Wall clock time and date at job start Tue Mar 31 2020 22:35:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42895 * 113.99994 * 2 1 4 4 C 1.53002 * 109.47326 * 184.70234 * 3 2 1 5 5 C 1.53002 * 115.54579 * 37.21244 * 4 3 2 6 6 C 1.50697 * 109.47530 * 65.42746 * 5 4 3 7 7 O 1.21282 * 119.99703 * 5.44325 * 6 5 4 8 8 N 1.34776 * 120.00151 * 185.44590 * 6 5 4 9 9 C 1.46494 * 119.99905 * 185.20840 * 8 6 5 10 10 H 1.09007 * 109.47185 * 340.67989 * 9 8 6 11 11 C 1.53003 * 109.47360 * 220.68282 * 9 8 6 12 12 N 1.46504 * 109.46815 * 55.00048 * 11 9 8 13 13 C 1.36944 * 119.99615 * 180.02562 * 12 11 9 14 14 H 1.07995 * 120.00186 * 359.97438 * 13 12 11 15 15 C 1.38816 * 119.99754 * 179.97438 * 13 12 11 16 16 N 1.31623 * 119.99898 * 0.02562 * 15 13 12 17 17 Si 1.86789 * 119.99794 * 179.97438 * 15 13 12 18 18 H 1.48500 * 109.47391 * 60.00185 * 17 15 13 19 19 H 1.48503 * 109.47196 * 179.97438 * 17 15 13 20 20 H 1.48503 * 109.47571 * 299.99752 * 17 15 13 21 21 C 1.52996 * 109.47420 * 100.68167 * 9 8 6 22 22 C 1.52997 * 109.46910 * 54.50979 * 21 9 8 23 23 C 1.53000 * 109.47474 * 180.02562 * 22 21 9 24 24 C 1.53001 * 109.47217 * 59.99753 * 23 22 21 25 25 C 1.53006 * 109.47116 * 300.00693 * 24 23 22 26 26 C 1.52996 * 109.47062 * 294.51344 * 21 9 8 27 27 C 1.52997 * 117.49801 * 251.50645 * 4 3 2 28 28 C 1.52990 * 117.50168 * 182.88348 * 4 3 2 29 29 H 1.09005 * 109.47348 * 295.26598 * 1 2 3 30 30 H 1.09001 * 109.47367 * 55.26972 * 1 2 3 31 31 H 1.09010 * 109.47202 * 175.27085 * 1 2 3 32 32 H 1.08998 * 109.47123 * 304.70073 * 3 2 1 33 33 H 1.08998 * 109.47161 * 64.69919 * 3 2 1 34 34 H 1.09004 * 109.46737 * 185.43043 * 5 4 3 35 35 H 1.09000 * 109.47286 * 305.42091 * 5 4 3 36 36 H 0.97000 * 119.99996 * 5.21059 * 8 6 5 37 37 H 1.08993 * 109.47300 * 174.99971 * 11 9 8 38 38 H 1.08997 * 109.47130 * 295.00152 * 11 9 8 39 39 H 0.97001 * 120.00392 * 359.97438 * 12 11 9 40 40 H 0.97001 * 119.99799 * 180.02562 * 16 15 13 41 41 H 1.09002 * 109.47486 * 174.51187 * 21 9 8 42 42 H 1.09002 * 109.47216 * 300.00374 * 22 21 9 43 43 H 1.09004 * 109.47493 * 60.00279 * 22 21 9 44 44 H 1.09002 * 109.46957 * 300.00229 * 23 22 21 45 45 H 1.09000 * 109.47349 * 180.02562 * 23 22 21 46 46 H 1.08994 * 109.47691 * 180.02562 * 24 23 22 47 47 H 1.09002 * 109.46768 * 60.00360 * 24 23 22 48 48 H 1.09004 * 109.46529 * 299.99375 * 25 24 23 49 49 H 1.09001 * 109.47101 * 180.02562 * 25 24 23 50 50 H 1.09000 * 109.47276 * 299.99645 * 26 21 9 51 51 H 1.08995 * 109.47483 * 59.99648 * 26 21 9 52 52 H 1.09000 * 117.49928 * 359.97438 * 27 4 3 53 53 H 1.09000 * 117.49865 * 145.01841 * 27 4 3 54 54 H 1.09003 * 117.50048 * 214.97485 * 28 4 3 55 55 H 1.09001 * 117.50318 * 359.97438 * 28 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5310 1.1866 -0.1183 5 6 4.0364 0.0678 -1.0313 6 6 3.6301 0.3577 -2.4533 7 8 3.0857 1.4064 -2.7266 8 7 3.8718 -0.5485 -3.4212 9 6 3.5818 -0.2216 -4.8195 10 1 2.8833 0.6143 -4.8599 11 6 2.9615 -1.4381 -5.5096 12 7 1.7847 -1.8794 -4.7567 13 6 1.0619 -2.9598 -5.1874 14 1 1.3591 -3.4863 -6.0823 15 6 -0.0528 -3.3783 -4.4737 16 7 -0.4152 -2.7363 -3.3834 17 14 -1.0391 -4.8515 -5.0616 18 1 -0.1643 -6.0510 -5.0964 19 1 -2.1715 -5.0922 -4.1315 20 1 -1.5655 -4.5832 -6.4241 21 6 4.8793 0.1630 -5.5331 22 6 5.9080 -0.9560 -5.3590 23 6 7.2059 -0.5712 -6.0720 24 6 7.7542 0.7239 -5.4695 25 6 6.7254 1.8429 -5.6436 26 6 5.4278 1.4582 -4.9310 27 6 4.3639 1.5178 1.1216 28 6 4.3466 2.4800 -0.0678 29 1 -0.3634 0.4386 0.9294 30 1 -0.3634 0.5855 -0.8446 31 1 -0.3634 -1.0243 -0.0847 32 1 1.6235 1.8753 -0.8449 33 1 1.7567 1.8160 0.9291 34 1 5.1231 0.0105 -0.9684 35 1 3.6037 -0.8817 -0.7162 36 1 4.2377 -1.4171 -3.1921 37 1 2.6643 -1.1686 -6.5231 38 1 3.6922 -2.2459 -5.5480 39 1 1.5180 -1.4067 -3.9527 40 1 -1.1939 -3.0289 -2.8844 41 1 4.6801 0.3115 -6.5944 42 1 6.1072 -1.1045 -4.2977 43 1 5.5173 -1.8788 -5.7879 44 1 7.0070 -0.4224 -7.1334 45 1 7.9386 -1.3687 -5.9484 46 1 8.6785 0.9983 -5.9777 47 1 7.9531 0.5751 -4.4082 48 1 6.5266 1.9917 -6.7050 49 1 7.1162 2.7657 -5.2148 50 1 4.6950 2.2554 -5.0550 51 1 5.6271 1.3097 -3.8698 52 1 3.8285 1.8207 2.0214 53 1 5.2723 0.9385 1.2872 54 1 5.2437 2.5337 -0.6847 55 1 3.7999 3.4157 0.0492 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001667134966.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:35:58 Heat of formation + Delta-G solvation = -89.937631 kcal Electronic energy + Delta-G solvation = -32055.526580 eV Core-core repulsion = 28091.808906 eV Total energy + Delta-G solvation = -3963.717674 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.30569 -39.91979 -38.74357 -37.54611 -36.95273 -35.22074 -33.08836 -32.12424 -31.58325 -30.26148 -28.91279 -28.29923 -26.36859 -25.56984 -23.92344 -23.28137 -23.01153 -22.32286 -21.24228 -20.29955 -20.05319 -19.14354 -17.91017 -17.42002 -17.08793 -16.87221 -16.70155 -16.38218 -16.17197 -15.80933 -15.33943 -15.18340 -15.13724 -14.81846 -14.77071 -14.66940 -14.47451 -14.33994 -13.77833 -13.43211 -13.34664 -13.21987 -13.01201 -12.91848 -12.75153 -12.58052 -12.51367 -12.31519 -12.22925 -12.04906 -12.00395 -11.91131 -11.86551 -11.76221 -11.29831 -11.28780 -11.11922 -10.94787 -10.94298 -10.75306 -10.65361 -10.25002 -9.72607 -8.94656 -7.88683 -5.18375 1.47095 1.49853 1.55690 1.90569 2.35534 2.57534 2.76882 3.06824 3.43226 3.63597 3.76915 3.82316 3.88019 3.89624 4.03331 4.06958 4.16588 4.22828 4.28601 4.33303 4.36272 4.49525 4.50707 4.54043 4.55245 4.62528 4.65495 4.69969 4.70912 4.77299 4.82087 4.83346 4.87660 4.90690 4.94120 4.98160 5.08065 5.10262 5.16330 5.18741 5.26693 5.29431 5.30883 5.32663 5.37078 5.44609 5.51924 5.55556 5.63008 5.78561 6.27634 6.30221 6.77255 7.37280 7.50829 8.12851 8.37010 9.33045 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.007028 B = 0.005198 C = 0.003173 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3983.315187 B = 5384.893689 C = 8823.605873 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.043 3.957 2 O -0.402 6.402 3 C 0.100 3.900 4 C -0.126 4.126 5 C -0.091 4.091 6 C 0.520 3.480 7 O -0.574 6.574 8 N -0.705 5.705 9 C 0.152 3.848 10 H 0.058 0.942 11 C 0.143 3.857 12 N -0.740 5.740 13 C -0.247 4.247 14 H 0.074 0.926 15 C -0.070 4.070 16 N -0.959 5.959 17 Si 0.970 3.030 18 H -0.277 1.277 19 H -0.297 1.297 20 H -0.282 1.282 21 C -0.083 4.083 22 C -0.111 4.111 23 C -0.114 4.114 24 C -0.114 4.114 25 C -0.114 4.114 26 C -0.098 4.098 27 C -0.149 4.149 28 C -0.152 4.152 29 H 0.062 0.938 30 H 0.023 0.977 31 H 0.076 0.924 32 H 0.033 0.967 33 H 0.061 0.939 34 H 0.118 0.882 35 H 0.091 0.909 36 H 0.404 0.596 37 H 0.024 0.976 38 H 0.040 0.960 39 H 0.373 0.627 40 H 0.248 0.752 41 H 0.077 0.923 42 H 0.063 0.937 43 H 0.061 0.939 44 H 0.062 0.938 45 H 0.070 0.930 46 H 0.072 0.928 47 H 0.059 0.941 48 H 0.062 0.938 49 H 0.064 0.936 50 H 0.039 0.961 51 H 0.051 0.949 52 H 0.105 0.895 53 H 0.114 0.886 54 H 0.100 0.900 55 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.630 8.955 4.657 20.315 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 O -0.321 6.321 3 C 0.024 3.976 4 C -0.126 4.126 5 C -0.131 4.131 6 C 0.308 3.692 7 O -0.454 6.454 8 N -0.356 5.356 9 C 0.046 3.954 10 H 0.076 0.924 11 C 0.016 3.984 12 N -0.382 5.382 13 C -0.379 4.379 14 H 0.092 0.908 15 C -0.263 4.263 16 N -0.609 5.609 17 Si 0.799 3.201 18 H -0.203 1.203 19 H -0.224 1.224 20 H -0.208 1.208 21 C -0.103 4.103 22 C -0.149 4.149 23 C -0.152 4.152 24 C -0.151 4.151 25 C -0.152 4.152 26 C -0.135 4.135 27 C -0.186 4.186 28 C -0.189 4.189 29 H 0.080 0.920 30 H 0.042 0.958 31 H 0.094 0.906 32 H 0.051 0.949 33 H 0.079 0.921 34 H 0.136 0.864 35 H 0.109 0.891 36 H 0.239 0.761 37 H 0.041 0.959 38 H 0.058 0.942 39 H 0.205 0.795 40 H 0.057 0.943 41 H 0.096 0.904 42 H 0.082 0.918 43 H 0.080 0.920 44 H 0.080 0.920 45 H 0.089 0.911 46 H 0.090 0.910 47 H 0.078 0.922 48 H 0.081 0.919 49 H 0.082 0.918 50 H 0.058 0.942 51 H 0.070 0.930 52 H 0.123 0.877 53 H 0.132 0.868 54 H 0.118 0.882 55 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 17.327 9.401 4.330 20.183 hybrid contribution -1.624 -0.798 -0.083 1.811 sum 15.703 8.603 4.248 18.402 Atomic orbital electron populations 1.22630 0.80413 1.02552 0.99707 1.87816 1.20337 1.28560 1.95387 1.21989 0.91974 0.84280 0.99352 1.20911 0.91546 0.98574 1.01596 1.21042 1.02802 0.99695 0.89575 1.20904 0.77208 0.83288 0.87819 1.90612 1.43380 1.27501 1.83897 1.45781 1.65532 1.17962 1.06323 1.21009 0.96379 0.96696 0.81268 0.92375 1.21165 0.88666 0.94543 0.93981 1.42482 1.30393 1.34967 1.30392 1.19550 1.06057 1.05341 1.06972 0.90767 1.25511 1.00244 1.02426 0.98114 1.69857 1.28288 1.43547 1.19245 0.85275 0.78034 0.79808 0.76951 1.20286 1.22368 1.20831 1.21399 0.93377 0.96123 0.99375 1.21572 0.94977 0.97163 1.01140 1.21507 0.96327 0.97636 0.99702 1.21505 0.97988 0.94580 1.01057 1.21509 0.94714 0.98505 1.00466 1.21362 0.96943 0.95822 0.99411 1.23277 1.01647 1.01923 0.91730 1.22942 1.01287 0.93195 1.01503 0.91979 0.95780 0.90556 0.94861 0.92088 0.86430 0.89097 0.76078 0.95861 0.94182 0.79493 0.94280 0.90445 0.91790 0.92047 0.91961 0.91095 0.90970 0.92218 0.91911 0.91773 0.94214 0.93047 0.87666 0.86786 0.88200 0.88794 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.50 11.01 113.37 1.25 2.75 16 2 O -0.40 -14.82 9.67 -148.98 -1.44 -16.26 16 3 C 0.10 3.15 5.53 71.98 0.40 3.54 16 4 C -0.13 -3.30 1.46 -52.18 -0.08 -3.38 16 5 C -0.09 -2.50 5.23 29.85 0.16 -2.35 16 6 C 0.52 17.61 6.44 87.66 0.56 18.18 16 7 O -0.57 -23.18 14.23 -3.04 -0.04 -23.22 16 8 N -0.71 -22.77 3.33 -442.54 -1.47 -24.24 16 9 C 0.15 5.20 2.11 44.99 0.10 5.30 16 10 H 0.06 2.42 7.09 -2.38 -0.02 2.40 16 11 C 0.14 5.73 5.79 86.38 0.50 6.23 16 12 N -0.74 -38.25 5.43 -343.45 -1.87 -40.11 16 13 C -0.25 -13.94 9.99 84.03 0.84 -13.10 16 14 H 0.07 3.99 7.83 -2.91 -0.02 3.97 16 15 C -0.07 -4.06 5.50 84.86 0.47 -3.59 16 16 N -0.96 -59.26 13.06 21.65 0.28 -58.98 16 17 Si 0.97 46.64 29.55 68.60 2.03 48.66 16 18 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 19 H -0.30 -14.44 7.11 99.48 0.71 -13.73 16 20 H -0.28 -13.18 7.11 99.48 0.71 -12.47 16 21 C -0.08 -2.16 2.01 -10.80 -0.02 -2.18 16 22 C -0.11 -2.43 4.70 30.59 0.14 -2.29 16 23 C -0.11 -2.01 5.92 30.59 0.18 -1.82 16 24 C -0.11 -1.88 5.92 30.60 0.18 -1.70 16 25 C -0.11 -2.20 5.92 30.58 0.18 -2.01 16 26 C -0.10 -2.44 4.88 30.58 0.15 -2.29 16 27 C -0.15 -2.76 9.86 30.59 0.30 -2.46 16 28 C -0.15 -3.27 9.86 30.59 0.30 -2.97 16 29 H 0.06 1.69 8.14 -2.38 -0.02 1.67 16 30 H 0.02 0.89 8.12 -2.39 -0.02 0.87 16 31 H 0.08 2.83 8.14 -2.38 -0.02 2.81 16 32 H 0.03 1.23 7.23 -2.39 -0.02 1.21 16 33 H 0.06 1.60 7.92 -2.39 -0.02 1.58 16 34 H 0.12 2.37 8.09 -2.38 -0.02 2.35 16 35 H 0.09 2.76 7.55 -2.39 -0.02 2.74 16 36 H 0.40 12.08 8.25 -92.71 -0.76 11.31 16 37 H 0.02 0.96 8.14 -2.39 -0.02 0.94 16 38 H 0.04 1.50 6.36 -2.39 -0.02 1.49 16 39 H 0.37 21.27 7.33 -92.71 -0.68 20.59 16 40 H 0.25 14.95 8.31 -92.71 -0.77 14.18 16 41 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 42 H 0.06 1.37 7.17 -2.39 -0.02 1.36 16 43 H 0.06 1.44 6.48 -2.38 -0.02 1.43 16 44 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 45 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 46 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 47 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 48 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 49 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 50 H 0.04 1.16 8.14 -2.39 -0.02 1.14 16 51 H 0.05 1.36 6.92 -2.39 -0.02 1.34 16 52 H 0.10 1.74 8.07 -2.39 -0.02 1.72 16 53 H 0.11 1.69 8.14 -2.39 -0.02 1.67 16 54 H 0.10 2.03 8.14 -2.39 -0.02 2.01 16 55 H 0.09 1.98 8.14 -2.39 -0.02 1.97 16 Total: -1.00 -69.96 425.46 2.51 -67.44 By element: Atomic # 1 Polarization: 51.42 SS G_CDS: -0.58 Total: 50.84 kcal Atomic # 6 Polarization: -9.74 SS G_CDS: 5.61 Total: -4.13 kcal Atomic # 7 Polarization: -120.27 SS G_CDS: -3.06 Total: -123.33 kcal Atomic # 8 Polarization: -38.00 SS G_CDS: -1.48 Total: -39.48 kcal Atomic # 14 Polarization: 46.64 SS G_CDS: 2.03 Total: 48.66 kcal Total: -69.96 2.51 -67.44 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001667134966.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.495 kcal (2) G-P(sol) polarization free energy of solvation -69.957 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.452 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.515 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.442 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.938 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds