309 29 H -0.270 1.270 30 H 0.045 0.955 31 H 0.098 0.902 32 H 0.047 0.953 33 H 0.051 0.949 34 H 0.048 0.952 35 H 0.076 0.924 36 H 0.080 0.920 37 H 0.061 0.939 38 H 0.052 0.948 39 H 0.110 0.890 40 H 0.121 0.879 41 H 0.065 0.935 42 H 0.120 0.880 43 H 0.100 0.900 44 H 0.073 0.927 45 H 0.049 0.951 46 H 0.073 0.927 47 H 0.074 0.926 48 H 0.044 0.956 49 H 0.096 0.904 50 H 0.075 0.925 51 H 0.095 0.905 52 H 0.049 0.951 53 H 0.034 0.966 54 H 0.018 0.982 55 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.248 -25.370 8.978 28.147 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.335 6.335 3 C -0.021 4.021 4 C -0.145 4.145 5 C -0.134 4.134 6 C -0.165 4.165 7 C 0.280 3.720 8 O -0.434 6.434 9 N -0.339 5.339 10 C -0.021 4.021 11 C -0.161 4.161 12 C -0.157 4.157 13 C -0.156 4.156 14 C 0.043 3.957 15 H 0.050 0.950 16 C 0.055 3.945 17 H 0.068 0.932 18 C -0.144 4.144 19 C -0.170 4.170 20 C -0.011 4.011 21 N -0.346 5.346 22 C -0.353 4.353 23 H 0.066 0.934 24 C -0.223 4.223 25 N -0.598 5.598 26 Si 0.778 3.222 27 H -0.206 1.206 28 H -0.238 1.238 29 H -0.195 1.195 30 H 0.064 0.936 31 H 0.116 0.884 32 H 0.066 0.934 33 H 0.069 0.931 34 H 0.066 0.934 35 H 0.095 0.905 36 H 0.098 0.902 37 H 0.080 0.920 38 H 0.071 0.929 39 H 0.128 0.872 40 H 0.139 0.861 41 H 0.083 0.917 42 H 0.138 0.862 43 H 0.119 0.881 44 H 0.091 0.909 45 H 0.068 0.932 46 H 0.091 0.909 47 H 0.092 0.908 48 H 0.063 0.937 49 H 0.113 0.887 50 H 0.094 0.906 51 H 0.113 0.887 52 H 0.068 0.932 53 H 0.052 0.948 54 H 0.036 0.964 55 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -8.437 -24.882 8.905 27.741 hybrid contribution -0.385 1.893 -0.402 1.973 sum -8.821 -22.989 8.503 26.050 Atomic orbital electron populations 1.22909 0.79826 1.03782 1.00624 1.87809 1.21208 1.28856 1.95582 1.22634 0.94820 0.84181 1.00475 1.21424 0.92378 0.96734 1.03942 1.21152 0.93532 0.96236 1.02520 1.21691 0.95828 0.92820 1.06165 1.21422 0.81793 0.92601 0.76232 1.90676 1.62356 1.41195 1.49222 1.48307 1.06234 1.07088 1.72245 1.22035 0.92737 0.87988 0.99352 1.21875 0.97945 0.97060 0.99264 1.21533 0.97641 0.94834 1.01649 1.21858 0.96425 0.98840 0.98457 1.21432 0.94723 0.82217 0.97378 0.95012 1.21719 0.92055 0.82934 0.97791 0.93209 1.22985 1.02144 0.95379 0.93846 1.22781 0.96930 0.96985 1.00262 1.21964 0.96938 0.95103 0.87064 1.45019 1.70346 1.14086 1.05155 1.18390 1.26506 0.91281 0.99143 0.93440 1.25863 0.99692 0.98073 0.98690 1.69950 1.37543 1.09902 1.42415 0.85752 0.82032 0.77581 0.76852 1.20559 1.23770 1.19519 0.93595 0.88356 0.93441 0.93061 0.93380 0.90529 0.90153 0.92020 0.92922 0.87200 0.86146 0.91663 0.86211 0.88139 0.90877 0.93181 0.90854 0.90763 0.93735 0.88656 0.90641 0.88675 0.93223 0.94844 0.96411 0.92923 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.31 11.01 113.37 1.25 1.56 16 2 O -0.41 -7.58 10.70 -148.98 -1.59 -9.18 16 3 C 0.06 0.91 5.94 71.98 0.43 1.33 16 4 C -0.11 -1.53 5.58 30.60 0.17 -1.36 16 5 C -0.10 -1.71 4.59 30.59 0.14 -1.57 16 6 C -0.13 -1.99 4.06 29.85 0.12 -1.87 16 7 C 0.49 13.05 7.22 87.66 0.63 13.69 16 8 O -0.55 -19.58 8.83 -3.05 -0.03 -19.61 16 9 N -0.61 -16.16 2.95 -794.86 -2.34 -18.51 16 10 C 0.10 1.71 6.29 86.36 0.54 2.25 16 11 C -0.12 -1.94 6.08 30.67 0.19 -1.75 16 12 C -0.12 -2.78 5.88 30.62 0.18 -2.60 16 13 C -0.12 -3.75 4.96 30.67 0.15 -3.60 16 14 C 0.15 5.40 2.71 44.96 0.12 5.52 16 15 H 0.03 1.41 7.40 -2.39 -0.02 1.39 16 16 C 0.16 6.90 2.28 45.34 0.10 7.01 16 17 H 0.05 2.52 5.81 -14.54 -0.08 2.43 16 18 C -0.11 -3.82 5.10 31.78 0.16 -3.65 16 19 C -0.13 -4.93 7.08 31.99 0.23 -4.71 16 20 C 0.11 5.21 6.27 86.85 0.54 5.75 16 21 N -0.62 -31.64 2.37 -668.26 -1.58 -33.22 16 22 C -0.22 -13.51 10.11 84.03 0.85 -12.66 16 23 H 0.05 3.12 7.48 -2.91 -0.02 3.10 16 24 C -0.03 -1.72 5.43 84.86 0.46 -1.26 16 25 N -0.95 -62.18 13.97 21.65 0.30 -61.87 16 26 Si 0.95 50.72 24.85 68.60 1.70 52.43 16 27 H -0.28 -14.23 6.81 99.48 0.68 -13.55 16 28 H -0.31 -16.53 7.11 99.48 0.71 -15.83 16 29 H -0.27 -14.34 7.09 99.48 0.70 -13.63 16 30 H 0.05 0.52 8.14 -2.38 -0.02 0.50 16 31 H 0.10 0.91 8.14 -2.39 -0.02 0.89 16 32 H 0.05 0.52 8.14 -2.39 -0.02 0.50 16 33 H 0.05 0.81 8.14 -2.38 -0.02 0.79 16 34 H 0.05 0.79 8.14 -2.38 -0.02 0.77 16 35 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 36 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 37 H 0.06 1.26 7.92 -2.39 -0.02 1.24 16 38 H 0.05 1.12 8.14 -2.38 -0.02 1.10 16 39 H 0.11 1.32 7.78 -2.38 -0.02 1.31 16 40 H 0.12 1.24 7.85 -2.39 -0.02 1.22 16 41 H 0.07 1.15 8.14 -2.38 -0.02 1.13 16 42 H 0.12 1.14 5.99 -2.39 -0.01 1.12 16 43 H 0.10 1.05 8.14 -2.38 -0.02 1.03 16 44 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 45 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 46 H 0.07 1.52 8.14 -2.38 -0.02 1.50 16 47 H 0.07 2.20 5.52 -2.38 -0.01 2.19 16 48 H 0.04 1.74 7.98 -2.38 -0.02 1.72 16 49 H 0.10 3.41 5.62 -6.77 -0.04 3.38 16 50 H 0.08 2.41 5.19 -2.38 -0.01 2.40 16 51 H 0.09 2.86 8.14 -2.39 -0.02 2.84 16 52 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 53 H 0.03 1.48 8.14 -2.39 -0.02 1.46 16 54 H 0.02 0.89 3.13 -2.38 -0.01 0.89 16 55 H 0.26 16.22 8.31 -92.71 -0.77 15.45 16 Total: -1.00 -77.72 401.52 3.46 -74.26 By element: Atomic # 1 Polarization: 12.89 SS G_CDS: 0.72 Total: 13.62 kcal Atomic # 6 Polarization: -4.19 SS G_CDS: 6.27 Total: 2.08 kcal Atomic # 7 Polarization: -109.98 SS G_CDS: -3.62 Total: -113.60 kcal Atomic # 8 Polarization: -27.17 SS G_CDS: -1.62 Total: -28.79 kcal Atomic # 14 Polarization: 50.72 SS G_CDS: 1.70 Total: 52.43 kcal Total: -77.72 3.46 -74.26 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001661977904.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.994 kcal (2) G-P(sol) polarization free energy of solvation -77.718 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.457 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.261 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.267 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds