Wall clock time and date at job start Tue Mar 31 2020 22:15:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.36934 * 120.00191 * 2 1 4 4 H 1.07998 * 120.00001 * 203.04902 * 3 2 1 5 5 C 1.38816 * 119.99711 * 23.04629 * 3 2 1 6 6 N 1.31619 * 120.00264 * 12.92681 * 5 3 2 7 7 Si 1.86801 * 119.99428 * 192.92978 * 5 3 2 8 8 H 1.48498 * 109.47196 * 90.00218 * 7 5 3 9 9 H 1.48505 * 109.46949 * 209.99665 * 7 5 3 10 10 H 1.48496 * 109.47454 * 329.99722 * 7 5 3 11 11 C 1.46502 * 119.99575 * 179.97438 * 2 1 3 12 12 C 1.52994 * 109.47019 * 90.00124 * 11 2 1 13 13 C 1.53002 * 109.47155 * 179.97438 * 12 11 2 14 14 C 1.53042 * 109.45990 * 174.99752 * 13 12 11 15 15 C 1.53194 * 109.31004 * 181.38990 * 14 13 12 16 16 N 1.46929 * 108.77592 * 305.36535 * 15 14 13 17 17 C 1.34779 * 120.63052 * 233.58547 * 16 15 14 18 18 O 1.21284 * 120.00116 * 0.02562 * 17 16 15 19 19 C 1.50702 * 119.99749 * 179.97438 * 17 16 15 20 20 C 1.53002 * 109.47069 * 180.02562 * 19 17 16 21 21 C 1.53001 * 109.47016 * 180.02562 * 20 19 17 22 22 H 1.08991 * 110.55296 * 56.42053 * 21 20 19 23 23 C 1.55224 * 110.77573 * 179.29115 * 21 20 19 24 24 C 1.54808 * 101.98730 * 155.49830 * 23 21 20 25 25 C 1.54105 * 104.30530 * 339.25753 * 24 23 21 26 26 O 1.43741 * 107.29062 * 357.90475 * 25 24 23 27 27 C 1.46929 * 118.73577 * 53.86371 * 16 15 14 28 28 C 1.53035 * 109.46416 * 295.07098 * 13 12 11 29 29 H 1.09003 * 109.47216 * 275.12565 * 1 2 3 30 30 H 1.08997 * 109.46618 * 35.12367 * 1 2 3 31 31 H 1.08998 * 109.46926 * 155.12320 * 1 2 3 32 32 H 0.97004 * 119.99804 * 180.02562 * 6 5 3 33 33 H 1.09004 * 109.47214 * 330.00088 * 11 2 1 34 34 H 1.09005 * 109.46663 * 209.99839 * 11 2 1 35 35 H 1.09004 * 109.47157 * 59.99929 * 12 11 2 36 36 H 1.09003 * 109.47645 * 299.99611 * 12 11 2 37 37 H 1.09004 * 109.44276 * 55.03730 * 13 12 11 38 38 H 1.08998 * 109.49600 * 61.44166 * 14 13 12 39 39 H 1.08992 * 109.52894 * 301.35603 * 14 13 12 40 40 H 1.09003 * 109.58645 * 185.58275 * 15 14 13 41 41 H 1.09000 * 109.58817 * 65.15577 * 15 14 13 42 42 H 1.09006 * 109.47013 * 60.00358 * 19 17 16 43 43 H 1.09006 * 109.47200 * 300.00005 * 19 17 16 44 44 H 1.08996 * 109.47179 * 59.99558 * 20 19 17 45 45 H 1.09006 * 109.46770 * 299.99847 * 20 19 17 46 46 H 1.08999 * 110.89472 * 37.36092 * 23 21 20 47 47 H 1.09003 * 111.01999 * 273.68860 * 23 21 20 48 48 H 1.09000 * 110.48804 * 220.51787 * 24 23 21 49 49 H 1.09003 * 110.48902 * 98.00089 * 24 23 21 50 50 H 1.08994 * 109.87899 * 117.33117 * 25 24 23 51 51 H 1.09004 * 109.87615 * 238.47892 * 25 24 23 52 52 H 1.08999 * 109.58694 * 65.92836 * 27 16 15 53 53 H 1.09002 * 109.57944 * 186.35093 * 27 16 15 54 54 H 1.09003 * 109.49903 * 298.56607 * 28 13 12 55 55 H 1.09003 * 109.49840 * 58.65948 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1498 1.1859 0.0000 4 1 3.1651 1.2232 -0.3662 5 6 1.5388 2.3401 0.4706 6 7 0.4118 2.2597 1.1458 7 14 2.3161 4.0073 0.1455 8 1 1.7989 4.5533 -1.1349 9 1 1.9760 4.9363 1.2530 10 1 3.7910 3.8576 0.0601 11 6 2.1975 -1.2688 0.0006 12 6 2.4524 -1.7111 -1.4417 13 6 3.2179 -3.0358 -1.4411 14 6 3.3639 -3.5410 -2.8784 15 6 4.1001 -4.8843 -2.8709 16 7 5.3735 -4.7218 -2.1562 17 6 6.5363 -5.0830 -2.7340 18 8 6.5383 -5.5469 -3.8546 19 6 7.8342 -4.9094 -1.9881 20 6 8.9934 -5.3925 -2.8622 21 6 10.3110 -5.2168 -2.1046 22 1 10.2770 -5.7430 -1.1507 23 6 11.5077 -5.7150 -2.9585 24 6 12.6861 -4.9066 -2.3632 25 6 12.0124 -3.7081 -1.6670 26 8 10.5986 -3.8164 -1.9029 27 6 5.3545 -4.1636 -0.7971 28 6 4.6047 -2.8232 -0.8300 29 1 -0.3634 0.0918 1.0236 30 1 -0.3632 0.8405 -0.5913 31 1 -0.3633 -0.9323 -0.4323 32 1 -0.0153 3.0663 1.4744 33 1 1.6083 -2.0282 0.5147 34 1 3.1499 -1.1382 0.5144 35 1 3.0416 -0.9517 -1.9559 36 1 1.5000 -1.8417 -1.9556 37 1 2.6701 -3.7712 -0.8517 38 1 3.9329 -2.8175 -3.4622 39 1 2.3764 -3.6698 -3.3213 40 1 4.2943 -5.2003 -3.8959 41 1 3.4900 -5.6326 -2.3650 42 1 7.8052 -5.4928 -1.0677 43 1 7.9764 -3.8561 -1.7463 44 1 9.0222 -4.8089 -3.7823 45 1 8.8514 -6.4458 -3.1042 46 1 11.3619 -5.4722 -4.0111 47 1 11.6640 -6.7855 -2.8257 48 1 13.3517 -4.5630 -3.1550 49 1 13.2349 -5.5091 -1.6393 50 1 12.2132 -3.7406 -0.5962 51 1 12.3882 -2.7756 -2.0884 52 1 4.8446 -4.8543 -0.1255 53 1 6.3765 -4.0040 -0.4535 54 1 5.1621 -2.1064 -1.4331 55 1 4.5001 -2.4413 0.1856 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001667405771.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:15:44 Heat of formation + Delta-G solvation = -102.140907 kcal Electronic energy + Delta-G solvation = -29849.243943 eV Core-core repulsion = 25884.997095 eV Total energy + Delta-G solvation = -3964.246848 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.30703 -40.28084 -39.02357 -37.45965 -35.17290 -34.63512 -33.16489 -32.95175 -32.09820 -30.29276 -29.39982 -27.91207 -26.66624 -25.30849 -24.23396 -23.74165 -22.45390 -22.07163 -21.77312 -21.12340 -19.80043 -18.67594 -18.18482 -17.66811 -16.98603 -16.83390 -16.63102 -16.46790 -16.03090 -15.76925 -15.48529 -15.18879 -15.07436 -14.83977 -14.65002 -14.56984 -14.13657 -14.05354 -13.91386 -13.75314 -13.50001 -13.16825 -12.85949 -12.77860 -12.72643 -12.64344 -12.57980 -12.43869 -12.38505 -12.19729 -12.09285 -11.98517 -11.87235 -11.80807 -11.71254 -11.56275 -11.51226 -11.33201 -11.11368 -10.73737 -10.59761 -10.57110 -9.62554 -8.72186 -7.80576 -5.29446 1.45352 1.46922 1.55406 1.62561 2.05009 2.51582 2.94934 3.31359 3.45226 3.66848 3.72366 3.75395 3.83535 3.95381 4.03744 4.05590 4.10875 4.14637 4.18947 4.35153 4.38065 4.41410 4.45967 4.50835 4.58081 4.62880 4.72535 4.76136 4.79084 4.83861 4.85318 4.87044 4.87786 4.92428 4.96996 5.01357 5.06578 5.09737 5.11639 5.14626 5.21536 5.23861 5.26482 5.27962 5.36820 5.53012 5.62716 5.63290 5.67176 5.71846 6.02969 6.35867 6.43326 7.17178 7.17748 7.91846 8.35116 9.22120 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.012174 B = 0.002160 C = 0.001897 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2299.403540 B =12959.887123 C =14757.007452 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.177 3.823 2 N -0.624 5.624 3 C -0.255 4.255 4 H 0.068 0.932 5 C -0.058 4.058 6 N -0.941 5.941 7 Si 0.966 3.034 8 H -0.289 1.289 9 H -0.294 1.294 10 H -0.268 1.268 11 C 0.150 3.850 12 C -0.117 4.117 13 C -0.074 4.074 14 C -0.121 4.121 15 C 0.114 3.886 16 N -0.611 5.611 17 C 0.509 3.491 18 O -0.590 6.590 19 C -0.131 4.131 20 C -0.092 4.092 21 C 0.074 3.926 22 H 0.087 0.913 23 C -0.151 4.151 24 C -0.153 4.153 25 C 0.038 3.962 26 O -0.401 6.401 27 C 0.109 3.891 28 C -0.130 4.130 29 H 0.004 0.996 30 H 0.010 0.990 31 H 0.030 0.970 32 H 0.247 0.753 33 H 0.047 0.953 34 H 0.048 0.952 35 H 0.035 0.965 36 H 0.047 0.953 37 H 0.085 0.915 38 H 0.046 0.954 39 H 0.081 0.919 40 H 0.074 0.926 41 H 0.085 0.915 42 H 0.120 0.880 43 H 0.100 0.900 44 H 0.053 0.947 45 H 0.085 0.915 46 H 0.069 0.931 47 H 0.097 0.903 48 H 0.081 0.919 49 H 0.090 0.910 50 H 0.067 0.933 51 H 0.082 0.918 52 H 0.092 0.908 53 H 0.104 0.896 54 H 0.050 0.950 55 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.185 -21.201 -4.371 30.288 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 N -0.348 5.348 3 C -0.385 4.385 4 H 0.085 0.915 5 C -0.253 4.253 6 N -0.588 5.588 7 Si 0.794 3.206 8 H -0.216 1.216 9 H -0.220 1.220 10 H -0.192 1.192 11 C 0.024 3.976 12 C -0.157 4.157 13 C -0.093 4.093 14 C -0.159 4.159 15 C -0.009 4.009 16 N -0.344 5.344 17 C 0.299 3.701 18 O -0.471 6.471 19 C -0.171 4.171 20 C -0.130 4.130 21 C 0.017 3.983 22 H 0.105 0.895 23 C -0.189 4.189 24 C -0.191 4.191 25 C -0.039 4.039 26 O -0.321 6.321 27 C -0.013 4.013 28 C -0.168 4.168 29 H 0.023 0.977 30 H 0.029 0.971 31 H 0.048 0.952 32 H 0.056 0.944 33 H 0.065 0.935 34 H 0.066 0.934 35 H 0.054 0.946 36 H 0.065 0.935 37 H 0.103 0.897 38 H 0.064 0.936 39 H 0.099 0.901 40 H 0.092 0.908 41 H 0.103 0.897 42 H 0.138 0.862 43 H 0.118 0.882 44 H 0.072 0.928 45 H 0.104 0.896 46 H 0.087 0.913 47 H 0.116 0.884 48 H 0.100 0.900 49 H 0.109 0.891 50 H 0.085 0.915 51 H 0.101 0.899 52 H 0.110 0.890 53 H 0.122 0.878 54 H 0.068 0.932 55 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 20.938 -21.147 -4.866 30.154 hybrid contribution -0.064 1.458 -0.274 1.484 sum 20.875 -19.689 -5.140 29.152 Atomic orbital electron populations 1.20506 0.83158 0.95654 0.97486 1.44212 1.02058 1.02102 1.86433 1.19472 0.98287 0.86932 1.33856 0.91452 1.25793 0.98803 1.01860 0.98833 1.70230 1.20914 1.27449 1.40208 0.85281 0.78495 0.80065 0.76736 1.21630 1.22045 1.19229 1.20990 0.95438 0.86283 0.94844 1.22021 0.98923 0.96083 0.98640 1.21039 0.95863 0.96476 0.95970 1.21890 1.00714 0.96280 0.97058 1.21584 0.84045 0.97319 0.97940 1.48308 1.06387 1.62231 1.17430 1.21271 0.86364 0.76329 0.86122 1.90650 1.87691 1.47471 1.21273 1.21678 0.90202 1.04883 1.00294 1.21316 0.91585 1.02327 0.97763 1.23334 0.94430 0.82116 0.98404 0.89471 1.23216 0.93983 1.01639 1.00065 1.22942 0.98328 0.96656 1.01131 1.23301 0.80603 0.99656 1.00309 1.88882 1.24497 1.25883 1.92852 1.22065 1.02987 0.94443 0.81805 1.22061 0.95551 0.97067 1.02097 0.97731 0.97135 0.95153 0.94378 0.93472 0.93383 0.94636 0.93458 0.89708 0.93562 0.90086 0.90781 0.89722 0.86218 0.88212 0.92814 0.89619 0.91266 0.88447 0.90013 0.89126 0.91455 0.89942 0.89002 0.87766 0.93150 0.89840 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 8.94 8.98 127.77 1.15 10.09 16 2 N -0.62 -31.64 2.92 -726.92 -2.12 -33.77 16 3 C -0.26 -14.19 9.65 84.03 0.81 -13.38 16 4 H 0.07 3.66 7.86 -2.91 -0.02 3.63 16 5 C -0.06 -3.33 5.10 84.86 0.43 -2.90 16 6 N -0.94 -56.77 10.71 21.65 0.23 -56.54 16 7 Si 0.97 45.94 29.57 68.60 2.03 47.97 16 8 H -0.29 -13.67 7.11 99.48 0.71 -12.96 16 9 H -0.29 -13.99 7.11 99.48 0.71 -13.28 16 10 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 11 C 0.15 5.81 5.40 86.38 0.47 6.28 16 12 C -0.12 -3.82 5.01 30.59 0.15 -3.67 16 13 C -0.07 -1.77 2.15 -10.77 -0.02 -1.79 16 14 C -0.12 -2.76 5.36 30.67 0.16 -2.60 16 15 C 0.11 2.40 6.43 86.36 0.56 2.96 16 16 N -0.61 -12.67 2.97 -818.04 -2.43 -15.09 16 17 C 0.51 11.86 7.70 87.66 0.67 12.53 16 18 O -0.59 -18.24 15.40 -3.04 -0.05 -18.28 16 19 C -0.13 -2.18 3.96 29.85 0.12 -2.06 16 20 C -0.09 -1.57 4.29 30.60 0.13 -1.44 16 21 C 0.07 1.03 3.32 31.36 0.10 1.14 16 22 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 23 C -0.15 -1.67 6.61 31.97 0.21 -1.46 16 24 C -0.15 -1.41 7.00 31.59 0.22 -1.19 16 25 C 0.04 0.49 7.70 72.36 0.56 1.04 16 26 O -0.40 -7.47 10.89 -148.98 -1.62 -9.10 16 27 C 0.11 1.76 6.37 86.51 0.55 2.32 16 28 C -0.13 -2.83 5.16 30.81 0.16 -2.67 16 29 H 0.00 0.24 7.34 -2.39 -0.02 0.23 16 30 H 0.01 0.55 7.34 -2.39 -0.02 0.53 16 31 H 0.03 1.29 8.03 -2.39 -0.02 1.27 16 32 H 0.25 14.48 8.31 -92.71 -0.77 13.71 16 33 H 0.05 1.69 8.07 -2.38 -0.02 1.67 16 34 H 0.05 1.84 6.43 -2.38 -0.02 1.83 16 35 H 0.03 1.32 8.14 -2.38 -0.02 1.30 16 36 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 37 H 0.08 1.79 8.14 -2.38 -0.02 1.77 16 38 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 39 H 0.08 1.72 8.14 -2.39 -0.02 1.71 16 40 H 0.07 1.81 7.01 -2.39 -0.02 1.80 16 41 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 42 H 0.12 1.30 7.93 -2.38 -0.02 1.28 16 43 H 0.10 1.74 7.48 -2.38 -0.02 1.72 16 44 H 0.05 1.18 8.10 -2.39 -0.02 1.16 16 45 H 0.09 1.40 8.10 -2.38 -0.02 1.38 16 46 H 0.07 0.90 8.06 -2.39 -0.02 0.88 16 47 H 0.10 0.73 8.14 -2.39 -0.02 0.71 16 48 H 0.08 0.67 8.14 -2.39 -0.02 0.65 16 49 H 0.09 0.55 8.14 -2.39 -0.02 0.53 16 50 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 51 H 0.08 1.01 8.14 -2.38 -0.02 1.00 16 52 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 53 H 0.10 1.31 5.93 -2.39 -0.01 1.30 16 54 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 55 H 0.08 1.85 6.50 -2.39 -0.02 1.83 16 Total: -1.00 -72.39 420.47 3.30 -69.09 By element: Atomic # 1 Polarization: 11.70 SS G_CDS: 0.83 Total: 12.53 kcal Atomic # 6 Polarization: -3.24 SS G_CDS: 6.44 Total: 3.20 kcal Atomic # 7 Polarization: -101.08 SS G_CDS: -4.32 Total: -105.40 kcal Atomic # 8 Polarization: -25.71 SS G_CDS: -1.67 Total: -27.38 kcal Atomic # 14 Polarization: 45.94 SS G_CDS: 2.03 Total: 47.97 kcal Total: -72.39 3.30 -69.09 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001667405771.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.054 kcal (2) G-P(sol) polarization free energy of solvation -72.388 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.442 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.301 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.087 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.141 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds