Wall clock time and date at job start Tue Mar 31 2020 22:15:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.36934 * 120.00280 * 2 1 4 4 H 1.08001 * 120.00161 * 203.04383 * 3 2 1 5 5 C 1.38814 * 119.99909 * 23.04496 * 3 2 1 6 6 N 1.31621 * 119.99667 * 12.93255 * 5 3 2 7 7 Si 1.86799 * 120.00142 * 192.93822 * 5 3 2 8 8 H 1.48499 * 109.47060 * 359.97438 * 7 5 3 9 9 H 1.48502 * 109.46999 * 119.99686 * 7 5 3 10 10 H 1.48494 * 109.46993 * 239.99678 * 7 5 3 11 11 C 1.46508 * 119.99985 * 179.97438 * 2 1 3 12 12 C 1.53009 * 109.46422 * 90.00392 * 11 2 1 13 13 C 1.53006 * 109.46556 * 180.02562 * 12 11 2 14 14 C 1.53041 * 109.45535 * 185.00054 * 13 12 11 15 15 C 1.53202 * 109.30809 * 178.62713 * 14 13 12 16 16 N 1.46923 * 108.77330 * 54.63603 * 15 14 13 17 17 C 1.34774 * 120.62680 * 126.36937 * 16 15 14 18 18 O 1.21277 * 120.00462 * 359.97438 * 17 16 15 19 19 C 1.50708 * 119.99675 * 179.97438 * 17 16 15 20 20 C 1.52996 * 109.47013 * 179.97438 * 19 17 16 21 21 C 1.52996 * 109.47258 * 179.97438 * 20 19 17 22 22 H 1.09000 * 110.27527 * 304.36499 * 21 20 19 23 23 C 1.54946 * 110.31370 * 182.16670 * 21 20 19 24 24 C 1.55451 * 100.99009 * 204.69229 * 23 21 20 25 25 C 1.54376 * 102.18652 * 34.03802 * 24 23 21 26 26 O 1.43235 * 107.66861 * 338.74085 * 25 24 23 27 27 C 1.46929 * 118.74186 * 306.63771 * 16 15 14 28 28 C 1.52768 * 109.00188 * 53.31207 * 27 16 15 29 29 H 1.08995 * 109.47191 * 275.12192 * 1 2 3 30 30 H 1.09005 * 109.47139 * 35.12495 * 1 2 3 31 31 H 1.09003 * 109.47026 * 155.12303 * 1 2 3 32 32 H 0.97002 * 119.99674 * 180.02562 * 6 5 3 33 33 H 1.08997 * 109.47334 * 330.00875 * 11 2 1 34 34 H 1.09000 * 109.47116 * 210.00121 * 11 2 1 35 35 H 1.08997 * 109.46971 * 60.00261 * 12 11 2 36 36 H 1.09000 * 109.47253 * 299.99645 * 12 11 2 37 37 H 1.09005 * 109.45636 * 304.97233 * 13 12 11 38 38 H 1.09000 * 109.50004 * 58.67868 * 14 13 12 39 39 H 1.08997 * 109.52217 * 298.58982 * 14 13 12 40 40 H 1.09001 * 109.58632 * 294.84766 * 15 14 13 41 41 H 1.09003 * 109.58050 * 174.42177 * 15 14 13 42 42 H 1.09000 * 109.47390 * 59.99846 * 19 17 16 43 43 H 1.09004 * 109.46909 * 299.99827 * 19 17 16 44 44 H 1.09004 * 109.47422 * 60.00133 * 20 19 17 45 45 H 1.08996 * 109.47092 * 300.00025 * 20 19 17 46 46 H 1.09005 * 111.12431 * 322.55842 * 23 21 20 47 47 H 1.08998 * 111.12305 * 86.67809 * 23 21 20 48 48 H 1.08997 * 110.83570 * 275.88966 * 24 23 21 49 49 H 1.09004 * 110.92409 * 152.22776 * 24 23 21 50 50 H 1.09003 * 109.83273 * 219.17982 * 25 24 23 51 51 H 1.08997 * 109.83241 * 98.30036 * 25 24 23 52 52 H 1.08989 * 109.58745 * 173.14655 * 27 16 15 53 53 H 1.09005 * 109.58679 * 293.57534 * 27 16 15 54 54 H 1.09005 * 109.55888 * 185.55659 * 28 27 16 55 55 H 1.08994 * 109.36086 * 65.50458 * 28 27 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1651 1.2231 -0.3661 5 6 1.5387 2.3401 0.4706 6 7 0.4118 2.2596 1.1459 7 14 2.3158 4.0073 0.1454 8 1 3.5699 3.8263 -0.6291 9 1 1.3715 4.8506 -0.6308 10 1 2.6241 4.6703 1.4378 11 6 2.1975 -1.2688 0.0006 12 6 2.4525 -1.7109 -1.4419 13 6 3.2170 -3.0363 -1.4413 14 6 3.5809 -3.4155 -2.8787 15 6 4.3757 -4.7252 -2.8713 16 7 3.5980 -5.7463 -2.1563 17 6 3.3282 -6.9334 -2.7343 18 8 3.7278 -7.1670 -3.8553 19 6 2.5296 -7.9708 -1.9877 20 6 2.3666 -9.2156 -2.8622 21 6 1.5565 -10.2690 -2.1040 22 1 2.0269 -10.4898 -1.1459 23 6 1.4258 -11.5596 -2.9514 24 6 0.1248 -12.1717 -2.3604 25 6 -0.7015 -10.9131 -2.0189 26 8 0.2089 -9.8132 -1.9045 27 6 3.1151 -5.4463 -0.8015 28 6 2.3391 -4.1306 -0.8299 29 1 -0.3633 0.0917 1.0235 30 1 -0.3634 0.8406 -0.5913 31 1 -0.3633 -0.9323 -0.4323 32 1 -0.0153 3.0662 1.4744 33 1 1.6084 -2.0283 0.5146 34 1 3.1499 -1.1382 0.5144 35 1 3.0416 -0.9515 -1.9559 36 1 1.5001 -1.8415 -1.9557 37 1 4.1278 -2.9299 -0.8521 38 1 4.1866 -2.6248 -3.3213 39 1 2.6699 -3.5461 -3.4627 40 1 5.3290 -4.5712 -2.3656 41 1 4.5519 -5.0513 -3.8964 42 1 1.5469 -7.5670 -1.7442 43 1 3.0507 -8.2380 -1.0683 44 1 3.3491 -9.6196 -3.1061 45 1 1.8454 -8.9481 -3.7813 46 1 1.3030 -11.3246 -4.0087 47 1 2.2784 -12.2204 -2.7948 48 1 0.3414 -12.7492 -1.4618 49 1 -0.3891 -12.7837 -3.1017 50 1 -1.2250 -11.0596 -1.0741 51 1 -1.4211 -10.7163 -2.8135 52 1 2.4599 -6.2481 -0.4613 53 1 3.9635 -5.3524 -0.1235 54 1 2.0611 -3.8489 0.1857 55 1 1.4396 -4.2547 -1.4327 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001667405770.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:15:40 Heat of formation + Delta-G solvation = -102.337172 kcal Electronic energy + Delta-G solvation = -29774.321644 eV Core-core repulsion = 25810.066285 eV Total energy + Delta-G solvation = -3964.255358 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.31955 -40.30433 -39.03824 -37.46540 -35.17403 -34.63241 -33.16790 -32.96320 -32.13226 -30.33272 -29.42120 -27.90730 -26.66859 -25.27011 -24.20652 -23.72425 -22.53664 -22.13046 -21.67823 -21.09617 -19.80562 -18.67918 -18.17320 -17.87590 -17.00000 -16.83917 -16.63397 -16.51556 -15.80541 -15.68077 -15.52047 -15.21158 -15.06866 -14.78846 -14.71222 -14.47682 -14.17119 -14.09830 -13.94515 -13.75717 -13.49783 -13.12726 -12.92945 -12.80843 -12.78319 -12.64741 -12.57449 -12.43839 -12.33367 -12.18526 -12.11119 -12.00119 -11.86226 -11.77634 -11.67372 -11.65519 -11.55418 -11.34541 -11.08950 -10.73515 -10.61498 -10.41605 -9.63184 -8.72228 -7.80833 -5.29641 1.45292 1.46678 1.57055 1.63066 2.04857 2.51732 2.90809 3.31488 3.46004 3.65233 3.66508 3.78292 3.83026 3.96172 4.02741 4.04197 4.14962 4.15235 4.20894 4.35074 4.37758 4.41749 4.44623 4.51417 4.58824 4.63311 4.72883 4.76477 4.83503 4.84046 4.85032 4.86362 4.87464 4.94561 4.95377 5.00977 5.02813 5.09485 5.11033 5.14379 5.23119 5.24936 5.25749 5.32754 5.36559 5.52574 5.62316 5.63614 5.66410 5.71394 6.15066 6.35755 6.43921 7.17562 7.17590 7.91589 8.34970 9.22207 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.019767 B = 0.001865 C = 0.001739 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1416.181383 B =15012.657526 C =16093.570201 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.178 3.822 2 N -0.624 5.624 3 C -0.257 4.257 4 H 0.069 0.931 5 C -0.059 4.059 6 N -0.941 5.941 7 Si 0.967 3.033 8 H -0.266 1.266 9 H -0.293 1.293 10 H -0.291 1.291 11 C 0.150 3.850 12 C -0.116 4.116 13 C -0.075 4.075 14 C -0.121 4.121 15 C 0.113 3.887 16 N -0.611 5.611 17 C 0.509 3.491 18 O -0.590 6.590 19 C -0.130 4.130 20 C -0.097 4.097 21 C 0.078 3.922 22 H 0.087 0.913 23 C -0.153 4.153 24 C -0.150 4.150 25 C 0.041 3.959 26 O -0.405 6.405 27 C 0.108 3.892 28 C -0.129 4.129 29 H 0.005 0.995 30 H 0.010 0.990 31 H 0.029 0.971 32 H 0.247 0.753 33 H 0.053 0.947 34 H 0.041 0.959 35 H 0.041 0.959 36 H 0.041 0.959 37 H 0.079 0.921 38 H 0.076 0.924 39 H 0.050 0.950 40 H 0.081 0.919 41 H 0.074 0.926 42 H 0.102 0.898 43 H 0.119 0.881 44 H 0.082 0.918 45 H 0.053 0.947 46 H 0.072 0.928 47 H 0.099 0.901 48 H 0.088 0.912 49 H 0.092 0.908 50 H 0.075 0.925 51 H 0.066 0.934 52 H 0.106 0.894 53 H 0.088 0.912 54 H 0.087 0.913 55 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.105 -30.989 -4.860 31.635 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 N -0.348 5.348 3 C -0.387 4.387 4 H 0.087 0.913 5 C -0.253 4.253 6 N -0.589 5.589 7 Si 0.795 3.205 8 H -0.191 1.191 9 H -0.220 1.220 10 H -0.218 1.218 11 C 0.025 3.975 12 C -0.156 4.156 13 C -0.095 4.095 14 C -0.159 4.159 15 C -0.009 4.009 16 N -0.343 5.343 17 C 0.299 3.701 18 O -0.472 6.472 19 C -0.170 4.170 20 C -0.135 4.135 21 C 0.021 3.979 22 H 0.105 0.895 23 C -0.190 4.190 24 C -0.188 4.188 25 C -0.035 4.035 26 O -0.325 6.325 27 C -0.014 4.014 28 C -0.167 4.167 29 H 0.023 0.977 30 H 0.029 0.971 31 H 0.047 0.953 32 H 0.056 0.944 33 H 0.071 0.929 34 H 0.060 0.940 35 H 0.059 0.941 36 H 0.060 0.940 37 H 0.097 0.903 38 H 0.095 0.905 39 H 0.068 0.932 40 H 0.100 0.900 41 H 0.092 0.908 42 H 0.120 0.880 43 H 0.137 0.863 44 H 0.101 0.899 45 H 0.071 0.929 46 H 0.091 0.909 47 H 0.118 0.882 48 H 0.107 0.893 49 H 0.111 0.889 50 H 0.093 0.907 51 H 0.084 0.916 52 H 0.125 0.875 53 H 0.106 0.894 54 H 0.105 0.895 55 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 4.163 -30.781 -5.318 31.513 hybrid contribution -0.087 1.440 -0.305 1.475 sum 4.076 -29.341 -5.624 30.152 Atomic orbital electron populations 1.20495 0.83160 0.95598 0.97487 1.44214 1.02043 1.02108 1.86438 1.19541 0.98334 0.86948 1.33899 0.91301 1.25806 0.98765 1.01919 0.98818 1.70240 1.20940 1.27418 1.40283 0.85201 0.77989 0.80150 0.77130 1.19053 1.21996 1.21797 1.20985 0.95313 0.86367 0.94828 1.22014 0.98989 0.95963 0.98639 1.21039 0.98812 0.93692 0.95919 1.21887 1.00128 0.96810 0.97118 1.21566 0.94366 0.87052 0.97919 1.48302 1.53676 1.14703 1.17634 1.21306 0.79471 0.83198 0.86109 1.90649 1.55313 1.79890 1.21300 1.21676 1.01123 0.93941 1.00219 1.21434 1.00293 0.93950 0.97814 1.23127 0.83102 0.93180 0.98453 0.89531 1.23347 0.99222 0.96361 1.00105 1.23143 0.95639 0.97499 1.02511 1.23259 0.92689 0.85984 1.01603 1.88404 1.16781 1.34085 1.93227 1.21892 0.99615 0.97994 0.81894 1.21919 0.98251 0.94236 1.02286 0.97689 0.97146 0.95269 0.94379 0.92908 0.94034 0.94058 0.94026 0.90272 0.90501 0.93160 0.90038 0.90766 0.88010 0.86326 0.89917 0.92862 0.90932 0.88225 0.89348 0.88946 0.90726 0.91620 0.87547 0.89368 0.89507 0.92609 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 9.01 8.98 127.77 1.15 10.15 16 2 N -0.62 -31.69 2.92 -726.90 -2.12 -33.82 16 3 C -0.26 -14.30 9.65 84.03 0.81 -13.49 16 4 H 0.07 3.73 7.86 -2.91 -0.02 3.70 16 5 C -0.06 -3.35 5.10 84.86 0.43 -2.91 16 6 N -0.94 -56.86 10.71 21.65 0.23 -56.63 16 7 Si 0.97 45.79 29.57 68.60 2.03 47.82 16 8 H -0.27 -11.92 7.11 99.48 0.71 -11.22 16 9 H -0.29 -13.91 7.11 99.48 0.71 -13.20 16 10 H -0.29 -13.69 7.11 99.48 0.71 -12.99 16 11 C 0.15 5.85 5.40 86.38 0.47 6.32 16 12 C -0.12 -3.82 5.01 30.60 0.15 -3.66 16 13 C -0.08 -1.81 2.15 -10.77 -0.02 -1.83 16 14 C -0.12 -2.80 5.36 30.68 0.16 -2.64 16 15 C 0.11 2.45 6.43 86.37 0.56 3.00 16 16 N -0.61 -12.52 2.98 -819.70 -2.44 -14.96 16 17 C 0.51 11.65 7.70 87.66 0.67 12.33 16 18 O -0.59 -18.12 15.39 -3.02 -0.05 -18.17 16 19 C -0.13 -2.08 3.96 29.85 0.12 -1.96 16 20 C -0.10 -1.60 4.25 30.59 0.13 -1.47 16 21 C 0.08 1.03 3.43 31.26 0.11 1.14 16 22 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 23 C -0.15 -1.52 6.57 32.10 0.21 -1.31 16 24 C -0.15 -1.22 7.03 31.90 0.22 -1.00 16 25 C 0.04 0.51 7.79 72.45 0.56 1.07 16 26 O -0.40 -7.12 10.69 -148.98 -1.59 -8.71 16 27 C 0.11 1.69 6.31 86.22 0.54 2.23 16 28 C -0.13 -2.63 5.13 30.53 0.16 -2.47 16 29 H 0.00 0.27 7.34 -2.39 -0.02 0.25 16 30 H 0.01 0.55 7.34 -2.38 -0.02 0.53 16 31 H 0.03 1.25 8.03 -2.39 -0.02 1.23 16 32 H 0.25 14.44 8.31 -92.71 -0.77 13.67 16 33 H 0.05 1.87 6.46 -2.39 -0.02 1.85 16 34 H 0.04 1.62 8.04 -2.39 -0.02 1.61 16 35 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 36 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 37 H 0.08 1.80 8.14 -2.38 -0.02 1.78 16 38 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 39 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 40 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 41 H 0.07 1.84 7.01 -2.39 -0.02 1.83 16 42 H 0.10 1.66 7.44 -2.39 -0.02 1.64 16 43 H 0.12 1.24 7.95 -2.38 -0.02 1.23 16 44 H 0.08 1.33 8.10 -2.39 -0.02 1.31 16 45 H 0.05 1.13 8.10 -2.39 -0.02 1.11 16 46 H 0.07 0.84 8.06 -2.38 -0.02 0.82 16 47 H 0.10 0.66 8.14 -2.39 -0.02 0.64 16 48 H 0.09 0.52 8.14 -2.39 -0.02 0.50 16 49 H 0.09 0.55 8.14 -2.38 -0.02 0.53 16 50 H 0.07 0.78 8.14 -2.39 -0.02 0.77 16 51 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 52 H 0.11 1.24 5.93 -2.39 -0.01 1.23 16 53 H 0.09 1.14 8.14 -2.38 -0.02 1.12 16 54 H 0.09 1.74 6.50 -2.38 -0.02 1.73 16 55 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 Total: -1.00 -72.31 420.32 3.32 -68.99 By element: Atomic # 1 Polarization: 11.14 SS G_CDS: 0.83 Total: 11.96 kcal Atomic # 6 Polarization: -2.93 SS G_CDS: 6.44 Total: 3.51 kcal Atomic # 7 Polarization: -101.07 SS G_CDS: -4.33 Total: -105.40 kcal Atomic # 8 Polarization: -25.24 SS G_CDS: -1.64 Total: -26.88 kcal Atomic # 14 Polarization: 45.79 SS G_CDS: 2.03 Total: 47.82 kcal Total: -72.31 3.32 -68.99 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001667405770.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.344 kcal (2) G-P(sol) polarization free energy of solvation -72.314 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.658 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.321 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.993 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.337 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds