Wall clock time and date at job start Tue Mar 31 2020 22:15:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.36939 * 119.99398 * 2 1 4 4 H 1.07999 * 119.99606 * 201.06890 * 3 2 1 5 5 C 1.38813 * 120.00164 * 21.06771 * 3 2 1 6 6 N 1.31618 * 120.00296 * 13.21759 * 5 3 2 7 7 Si 1.86807 * 119.99790 * 193.21327 * 5 3 2 8 8 H 1.48495 * 109.46959 * 90.00202 * 7 5 3 9 9 H 1.48498 * 109.46991 * 210.00404 * 7 5 3 10 10 H 1.48502 * 109.47175 * 330.00240 * 7 5 3 11 11 C 1.46492 * 120.00254 * 179.97438 * 2 1 3 12 12 C 1.53009 * 109.46958 * 90.00047 * 11 2 1 13 13 C 1.53036 * 109.45776 * 174.99913 * 12 11 2 14 14 C 1.53193 * 109.31362 * 181.37164 * 13 12 11 15 15 N 1.46935 * 108.77344 * 305.36716 * 14 13 12 16 16 C 1.34772 * 120.62745 * 233.58235 * 15 14 13 17 17 O 1.21286 * 120.00284 * 359.97438 * 16 15 14 18 18 C 1.50697 * 119.99945 * 179.97438 * 16 15 14 19 19 O 1.42894 * 109.47183 * 180.02562 * 18 16 15 20 20 C 1.42906 * 114.00052 * 180.02562 * 19 18 16 21 21 C 1.52998 * 109.47000 * 179.97438 * 20 19 18 22 22 C 1.54267 * 110.03278 * 292.90555 * 21 20 19 23 23 C 1.54974 * 104.15804 * 217.14139 * 22 21 20 24 24 C 1.54882 * 102.77801 * 37.88692 * 23 22 21 25 25 C 1.53880 * 110.02882 * 175.68654 * 21 20 19 26 26 C 1.46922 * 118.73847 * 53.85839 * 15 14 13 27 27 C 1.53036 * 109.44750 * 295.06228 * 12 11 2 28 28 H 1.09001 * 109.47011 * 275.21841 * 1 2 3 29 29 H 1.09000 * 109.47390 * 35.22218 * 1 2 3 30 30 H 1.09002 * 109.46837 * 155.22116 * 1 2 3 31 31 H 0.96997 * 120.00181 * 179.97438 * 6 5 3 32 32 H 1.09003 * 109.47206 * 330.00160 * 11 2 1 33 33 H 1.08999 * 109.47244 * 209.99658 * 11 2 1 34 34 H 1.09000 * 109.45811 * 55.02527 * 12 11 2 35 35 H 1.09001 * 109.49921 * 61.41834 * 13 12 11 36 36 H 1.09003 * 109.52978 * 301.33986 * 13 12 11 37 37 H 1.09003 * 109.59095 * 185.57744 * 14 13 12 38 38 H 1.09002 * 109.69879 * 65.21963 * 14 13 12 39 39 H 1.08999 * 109.47113 * 299.99887 * 18 16 15 40 40 H 1.08996 * 109.47228 * 59.99748 * 18 16 15 41 41 H 1.09001 * 109.46853 * 299.99847 * 20 19 18 42 42 H 1.09000 * 109.46995 * 59.99634 * 20 19 18 43 43 H 1.08998 * 110.01889 * 54.30125 * 21 20 19 44 44 H 1.08995 * 110.48516 * 335.78004 * 22 21 20 45 45 H 1.08993 * 110.48626 * 98.42898 * 22 21 20 46 46 H 1.09002 * 110.71582 * 279.57168 * 23 22 21 47 47 H 1.08999 * 110.92014 * 156.29930 * 23 22 21 48 48 H 1.09007 * 110.48495 * 203.40642 * 24 23 22 49 49 H 1.08999 * 110.60078 * 80.82167 * 24 23 22 50 50 H 1.09001 * 110.03393 * 238.56857 * 25 21 20 51 51 H 1.08993 * 110.03475 * 359.95410 * 25 21 20 52 52 H 1.09002 * 109.59116 * 65.92485 * 26 15 14 53 53 H 1.08997 * 109.58660 * 186.35064 * 26 15 14 54 54 H 1.09010 * 109.49638 * 298.56969 * 27 12 11 55 55 H 1.08992 * 109.49825 * 58.66758 * 27 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1496 1.1860 0.0000 4 1 3.1755 1.2173 -0.3362 5 6 1.5251 2.3479 0.4321 6 7 0.3813 2.2786 1.0797 7 14 2.3081 4.0101 0.0947 8 1 1.8233 4.5300 -1.2090 9 1 1.9384 4.9598 1.1748 10 1 3.7850 3.8617 0.0501 11 6 2.1976 -1.2686 0.0006 12 6 2.4526 -1.7109 -1.4418 13 6 3.3242 -2.9688 -1.4428 14 6 3.6059 -3.3890 -2.8888 15 7 2.3263 -3.5408 -3.5949 16 6 2.0321 -4.6843 -4.2446 17 8 2.8271 -5.6003 -4.2506 18 6 0.7152 -4.8250 -4.9637 19 8 0.6388 -6.1170 -5.5694 20 6 -0.5773 -6.3542 -6.2813 21 6 -0.5489 -7.7597 -6.8852 22 6 0.5291 -7.8403 -7.9857 23 6 -0.1005 -8.7550 -9.0667 24 6 -1.5889 -8.3269 -9.0532 25 6 -1.8951 -8.0693 -7.5633 26 6 1.3763 -2.4201 -3.5843 27 6 1.1173 -2.0128 -2.1258 28 1 -0.3633 0.0935 1.0234 29 1 -0.3634 0.8395 -0.5927 30 1 -0.3633 -0.9331 -0.4307 31 1 -0.0549 3.0905 1.3819 32 1 1.6085 -2.0281 0.5147 33 1 3.1500 -1.1380 0.5143 34 1 2.9647 -0.9139 -1.9809 35 1 2.8021 -3.7736 -0.9252 36 1 4.2657 -2.7602 -0.9346 37 1 4.1420 -4.3380 -2.8958 38 1 4.2074 -2.6258 -3.3826 39 1 -0.1018 -4.7090 -4.2517 40 1 0.6378 -4.0573 -5.7336 41 1 -1.4214 -6.2694 -5.5969 42 1 -0.6808 -5.6185 -7.0789 43 1 -0.3446 -8.4958 -6.1077 44 1 0.7315 -6.8505 -8.3947 45 1 1.4428 -8.2860 -7.5927 46 1 0.0021 -9.8046 -8.7911 47 1 0.3465 -8.5681 -10.0431 48 1 -2.2197 -9.1276 -9.4394 49 1 -1.7313 -7.4162 -9.6350 50 1 -2.3435 -8.9561 -7.1155 51 1 -2.5688 -7.2186 -7.4615 52 1 1.7987 -1.5777 -4.1322 53 1 0.4408 -2.7296 -4.0504 54 1 0.6160 -2.8267 -1.6019 55 1 0.4880 -1.1232 -2.1040 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001664876133.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:15:10 Heat of formation + Delta-G solvation = -93.568522 kcal Electronic energy + Delta-G solvation = -29959.382497 eV Core-core repulsion = 25995.507375 eV Total energy + Delta-G solvation = -3963.875121 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.31074 -39.76895 -39.00277 -37.78071 -37.06546 -34.57482 -32.84068 -31.97129 -31.43010 -29.62066 -29.29838 -28.09329 -27.64173 -25.25833 -24.90658 -24.03530 -22.53988 -21.55555 -21.43207 -20.65556 -19.92910 -18.66348 -18.42822 -17.56876 -17.34345 -16.99756 -16.82625 -16.30702 -16.00081 -15.75103 -15.57576 -15.50844 -15.21206 -14.92489 -14.72947 -14.41103 -14.25450 -14.18718 -13.80405 -13.62421 -13.41087 -13.28170 -12.84869 -12.79460 -12.76460 -12.47815 -12.37636 -12.18810 -12.11525 -11.97294 -11.93595 -11.90160 -11.86622 -11.83073 -11.69655 -11.48397 -11.32728 -11.30376 -11.20593 -10.74956 -10.64668 -10.57168 -9.69849 -8.70223 -7.77433 -5.24122 1.48222 1.49055 1.52163 1.57422 1.71813 2.53974 2.80268 3.34638 3.49881 3.69558 3.70565 3.73243 3.84992 3.90764 4.01902 4.13988 4.15244 4.17862 4.22640 4.35703 4.39131 4.42131 4.47304 4.51524 4.57576 4.61247 4.69204 4.75626 4.78002 4.81144 4.84800 4.86695 4.91648 4.92021 5.02341 5.06999 5.09957 5.10635 5.15157 5.19484 5.25478 5.31257 5.35618 5.42353 5.47153 5.48664 5.61160 5.63970 5.68586 5.79682 6.10048 6.36993 6.38777 7.10907 7.21057 7.94903 8.37133 9.24991 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.021490 B = 0.001887 C = 0.001818 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1302.646669 B =14833.895287 C =15396.343954 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.179 3.821 2 N -0.615 5.615 3 C -0.251 4.251 4 H 0.070 0.930 5 C -0.057 4.057 6 N -0.942 5.942 7 Si 0.964 3.036 8 H -0.286 1.286 9 H -0.299 1.299 10 H -0.270 1.270 11 C 0.154 3.846 12 C -0.096 4.096 13 C -0.116 4.116 14 C 0.116 3.884 15 N -0.604 5.604 16 C 0.510 3.490 17 O -0.576 6.576 18 C 0.047 3.953 19 O -0.393 6.393 20 C 0.063 3.937 21 C -0.094 4.094 22 C -0.116 4.116 23 C -0.127 4.127 24 C -0.123 4.123 25 C -0.114 4.114 26 C 0.109 3.891 27 C -0.120 4.120 28 H -0.007 1.007 29 H 0.016 0.984 30 H 0.039 0.961 31 H 0.246 0.754 32 H 0.040 0.960 33 H 0.038 0.962 34 H 0.057 0.943 35 H 0.060 0.940 36 H 0.081 0.919 37 H 0.078 0.922 38 H 0.076 0.924 39 H 0.102 0.898 40 H 0.105 0.895 41 H 0.064 0.936 42 H 0.065 0.935 43 H 0.066 0.934 44 H 0.062 0.938 45 H 0.049 0.951 46 H 0.066 0.934 47 H 0.070 0.930 48 H 0.075 0.925 49 H 0.070 0.930 50 H 0.072 0.928 51 H 0.077 0.923 52 H 0.079 0.921 53 H 0.109 0.891 54 H 0.061 0.939 55 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.485 -18.625 -19.354 27.232 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 N -0.339 5.339 3 C -0.382 4.382 4 H 0.088 0.912 5 C -0.252 4.252 6 N -0.589 5.589 7 Si 0.793 3.207 8 H -0.213 1.213 9 H -0.226 1.226 10 H -0.195 1.195 11 C 0.029 3.971 12 C -0.117 4.117 13 C -0.155 4.155 14 C -0.006 4.006 15 N -0.338 5.338 16 C 0.299 3.701 17 O -0.456 6.456 18 C -0.032 4.032 19 O -0.313 6.313 20 C -0.013 4.013 21 C -0.112 4.112 22 C -0.154 4.154 23 C -0.164 4.164 24 C -0.160 4.160 25 C -0.152 4.152 26 C -0.012 4.012 27 C -0.158 4.158 28 H 0.012 0.988 29 H 0.035 0.965 30 H 0.057 0.943 31 H 0.055 0.945 32 H 0.059 0.941 33 H 0.056 0.944 34 H 0.076 0.924 35 H 0.079 0.921 36 H 0.099 0.901 37 H 0.097 0.903 38 H 0.094 0.906 39 H 0.120 0.880 40 H 0.123 0.877 41 H 0.082 0.918 42 H 0.083 0.917 43 H 0.084 0.916 44 H 0.081 0.919 45 H 0.068 0.932 46 H 0.085 0.915 47 H 0.089 0.911 48 H 0.093 0.907 49 H 0.089 0.911 50 H 0.091 0.909 51 H 0.095 0.905 52 H 0.097 0.903 53 H 0.127 0.873 54 H 0.080 0.920 55 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -4.024 -19.123 -19.266 27.443 hybrid contribution 0.262 1.459 0.516 1.569 sum -3.762 -17.665 -18.751 26.034 Atomic orbital electron populations 1.20591 0.82761 0.96107 0.97146 1.44112 1.02062 1.01492 1.86203 1.19504 0.97252 0.86409 1.35023 0.91212 1.25702 0.98603 1.01537 0.99311 1.70249 1.19736 1.26988 1.41977 0.85303 0.78343 0.80256 0.76781 1.21311 1.22622 1.19509 1.20907 0.95149 0.86597 0.94487 1.21602 0.95964 0.96191 0.97973 1.21822 1.00694 0.97255 0.95703 1.21578 0.84834 1.02039 0.92180 1.48189 1.19452 1.14607 1.51586 1.20826 0.88887 0.81488 0.78875 1.90676 1.51812 1.40561 1.62534 1.22334 0.94808 0.87607 0.98472 1.87977 1.40276 1.32358 1.70646 1.22927 0.85713 0.97350 0.95262 1.21790 0.96514 0.95342 0.97572 1.22363 0.97454 0.99983 0.95612 1.22547 0.95974 0.99271 0.98619 1.22369 0.95937 1.01753 0.95972 1.22129 0.95212 1.02358 0.95504 1.22061 0.93153 0.88544 0.97472 1.21972 0.97601 1.01287 0.94903 0.98834 0.96543 0.94290 0.94512 0.94114 0.94389 0.92408 0.92109 0.90078 0.90333 0.90611 0.88007 0.87699 0.91773 0.91675 0.91588 0.91910 0.93225 0.91545 0.91101 0.90663 0.91139 0.90899 0.90478 0.90294 0.87332 0.92008 0.90880 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 8.39 7.86 127.77 1.00 9.39 16 2 N -0.62 -29.20 2.75 -726.91 -2.00 -31.20 16 3 C -0.25 -13.32 9.67 84.03 0.81 -12.50 16 4 H 0.07 3.60 7.86 -2.91 -0.02 3.57 16 5 C -0.06 -3.14 5.10 84.86 0.43 -2.71 16 6 N -0.94 -55.09 10.61 21.65 0.23 -54.86 16 7 Si 0.96 44.39 29.57 68.60 2.03 46.42 16 8 H -0.29 -12.94 7.11 99.48 0.71 -12.23 16 9 H -0.30 -14.04 7.11 99.48 0.71 -13.33 16 10 H -0.27 -11.86 7.11 99.48 0.71 -11.16 16 11 C 0.15 5.85 5.14 86.38 0.44 6.29 16 12 C -0.10 -2.89 2.36 -10.77 -0.03 -2.91 16 13 C -0.12 -2.94 5.36 30.67 0.16 -2.78 16 14 C 0.12 2.86 6.43 86.36 0.56 3.41 16 15 N -0.60 -14.36 2.97 -818.04 -2.43 -16.78 16 16 C 0.51 13.58 7.77 87.66 0.68 14.26 16 17 O -0.58 -20.64 15.91 15.99 0.25 -20.39 16 18 C 0.05 0.89 4.76 71.24 0.34 1.22 16 19 O -0.39 -9.10 9.71 -129.94 -1.26 -10.36 16 20 C 0.06 0.98 4.98 71.98 0.36 1.34 16 21 C -0.09 -1.44 3.19 -10.07 -0.03 -1.47 16 22 C -0.12 -1.91 6.22 31.70 0.20 -1.71 16 23 C -0.13 -1.55 6.91 31.91 0.22 -1.33 16 24 C -0.12 -1.21 6.83 31.67 0.22 -0.99 16 25 C -0.11 -1.21 6.46 31.32 0.20 -1.01 16 26 C 0.11 2.20 6.37 86.51 0.55 2.75 16 27 C -0.12 -3.12 4.42 30.82 0.14 -2.99 16 28 H -0.01 -0.35 7.38 -2.39 -0.02 -0.37 16 29 H 0.02 0.82 7.22 -2.39 -0.02 0.80 16 30 H 0.04 1.50 6.20 -2.39 -0.01 1.48 16 31 H 0.25 14.05 8.31 -92.71 -0.77 13.28 16 32 H 0.04 1.48 8.07 -2.39 -0.02 1.46 16 33 H 0.04 1.48 8.04 -2.39 -0.02 1.46 16 34 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 35 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 36 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 37 H 0.08 2.12 7.01 -2.39 -0.02 2.11 16 38 H 0.08 1.73 8.14 -2.39 -0.02 1.72 16 39 H 0.10 1.46 7.70 -2.39 -0.02 1.44 16 40 H 0.11 1.39 7.93 -2.39 -0.02 1.37 16 41 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 42 H 0.07 0.81 8.02 -2.39 -0.02 0.79 16 43 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 44 H 0.06 1.05 7.77 -2.39 -0.02 1.03 16 45 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 46 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 47 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 48 H 0.07 0.60 8.14 -2.38 -0.02 0.58 16 49 H 0.07 0.63 8.14 -2.39 -0.02 0.62 16 50 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 51 H 0.08 0.66 7.67 -2.39 -0.02 0.64 16 52 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 53 H 0.11 1.51 5.93 -2.39 -0.01 1.49 16 54 H 0.06 1.58 8.14 -2.38 -0.02 1.56 16 55 H 0.07 2.21 5.87 -2.39 -0.01 2.20 16 Total: -1.00 -70.25 417.65 3.91 -66.34 By element: Atomic # 1 Polarization: 11.75 SS G_CDS: 0.83 Total: 12.57 kcal Atomic # 6 Polarization: 2.00 SS G_CDS: 6.26 Total: 8.26 kcal Atomic # 7 Polarization: -98.65 SS G_CDS: -4.19 Total: -102.85 kcal Atomic # 8 Polarization: -29.74 SS G_CDS: -1.01 Total: -30.75 kcal Atomic # 14 Polarization: 44.39 SS G_CDS: 2.03 Total: 46.42 kcal Total: -70.25 3.91 -66.34 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001664876133.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.228 kcal (2) G-P(sol) polarization free energy of solvation -70.254 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.483 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.914 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.340 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.569 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds