Wall clock time and date at job start Tue Mar 31 2020 22:50:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42900 * 113.99849 * 2 1 4 4 C 1.52997 * 109.46804 * 180.02562 * 3 2 1 5 5 N 1.46494 * 109.47541 * 64.99958 * 4 3 2 6 6 C 1.36938 * 120.00024 * 270.00109 * 5 4 3 7 7 H 1.08003 * 120.00377 * 141.79914 * 6 5 4 8 8 C 1.38811 * 119.99867 * 321.79623 * 6 5 4 9 9 N 1.31621 * 120.00169 * 339.27963 * 8 6 5 10 10 Si 1.86801 * 120.00007 * 159.27615 * 8 6 5 11 11 H 1.48501 * 109.46983 * 0.02562 * 10 8 6 12 12 H 1.48505 * 109.47149 * 120.00285 * 10 8 6 13 13 H 1.48501 * 109.47199 * 240.00056 * 10 8 6 14 14 C 1.46509 * 120.00098 * 89.99602 * 5 4 3 15 15 C 1.53039 * 109.46116 * 244.77624 * 14 5 4 16 16 C 1.53191 * 109.31493 * 178.62921 * 15 14 5 17 17 N 1.46929 * 108.77360 * 54.63353 * 16 15 14 18 18 C 1.34770 * 120.62844 * 126.37075 * 17 16 15 19 19 O 1.21281 * 120.00050 * 359.97438 * 18 17 16 20 20 C 1.50699 * 120.00130 * 180.02562 * 18 17 16 21 21 C 1.53000 * 109.47579 * 179.97438 * 20 18 17 22 22 C 1.53003 * 109.47390 * 179.97438 * 21 20 18 23 23 C 1.53775 * 113.61285 * 184.99950 * 22 21 20 24 24 C 1.53781 * 87.17389 * 220.06296 * 23 22 21 25 25 C 1.53778 * 87.07904 * 25.39318 * 24 23 22 26 26 C 1.46922 * 118.74011 * 306.64934 * 17 16 15 27 27 C 1.52754 * 109.01215 * 53.30506 * 26 17 16 28 28 H 1.08998 * 109.47717 * 60.00011 * 1 2 3 29 29 H 1.09000 * 109.47214 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.47137 * 299.99869 * 1 2 3 31 31 H 1.08995 * 109.47333 * 60.00071 * 3 2 1 32 32 H 1.09003 * 109.46832 * 299.99969 * 3 2 1 33 33 H 1.09003 * 109.47268 * 304.99458 * 4 3 2 34 34 H 1.09007 * 109.46967 * 185.00119 * 4 3 2 35 35 H 0.96993 * 120.00069 * 180.02562 * 9 8 6 36 36 H 1.08992 * 109.45721 * 4.75342 * 14 5 4 37 37 H 1.08997 * 109.49646 * 58.67275 * 15 14 5 38 38 H 1.08999 * 109.52263 * 298.59839 * 15 14 5 39 39 H 1.08998 * 109.58376 * 294.85188 * 16 15 14 40 40 H 1.09000 * 109.70563 * 174.49369 * 16 15 14 41 41 H 1.09000 * 109.47225 * 60.00034 * 20 18 17 42 42 H 1.09001 * 109.47194 * 300.00302 * 20 18 17 43 43 H 1.09000 * 109.46752 * 59.99820 * 21 20 18 44 44 H 1.09001 * 109.47166 * 300.00395 * 21 20 18 45 45 H 1.08996 * 112.90533 * 316.25251 * 22 21 20 46 46 H 1.09004 * 113.61402 * 105.47198 * 23 22 21 47 47 H 1.08998 * 113.61993 * 334.65511 * 23 22 21 48 48 H 1.09003 * 113.61226 * 139.93942 * 24 23 22 49 49 H 1.08997 * 113.61609 * 270.84181 * 24 23 22 50 50 H 1.09004 * 113.61533 * 89.11453 * 25 24 23 51 51 H 1.08995 * 113.61380 * 219.93540 * 25 24 23 52 52 H 1.09002 * 109.59130 * 173.14526 * 26 17 16 53 53 H 1.09005 * 109.58374 * 293.56615 * 26 17 16 54 54 H 1.09001 * 109.57037 * 185.55488 * 27 26 17 55 55 H 1.09006 * 109.36196 * 65.50306 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1846 -0.0006 5 7 3.9757 0.5644 -1.2527 6 6 4.0967 -0.7970 -1.3368 7 1 3.8119 -1.3095 -2.2438 8 6 4.5856 -1.5184 -0.2563 9 7 5.3005 -0.9143 0.6691 10 14 4.2287 -3.3466 -0.1155 11 1 3.4109 -3.7821 -1.2760 12 1 5.5078 -4.1010 -0.1010 13 1 3.4843 -3.6102 1.1421 14 6 4.2863 1.4007 -2.4148 15 6 3.2910 1.1023 -3.5384 16 6 3.5977 2.0026 -4.7393 17 7 5.0061 1.8233 -5.1173 18 6 5.3421 1.5046 -6.3830 19 8 4.4782 1.3626 -7.2223 20 6 6.7911 1.3234 -6.7551 21 6 6.8960 0.9677 -8.2395 22 6 8.3672 0.7844 -8.6174 23 6 8.5919 0.5432 -10.1194 24 6 9.6550 -0.4924 -9.7164 25 6 8.8896 -0.6461 -8.3915 26 6 6.0408 1.9919 -4.0880 27 6 5.7072 1.0971 -2.8957 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 1.6886 1.8464 0.8899 32 1 1.6885 1.8463 -0.8900 33 1 3.8514 0.5682 0.8410 34 1 3.9785 2.1765 0.0889 35 1 5.6424 -1.4185 1.4238 36 1 4.2143 2.4517 -2.1355 37 1 2.2775 1.2963 -3.1876 38 1 3.3794 0.0572 -3.8353 39 1 3.4215 3.0439 -4.4696 40 1 2.9566 1.7286 -5.5772 41 1 7.2218 0.5196 -6.1580 42 1 7.3339 2.2491 -6.5637 43 1 6.4651 1.7712 -8.8369 44 1 6.3533 0.0419 -8.4304 45 1 9.0124 1.5562 -8.1977 46 1 9.0006 1.4069 -10.6439 47 1 7.7297 0.1095 -10.6258 48 1 9.6449 -1.3910 -10.3333 49 1 10.6529 -0.0703 -9.5978 50 1 8.1080 -1.4052 -8.4242 51 1 9.5386 -0.7440 -7.5213 52 1 7.0113 1.7085 -4.4955 53 1 6.0680 3.0324 -3.7642 54 1 6.4133 1.2875 -2.0875 55 1 5.7734 0.0520 -3.1985 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001670993843.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:50:13 Heat of formation + Delta-G solvation = -68.085416 kcal Electronic energy + Delta-G solvation = -30970.161546 eV Core-core repulsion = 27007.391455 eV Total energy + Delta-G solvation = -3962.770091 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.23228 -39.74120 -39.10595 -38.27129 -36.49924 -34.07799 -33.51984 -32.21976 -31.87847 -29.78002 -27.60504 -27.15535 -26.43326 -26.17241 -24.67353 -24.04524 -22.94327 -22.18471 -21.35501 -20.30284 -19.80975 -18.40973 -17.87553 -17.26079 -16.83007 -16.77193 -16.65728 -16.53138 -16.20519 -15.68817 -15.54533 -15.37827 -15.19603 -15.09408 -14.81153 -14.28085 -14.23242 -13.73294 -13.61347 -13.41680 -13.27287 -13.21468 -13.13819 -12.91050 -12.83010 -12.73950 -12.56370 -12.33624 -12.24703 -12.21802 -12.05558 -11.86098 -11.78218 -11.51437 -11.47394 -11.38366 -11.15167 -11.03673 -10.94499 -10.64138 -10.39233 -10.30116 -9.57651 -8.41009 -7.70154 -5.28459 1.42993 1.48426 1.55509 1.67632 2.11695 2.57989 3.22481 3.40170 3.54470 3.65416 3.71413 3.80303 3.94983 4.01325 4.03418 4.20233 4.25417 4.29648 4.35954 4.42194 4.42954 4.48426 4.53415 4.63157 4.65753 4.68365 4.71387 4.75391 4.82227 4.85951 4.86630 4.88897 4.92683 4.93131 4.94063 4.95363 5.03681 5.07135 5.12313 5.16839 5.20424 5.24674 5.33685 5.46584 5.51053 5.65664 5.70700 5.72317 5.77710 5.88549 6.50743 6.53313 6.70236 7.22719 7.31850 8.01134 8.50099 9.25575 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.013317 B = 0.002807 C = 0.002527 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2102.098512 B = 9971.694552 C =11079.065489 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.398 6.398 3 C 0.054 3.946 4 C 0.140 3.860 5 N -0.584 5.584 6 C -0.217 4.217 7 H 0.034 0.966 8 C -0.022 4.022 9 N -0.914 5.914 10 Si 0.934 3.066 11 H -0.282 1.282 12 H -0.294 1.294 13 H -0.296 1.296 14 C 0.173 3.827 15 C -0.125 4.125 16 C 0.120 3.880 17 N -0.608 5.608 18 C 0.506 3.494 19 O -0.594 6.594 20 C -0.131 4.131 21 C -0.087 4.087 22 C -0.106 4.106 23 C -0.139 4.139 24 C -0.140 4.140 25 C -0.145 4.145 26 C 0.116 3.884 27 C -0.124 4.124 28 H 0.041 0.959 29 H 0.079 0.921 30 H 0.047 0.953 31 H 0.045 0.955 32 H 0.039 0.961 33 H 0.065 0.935 34 H 0.057 0.943 35 H 0.246 0.754 36 H 0.068 0.932 37 H 0.061 0.939 38 H 0.030 0.970 39 H 0.085 0.915 40 H 0.070 0.930 41 H 0.101 0.899 42 H 0.121 0.879 43 H 0.060 0.940 44 H 0.046 0.954 45 H 0.106 0.894 46 H 0.074 0.926 47 H 0.072 0.928 48 H 0.065 0.935 49 H 0.090 0.910 50 H 0.068 0.932 51 H 0.071 0.929 52 H 0.105 0.895 53 H 0.091 0.909 54 H 0.062 0.938 55 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.866 9.622 -12.897 16.811 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.317 6.317 3 C -0.025 4.025 4 C 0.014 3.986 5 N -0.303 5.303 6 C -0.348 4.348 7 H 0.051 0.949 8 C -0.218 4.218 9 N -0.559 5.559 10 Si 0.765 3.235 11 H -0.207 1.207 12 H -0.221 1.221 13 H -0.223 1.223 14 C 0.067 3.933 15 C -0.165 4.165 16 C -0.003 4.003 17 N -0.340 5.340 18 C 0.296 3.704 19 O -0.475 6.475 20 C -0.171 4.171 21 C -0.125 4.125 22 C -0.124 4.124 23 C -0.177 4.177 24 C -0.177 4.177 25 C -0.183 4.183 26 C -0.007 4.007 27 C -0.163 4.163 28 H 0.060 0.940 29 H 0.097 0.903 30 H 0.065 0.935 31 H 0.063 0.937 32 H 0.057 0.943 33 H 0.083 0.917 34 H 0.075 0.925 35 H 0.055 0.945 36 H 0.086 0.914 37 H 0.079 0.921 38 H 0.049 0.951 39 H 0.103 0.897 40 H 0.088 0.912 41 H 0.119 0.881 42 H 0.139 0.861 43 H 0.078 0.922 44 H 0.065 0.935 45 H 0.124 0.876 46 H 0.093 0.907 47 H 0.090 0.910 48 H 0.084 0.916 49 H 0.108 0.892 50 H 0.087 0.913 51 H 0.090 0.910 52 H 0.123 0.877 53 H 0.109 0.891 54 H 0.081 0.919 55 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 4.608 9.324 -13.171 16.782 hybrid contribution -0.884 -1.373 0.624 1.748 sum 3.725 7.951 -12.547 15.314 Atomic orbital electron populations 1.22797 0.81807 1.02432 0.99983 1.88141 1.19388 1.28984 1.95168 1.23295 0.97080 0.83809 0.98267 1.20989 0.89421 0.96469 0.91719 1.43872 1.75692 1.02092 1.08637 1.18628 1.33545 0.83335 0.99295 0.94883 1.25390 0.97432 0.99466 0.99545 1.70041 1.36186 1.35916 1.13789 0.85748 0.76889 0.83890 0.77017 1.20679 1.22128 1.22269 1.20520 0.92093 0.93797 0.86927 1.22189 1.00067 0.98426 0.95846 1.21517 0.82171 0.99877 0.96729 1.48302 1.07975 1.68531 1.09226 1.21419 0.92817 0.74842 0.81277 1.90633 1.53214 1.53433 1.50233 1.21740 0.91175 1.05379 0.98767 1.21249 0.96210 1.01293 0.93780 1.22623 0.95078 0.97872 0.96858 1.22939 0.99110 0.99669 0.95940 1.22814 0.98441 0.99426 0.97028 1.23054 0.99900 0.96820 0.98504 1.21862 0.90957 1.00629 0.87231 1.22008 0.98390 0.99014 0.96934 0.94014 0.90272 0.93470 0.93673 0.94322 0.91665 0.92473 0.94489 0.91436 0.92082 0.95130 0.89651 0.91182 0.88062 0.86119 0.92162 0.93465 0.87580 0.90689 0.90950 0.91593 0.89166 0.91312 0.91046 0.87662 0.89119 0.91936 0.94407 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.84 11.01 113.37 1.25 2.08 16 2 O -0.40 -17.09 10.18 -148.98 -1.52 -18.60 16 3 C 0.05 2.06 6.28 71.98 0.45 2.51 16 4 C 0.14 6.16 5.70 86.38 0.49 6.65 16 5 N -0.58 -26.73 2.34 -677.88 -1.59 -28.32 16 6 C -0.22 -11.54 7.60 84.03 0.64 -10.91 16 7 H 0.03 1.89 7.09 -2.91 -0.02 1.87 16 8 C -0.02 -1.19 4.97 84.86 0.42 -0.77 16 9 N -0.91 -51.91 11.47 21.65 0.25 -51.66 16 10 Si 0.93 46.39 29.60 68.60 2.03 48.42 16 11 H -0.28 -13.95 7.11 99.48 0.71 -13.24 16 12 H -0.29 -14.41 7.11 99.48 0.71 -13.71 16 13 H -0.30 -14.86 7.11 99.48 0.71 -14.15 16 14 C 0.17 6.38 2.60 45.02 0.12 6.49 16 15 C -0.13 -4.44 5.38 30.67 0.16 -4.27 16 16 C 0.12 3.57 6.44 86.36 0.56 4.12 16 17 N -0.61 -17.03 2.98 -819.76 -2.44 -19.48 16 18 C 0.51 14.74 7.70 87.66 0.67 15.42 16 19 O -0.59 -21.92 15.39 -3.03 -0.05 -21.96 16 20 C -0.13 -2.67 4.04 29.85 0.12 -2.55 16 21 C -0.09 -1.81 4.34 30.60 0.13 -1.68 16 22 C -0.11 -1.67 3.66 -10.21 -0.04 -1.71 16 23 C -0.14 -2.08 7.64 31.12 0.24 -1.84 16 24 C -0.14 -1.96 8.08 31.12 0.25 -1.71 16 25 C -0.15 -2.39 7.64 31.18 0.24 -2.15 16 26 C 0.12 2.77 6.31 86.22 0.54 3.32 16 27 C -0.12 -4.24 5.21 30.53 0.16 -4.08 16 28 H 0.04 1.19 8.14 -2.39 -0.02 1.17 16 29 H 0.08 2.36 8.14 -2.39 -0.02 2.35 16 30 H 0.05 1.27 8.14 -2.38 -0.02 1.26 16 31 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 32 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 33 H 0.07 3.42 5.54 -2.39 -0.01 3.41 16 34 H 0.06 2.23 7.88 -2.38 -0.02 2.21 16 35 H 0.25 13.73 8.31 -92.71 -0.77 12.96 16 36 H 0.07 2.21 7.77 -2.39 -0.02 2.20 16 37 H 0.06 2.17 8.14 -2.39 -0.02 2.15 16 38 H 0.03 1.29 7.24 -2.39 -0.02 1.27 16 39 H 0.09 2.11 8.14 -2.39 -0.02 2.09 16 40 H 0.07 2.29 7.00 -2.39 -0.02 2.27 16 41 H 0.10 1.97 7.68 -2.39 -0.02 1.95 16 42 H 0.12 1.74 7.95 -2.39 -0.02 1.72 16 43 H 0.06 1.35 8.10 -2.39 -0.02 1.33 16 44 H 0.05 1.19 7.80 -2.39 -0.02 1.17 16 45 H 0.11 1.35 8.13 -2.39 -0.02 1.33 16 46 H 0.07 0.96 8.14 -2.38 -0.02 0.94 16 47 H 0.07 1.20 8.10 -2.39 -0.02 1.18 16 48 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 49 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 50 H 0.07 1.30 7.90 -2.39 -0.02 1.28 16 51 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 52 H 0.11 1.98 5.94 -2.39 -0.01 1.97 16 53 H 0.09 1.77 8.14 -2.38 -0.02 1.75 16 54 H 0.06 2.30 8.14 -2.39 -0.02 2.28 16 55 H 0.04 1.54 7.61 -2.38 -0.02 1.52 16 Total: -1.00 -68.25 423.77 3.93 -64.32 By element: Atomic # 1 Polarization: 17.53 SS G_CDS: 0.83 Total: 18.35 kcal Atomic # 6 Polarization: 2.52 SS G_CDS: 6.41 Total: 8.93 kcal Atomic # 7 Polarization: -95.68 SS G_CDS: -3.78 Total: -99.46 kcal Atomic # 8 Polarization: -39.01 SS G_CDS: -1.56 Total: -40.57 kcal Atomic # 14 Polarization: 46.39 SS G_CDS: 2.03 Total: 48.42 kcal Total: -68.25 3.93 -64.32 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001670993843.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.768 kcal (2) G-P(sol) polarization free energy of solvation -68.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.014 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.929 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.318 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.085 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds