Wall clock time and date at job start Tue Mar 31 2020 22:15:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42910 * 1 3 3 C 1.42898 * 113.99546 * 2 1 4 4 C 1.53002 * 109.46747 * 180.02562 * 3 2 1 5 5 C 1.50694 * 112.85212 * 294.63114 * 4 3 2 6 6 O 1.21279 * 120.00431 * 103.69244 * 5 4 3 7 7 N 1.34784 * 119.99938 * 283.69460 * 5 4 3 8 8 C 1.46930 * 120.62769 * 4.90245 * 7 5 4 9 9 C 1.53621 * 108.54430 * 126.36708 * 8 7 5 10 10 C 1.53040 * 109.24263 * 54.85547 * 9 8 7 11 11 C 1.53001 * 109.46259 * 178.49490 * 10 9 8 12 12 C 1.53001 * 109.46717 * 295.06594 * 11 10 9 13 13 N 1.46493 * 109.47148 * 180.02562 * 12 11 10 14 14 C 1.46507 * 119.99770 * 269.99554 * 13 12 11 15 15 C 1.36934 * 120.00202 * 90.00099 * 13 12 11 16 16 H 1.07994 * 120.00377 * 24.70310 * 15 13 12 17 17 C 1.38821 * 119.99851 * 204.70707 * 15 13 12 18 18 N 1.31619 * 120.00109 * 6.58606 * 17 15 13 19 19 Si 1.86803 * 119.99790 * 186.58622 * 17 15 13 20 20 H 1.48497 * 109.47291 * 359.97438 * 19 17 15 21 21 H 1.48496 * 109.46724 * 120.00133 * 19 17 15 22 22 H 1.48504 * 109.46696 * 239.99903 * 19 17 15 23 23 C 1.53049 * 109.53750 * 298.51113 * 10 9 8 24 24 C 1.46926 * 120.63322 * 185.17524 * 7 5 4 25 25 C 1.53789 * 113.69233 * 65.89924 * 4 3 2 26 26 C 1.53781 * 87.07932 * 89.12426 * 25 4 3 27 27 C 1.53779 * 87.08115 * 25.43714 * 26 25 4 28 28 H 1.08997 * 109.46978 * 299.99720 * 1 2 3 29 29 H 1.08994 * 109.46836 * 59.99945 * 1 2 3 30 30 H 1.08998 * 109.46652 * 179.97438 * 1 2 3 31 31 H 1.08993 * 109.47346 * 60.00517 * 3 2 1 32 32 H 1.08996 * 109.47146 * 299.99647 * 3 2 1 33 33 H 1.09003 * 109.58116 * 246.20194 * 8 7 5 34 34 H 1.08995 * 109.58703 * 6.62181 * 8 7 5 35 35 H 1.09005 * 109.63221 * 294.86412 * 9 8 7 36 36 H 1.08999 * 109.43173 * 174.72053 * 9 8 7 37 37 H 1.08997 * 109.46316 * 58.52943 * 10 9 8 38 38 H 1.08997 * 109.47549 * 55.06251 * 11 10 9 39 39 H 1.09002 * 109.47259 * 175.06873 * 11 10 9 40 40 H 1.09008 * 109.47183 * 299.99848 * 12 11 10 41 41 H 1.09000 * 109.47208 * 59.99626 * 12 11 10 42 42 H 1.09005 * 109.46710 * 95.04121 * 14 13 12 43 43 H 1.08996 * 109.46899 * 215.03562 * 14 13 12 44 44 H 1.08991 * 109.47275 * 335.04027 * 14 13 12 45 45 H 0.96998 * 120.00047 * 179.97438 * 18 17 15 46 46 H 1.09004 * 109.49514 * 301.41733 * 23 10 9 47 47 H 1.09001 * 109.49845 * 181.32167 * 23 10 9 48 48 H 1.09001 * 109.58508 * 353.37905 * 24 7 5 49 49 H 1.09005 * 109.58574 * 113.79709 * 24 7 5 50 50 H 1.08997 * 113.61230 * 203.67711 * 25 4 3 51 51 H 1.09000 * 113.60815 * 334.57833 * 25 4 3 52 52 H 1.08997 * 113.61756 * 270.88074 * 26 25 4 53 53 H 1.09005 * 113.61011 * 139.98201 * 26 25 4 54 54 H 1.09006 * 113.61218 * 220.01963 * 27 26 25 55 55 H 1.08996 * 113.69295 * 89.12798 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1847 -0.0006 5 6 4.0737 0.5613 1.2613 6 8 4.4484 -0.5921 1.2559 7 7 4.1386 1.2856 2.3961 8 6 3.5906 2.6479 2.4470 9 6 2.6088 2.7359 3.6253 10 6 3.3191 2.2963 4.9076 11 6 2.3567 2.4177 6.0908 12 6 1.9993 3.8894 6.3084 13 7 1.0782 4.0058 7.4416 14 6 -0.3684 3.9412 7.2194 15 6 1.5694 4.1751 8.7086 16 1 2.5460 4.6123 8.8552 17 6 0.8121 3.7846 9.8045 18 7 -0.3185 3.1350 9.6254 19 14 1.3978 4.1811 11.5335 20 1 2.6886 4.9119 11.4635 21 1 0.3861 5.0264 12.2170 22 1 1.5843 2.9194 12.2943 23 6 3.7741 0.8417 4.7677 24 6 4.7640 0.7302 3.6041 25 6 4.1056 0.5629 -1.2865 26 6 4.1652 1.9899 -1.8564 27 6 4.2561 2.4824 -0.4025 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3632 -1.0277 -0.0005 31 1 1.6887 1.8463 0.8900 32 1 1.6886 1.8463 -0.8900 33 1 4.4012 3.3627 2.5890 34 1 3.0671 2.8662 1.5163 35 1 1.7552 2.0837 3.4403 36 1 2.2645 3.7643 3.7345 37 1 4.1869 2.9333 5.0787 38 1 1.4497 1.8507 5.8811 39 1 2.8327 2.0229 6.9884 40 1 2.9063 4.4564 6.5181 41 1 1.5233 4.2842 5.4108 42 1 -0.7152 2.9201 7.3784 43 1 -0.8733 4.6091 7.9172 44 1 -0.5930 4.2462 6.1974 45 1 -0.8475 2.8618 10.3912 46 1 2.9095 0.2074 4.5719 47 1 4.2591 0.5219 5.6900 48 1 5.0150 -0.3173 3.4369 49 1 5.6684 1.2918 3.8385 50 1 5.0855 0.1048 -1.1527 51 1 3.4013 -0.0861 -1.8070 52 1 3.2508 2.2957 -2.3648 53 1 5.0629 2.1891 -2.4418 54 1 3.6733 3.3832 -0.2094 55 1 5.2767 2.5498 -0.0259 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001667417204.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:15:19 Heat of formation + Delta-G solvation = -63.642089 kcal Electronic energy + Delta-G solvation = -31342.131278 eV Core-core repulsion = 27379.553865 eV Total energy + Delta-G solvation = -3962.577414 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.05779 -39.81000 -38.71298 -37.95320 -37.43824 -35.14976 -33.16983 -32.24484 -30.33974 -29.82546 -27.92238 -27.44014 -26.73855 -26.41164 -25.17949 -24.20680 -23.79879 -22.23992 -21.34579 -20.47969 -19.52496 -18.72208 -18.27772 -17.43782 -17.15617 -16.86289 -16.81057 -16.38382 -15.99287 -15.59896 -15.57273 -15.39726 -15.15342 -15.07622 -14.92058 -14.39316 -14.24697 -14.01333 -13.70653 -13.43988 -13.31804 -13.27672 -13.15123 -12.92065 -12.82429 -12.74109 -12.56628 -12.43127 -12.34255 -12.22336 -12.11177 -12.06407 -12.00949 -11.68589 -11.59371 -11.41806 -11.36578 -11.19116 -11.05989 -10.78678 -10.63772 -10.37962 -9.63081 -8.71917 -7.80982 -5.30549 1.45262 1.46226 1.56455 1.60879 2.02043 2.51454 2.64609 3.31119 3.32945 3.64182 3.66486 3.68889 3.77381 3.84599 3.89084 3.97999 4.03488 4.14504 4.28356 4.33807 4.36996 4.41540 4.45466 4.51395 4.55106 4.57309 4.61914 4.73524 4.79330 4.80255 4.80588 4.82776 4.84605 4.89958 4.92849 4.97844 5.05325 5.07226 5.10580 5.14468 5.19115 5.23475 5.32052 5.35838 5.45216 5.50341 5.60236 5.62514 5.67837 5.77615 6.17016 6.37298 6.44767 7.18648 7.18834 7.92009 8.35209 9.22533 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.018853 B = 0.002440 C = 0.002342 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1484.820758 B =11474.535506 C =11950.623294 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.415 6.415 3 C 0.083 3.917 4 C -0.111 4.111 5 C 0.527 3.473 6 O -0.589 6.589 7 N -0.607 5.607 8 C 0.103 3.897 9 C -0.127 4.127 10 C -0.073 4.073 11 C -0.116 4.116 12 C 0.152 3.848 13 N -0.625 5.625 14 C 0.179 3.821 15 C -0.255 4.255 16 H 0.071 0.929 17 C -0.058 4.058 18 N -0.943 5.943 19 Si 0.967 3.033 20 H -0.264 1.264 21 H -0.291 1.291 22 H -0.295 1.295 23 C -0.122 4.122 24 C 0.115 3.885 25 C -0.115 4.115 26 C -0.127 4.127 27 C -0.113 4.113 28 H 0.042 0.958 29 H 0.063 0.937 30 H 0.087 0.913 31 H 0.062 0.938 32 H 0.091 0.909 33 H 0.095 0.905 34 H 0.107 0.893 35 H 0.049 0.951 36 H 0.095 0.905 37 H 0.085 0.915 38 H 0.028 0.972 39 H 0.030 0.970 40 H 0.048 0.952 41 H 0.063 0.937 42 H -0.002 1.002 43 H 0.015 0.985 44 H 0.030 0.970 45 H 0.245 0.755 46 H 0.041 0.959 47 H 0.072 0.928 48 H 0.068 0.932 49 H 0.087 0.913 50 H 0.069 0.931 51 H 0.067 0.933 52 H 0.101 0.899 53 H 0.085 0.915 54 H 0.106 0.894 55 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.886 1.818 -25.912 27.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.334 6.334 3 C 0.006 3.994 4 C -0.114 4.114 5 C 0.317 3.683 6 O -0.469 6.469 7 N -0.339 5.339 8 C -0.018 4.018 9 C -0.165 4.165 10 C -0.092 4.092 11 C -0.156 4.156 12 C 0.026 3.974 13 N -0.348 5.348 14 C 0.034 3.966 15 C -0.386 4.386 16 H 0.089 0.911 17 C -0.253 4.253 18 N -0.590 5.590 19 Si 0.795 3.205 20 H -0.188 1.188 21 H -0.218 1.218 22 H -0.222 1.222 23 C -0.160 4.160 24 C -0.007 4.007 25 C -0.153 4.153 26 C -0.164 4.164 27 C -0.150 4.150 28 H 0.061 0.939 29 H 0.082 0.918 30 H 0.105 0.895 31 H 0.081 0.919 32 H 0.109 0.891 33 H 0.113 0.887 34 H 0.125 0.875 35 H 0.067 0.933 36 H 0.113 0.887 37 H 0.103 0.897 38 H 0.047 0.953 39 H 0.049 0.951 40 H 0.066 0.934 41 H 0.081 0.919 42 H 0.016 0.984 43 H 0.033 0.967 44 H 0.049 0.951 45 H 0.055 0.945 46 H 0.060 0.940 47 H 0.091 0.909 48 H 0.086 0.914 49 H 0.105 0.895 50 H 0.088 0.912 51 H 0.085 0.915 52 H 0.119 0.881 53 H 0.104 0.896 54 H 0.125 0.875 55 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 8.080 1.034 -25.794 27.050 hybrid contribution -0.451 -0.605 1.832 1.982 sum 7.629 0.430 -23.962 25.151 Atomic orbital electron populations 1.22893 0.79441 1.03513 1.01061 1.87938 1.21330 1.28553 1.95609 1.22453 0.89317 0.85076 1.02530 1.22254 0.95725 1.00979 0.92485 1.20913 0.76969 0.85218 0.85205 1.90632 1.51323 1.19114 1.85807 1.48227 1.58381 1.16818 1.10503 1.22288 0.97749 0.81828 0.99982 1.22076 0.97786 1.02823 0.93768 1.21042 0.98287 0.95655 0.94231 1.22021 0.97603 0.99369 0.96624 1.21068 0.93038 0.93951 0.89295 1.44263 1.01970 1.84916 1.03650 1.20515 0.83658 0.97627 0.94765 1.19588 1.02396 1.32679 0.83920 0.91078 1.25878 0.98241 0.99261 1.01871 1.70239 1.15972 1.43501 1.29301 0.85195 0.77988 0.76940 0.80333 1.18795 1.21843 1.22242 1.21883 0.98708 0.97366 0.98088 1.21548 0.95700 0.99763 0.83728 1.22747 1.00588 0.98239 0.93770 1.22870 1.04010 0.93581 0.95935 1.23097 1.00938 0.94554 0.96439 0.93884 0.91798 0.89475 0.91949 0.89122 0.88687 0.87542 0.93258 0.88698 0.89685 0.95271 0.95072 0.93374 0.91855 0.98404 0.96665 0.95129 0.94523 0.94015 0.90931 0.91386 0.89479 0.91214 0.91450 0.88075 0.89594 0.87518 0.89024 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.44 11.01 113.37 1.25 1.69 16 2 O -0.41 -9.57 10.39 -148.98 -1.55 -11.12 16 3 C 0.08 1.36 4.78 71.98 0.34 1.70 16 4 C -0.11 -2.00 0.41 -52.40 -0.02 -2.02 16 5 C 0.53 13.79 6.48 87.65 0.57 14.36 16 6 O -0.59 -21.08 15.86 -3.03 -0.05 -21.12 16 7 N -0.61 -13.50 2.97 -818.07 -2.43 -15.93 16 8 C 0.10 1.60 5.20 86.51 0.45 2.05 16 9 C -0.13 -2.57 5.16 30.82 0.16 -2.41 16 10 C -0.07 -1.84 2.15 -10.76 -0.02 -1.87 16 11 C -0.12 -4.13 5.01 30.60 0.15 -3.97 16 12 C 0.15 5.73 5.46 86.38 0.47 6.20 16 13 N -0.62 -31.15 2.92 -726.93 -2.13 -33.27 16 14 C 0.18 8.96 9.00 127.77 1.15 10.11 16 15 C -0.26 -14.02 9.66 84.04 0.81 -13.20 16 16 H 0.07 3.77 7.83 -2.91 -0.02 3.74 16 17 C -0.06 -3.30 5.22 84.86 0.44 -2.86 16 18 N -0.94 -56.74 10.48 21.65 0.23 -56.52 16 19 Si 0.97 45.48 29.56 68.60 2.03 47.50 16 20 H -0.26 -11.63 7.11 99.48 0.71 -10.92 16 21 H -0.29 -13.67 7.11 99.48 0.71 -12.96 16 22 H -0.30 -14.01 7.11 99.48 0.71 -13.30 16 23 C -0.12 -3.21 5.36 30.67 0.16 -3.04 16 24 C 0.12 2.75 6.44 86.36 0.56 3.31 16 25 C -0.12 -2.06 6.82 31.12 0.21 -1.84 16 26 C -0.13 -1.20 7.73 31.12 0.24 -0.96 16 27 C -0.11 -1.14 5.52 31.12 0.17 -0.97 16 28 H 0.04 0.69 8.14 -2.39 -0.02 0.68 16 29 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 30 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 31 H 0.06 0.97 6.37 -2.39 -0.02 0.95 16 32 H 0.09 0.94 7.31 -2.39 -0.02 0.93 16 33 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 34 H 0.11 1.22 3.24 -2.39 -0.01 1.21 16 35 H 0.05 1.17 8.14 -2.38 -0.02 1.15 16 36 H 0.09 1.69 6.50 -2.39 -0.02 1.68 16 37 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 38 H 0.03 1.15 8.14 -2.39 -0.02 1.13 16 39 H 0.03 1.28 8.14 -2.39 -0.02 1.26 16 40 H 0.05 1.74 8.04 -2.38 -0.02 1.72 16 41 H 0.06 2.04 6.25 -2.39 -0.01 2.02 16 42 H 0.00 -0.13 7.34 -2.38 -0.02 -0.15 16 43 H 0.01 0.80 7.27 -2.39 -0.02 0.79 16 44 H 0.03 1.26 7.84 -2.39 -0.02 1.25 16 45 H 0.25 14.38 8.31 -92.71 -0.77 13.61 16 46 H 0.04 1.27 8.14 -2.39 -0.02 1.25 16 47 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 48 H 0.07 1.92 7.00 -2.39 -0.02 1.90 16 49 H 0.09 1.71 8.14 -2.38 -0.02 1.69 16 50 H 0.07 1.48 7.93 -2.39 -0.02 1.46 16 51 H 0.07 1.32 8.00 -2.39 -0.02 1.30 16 52 H 0.10 0.64 7.61 -2.39 -0.02 0.62 16 53 H 0.09 0.65 8.14 -2.38 -0.02 0.63 16 54 H 0.11 0.54 7.16 -2.38 -0.02 0.52 16 55 H 0.09 0.98 8.09 -2.39 -0.02 0.96 16 Total: -1.00 -76.15 414.71 4.05 -72.10 By element: Atomic # 1 Polarization: 11.23 SS G_CDS: 0.84 Total: 12.08 kcal Atomic # 6 Polarization: -0.82 SS G_CDS: 7.10 Total: 6.28 kcal Atomic # 7 Polarization: -101.39 SS G_CDS: -4.33 Total: -105.72 kcal Atomic # 8 Polarization: -30.65 SS G_CDS: -1.60 Total: -32.25 kcal Atomic # 14 Polarization: 45.48 SS G_CDS: 2.03 Total: 47.50 kcal Total: -76.15 4.05 -72.10 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001667417204.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.461 kcal (2) G-P(sol) polarization free energy of solvation -76.151 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.690 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.048 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.103 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.642 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds